Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

A

allCells - Variable in class org.neuroml1.model.network.InputSitePattern

AllCells() - Constructor for class org.neuroml1.model.network.InputSitePattern.AllCells

allToAll - Variable in class org.neuroml1.model.network.ConnectivityPattern

AllToAll() - Constructor for class org.neuroml1.model.network.ConnectivityPattern.AllToAll

alpha - Variable in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

alpha - Variable in class org.neuroml1.model.channel.DeprecatedVoltageGate

amplitude - Variable in class org.neuroml1.model.network.PulseInput

annotation - Variable in class org.neuroml1.model.channel.ChannelML

annotation - Variable in class org.neuroml1.model.channel.ChannelType

annotation - Variable in class org.neuroml1.model.channel.DeprecatedIon

annotation - Variable in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

annotation - Variable in class org.neuroml1.model.channel.DeprecatedParameter

annotation - Variable in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

annotation - Variable in class org.neuroml1.model.channel.DoubleExponentialSynapse

annotation - Variable in class org.neuroml1.model.channel.ElectricalSynapse

annotation - Variable in class org.neuroml1.model.channel.IonConcentration

annotation - Variable in class org.neuroml1.model.channel.SynapseType

annotation - Variable in class org.neuroml1.model.morph.Cable

annotation - Variable in class org.neuroml1.model.morph.Cell

annotation - Variable in class org.neuroml1.model.morph.Cell.Cables

annotation - Variable in class org.neuroml1.model.morph.Cell.CellBody

annotation - Variable in class org.neuroml1.model.morph.Cell.Segments

annotation - Variable in class org.neuroml1.model.morph.Cell.Spines

annotation - Variable in class org.neuroml1.model.morph.Feature

annotation - Variable in class org.neuroml1.model.morph.Morphology

annotation - Variable in class org.neuroml1.model.morph.Morphology.Features

annotation - Variable in class org.neuroml1.model.network.CellInstance

annotation - Variable in class org.neuroml1.model.network.Connections

annotation - Variable in class org.neuroml1.model.network.GridArrangement

annotation - Variable in class org.neuroml1.model.network.Input

annotation - Variable in class org.neuroml1.model.network.Inputs

annotation - Variable in class org.neuroml1.model.network.InputSites

annotation - Variable in class org.neuroml1.model.network.InputTarget

annotation - Variable in class org.neuroml1.model.network.Instances

annotation - Variable in class org.neuroml1.model.network.NetworkML

annotation - Variable in class org.neuroml1.model.network.Population

annotation - Variable in class org.neuroml1.model.network.PopulationLocation

annotation - Variable in class org.neuroml1.model.network.Populations

annotation - Variable in class org.neuroml1.model.network.Projection

annotation - Variable in class org.neuroml1.model.network.Projections

annotation - Variable in class org.neuroml1.model.network.RandomArrangement

annotation - Variable in class org.neuroml1.model.network.SynapseInternalProperties

annotation - Variable in class org.neuroml1.model.network.SynapseProperties

annotation - Variable in class org.neuroml1.model.NeuroMLLevel3

Annotation - Class in org.neuroml1.model.meta

Concise processing directives for downstream applications.

Annotation() - Constructor for class org.neuroml1.model.meta.Annotation

any - Variable in class org.neuroml1.model.meta.Annotation

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.Biophysics

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.InhomogeneousValue

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.InitialMembPotential

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.IonProperties

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.Mechanism

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.NamedParameter

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.SpecAxialResistance

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.SpecCapacitance

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.UnnamedParameter

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.VariableNamedParameter

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.VariableParameter

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Block

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.BlockingSynapse

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ChannelML

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ChannelType

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ClosedState

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ConcDependence

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ConcFactor

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DecayingPoolModel

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedHHGate

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedIon

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedKSGate

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedKSState

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedOhmic

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedParameter

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedTransition

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ElectricalSynapse

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.FacDep

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.FacDepSynapse

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.FixedPoolInfo

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Gate

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Gate.State

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.GatingComplex

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ImplementationPrefs

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Initialisation

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.IntegrateAndFire

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.IonConcentration

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.IonSpecies

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Offset

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.OpenState

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Parameter

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Parameters

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.PoolVolumeInfo

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Q10Settings

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.RateAdjustments

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.StdpDep

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.StdpSynapse

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.SteadyState

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.SynapseType

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.TimeCourse

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Transition

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.Level3Biophysics

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.Level3Cell

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.Level3Cells

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Annotation

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Authors

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.GroupDetail

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Manifold

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.ModelDBReference

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.NeuroMorphoRef

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.NeuronDBReference

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.NonSpatialGrid

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Person

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Point

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Point3D

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Points

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Polygon

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Polyhedron

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Properties

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Property

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.PropertyDetail

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Publication

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.RectangularBox

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.RectangularBox.Size

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Sphere

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Status

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cable

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.CableGroup

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.CableGroup.Cable

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cell

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cell.Cables

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cell.CellBody

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cell.Segments

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cell.Spines

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cells

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Feature

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.FreePoints

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Morphology

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Morphology.Features

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Path

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Segment

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Spine

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.CellInstance

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Connection

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Connections

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.GlobalSynapticProperties

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.GridArrangement

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.GridArrangement.Spacing

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Input

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Inputs

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputSite

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputSites

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputTarget

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Instances

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Level3Connectivity

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.LocalSynapticProperties

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.NetworkML

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.PerCellConnection

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Population

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.PopulationLocation

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Populations

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.PotentialSynapticLocation

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.PotentialSynLoc

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Projection

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Projections

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.PulseInput

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.RandomArrangement

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.RandomStim

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.RandomStimInstance

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.SynapseInternalProperties

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.SynapseProperties

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.SynapticLocation

append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.NeuroMLLevel3

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.Biophysics

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.InhomogeneousValue

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.InitialMembPotential

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.IonProperties

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.Mechanism

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.NamedParameter

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.SpecAxialResistance

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.SpecCapacitance

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.UnnamedParameter

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.VariableNamedParameter

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.bio.VariableParameter

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Block

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.BlockingSynapse

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ChannelML

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ChannelType

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ClosedState

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ConcDependence

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ConcFactor

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DecayingPoolModel

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedHHGate

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedIon

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedKSGate

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedKSState

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedOhmic

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedParameter

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedTransition

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ElectricalSynapse

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.FacDep

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.FacDepSynapse

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.FixedPoolInfo

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Gate

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Gate.State

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.GatingComplex

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ImplementationPrefs

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Initialisation

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.IntegrateAndFire

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.IonConcentration

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.IonSpecies

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Offset

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.OpenState

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Parameter

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Parameters

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.PoolVolumeInfo

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Q10Settings

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.RateAdjustments

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.StdpDep

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.StdpSynapse

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.SteadyState

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.SynapseType

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.TimeCourse

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.channel.Transition

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.Level3Biophysics

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.Level3Cell

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.Level3Cells

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Annotation

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Authors

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.GroupDetail

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Manifold

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.ModelDBReference

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.NeuroMorphoRef

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.NeuronDBReference

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.NonSpatialGrid

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Person

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Point

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Point3D

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Points

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Polygon

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Polyhedron

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Properties

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Property

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.PropertyDetail

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Publication

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.RectangularBox

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.RectangularBox.Size

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Sphere

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.meta.Status

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cable

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.CableGroup

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.CableGroup.Cable

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cell

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cell.Cables

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cell.CellBody

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cell.Segments

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cell.Spines

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Cells

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Feature

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.FreePoints

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Morphology

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Morphology.Features

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Path

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Segment

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.morph.Spine

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.CellInstance

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Connection

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Connections

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.GlobalSynapticProperties

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.GridArrangement

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.GridArrangement.Spacing

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Input

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Inputs

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputSite

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputSites

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.InputTarget

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Instances

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Level3Connectivity

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.LocalSynapticProperties

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.NetworkML

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.PerCellConnection

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Population

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.PopulationLocation

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Populations

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.PotentialSynapticLocation

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.PotentialSynLoc

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Projection

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.Projections

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.PulseInput

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.RandomArrangement

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.RandomStim

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.RandomStimInstance

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.SynapseInternalProperties

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.SynapseProperties

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.network.SynapticLocation

appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml1.model.NeuroMLLevel3

authorList - Variable in class org.neuroml1.model.channel.ChannelType

authorList - Variable in class org.neuroml1.model.channel.IonConcentration

authorList - Variable in class org.neuroml1.model.channel.SynapseType

authorList - Variable in class org.neuroml1.model.morph.Cell

authorList - Variable in class org.neuroml1.model.NeuroMLLevel3

Authors - Class in org.neuroml1.model.meta

A reference to an author Note: This element will possibly change when a new set of schema files is adopted for adding references, authors, citations, etc.

Authors() - Constructor for class org.neuroml1.model.meta.Authors

B

beta - Variable in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

beta - Variable in class org.neuroml1.model.channel.DeprecatedVoltageGate

biophysics - Variable in class org.neuroml1.model.Level3Cell

Biophysics - Class in org.neuroml1.model.bio

Description of biophysical properties of a cell.

Biophysics() - Constructor for class org.neuroml1.model.bio.Biophysics

block - Variable in class org.neuroml1.model.channel.BlockingSynapse

Block - Class in org.neuroml1.model.channel

Specification for the influence of a blocking species on the conductance of a BlockingSynapse.

Block() - Constructor for class org.neuroml1.model.channel.Block

blockingSyn - Variable in class org.neuroml1.model.channel.SynapseType

BlockingSynapse - Class in org.neuroml1.model.channel

A synaptic mechanism whose conductance can be blocked by the presence of a specific species (ion/molecule).

BlockingSynapse() - Constructor for class org.neuroml1.model.channel.BlockingSynapse

C

cable - Variable in class org.neuroml1.model.morph.CableGroup

cable - Variable in class org.neuroml1.model.morph.Cell.Cables

cable - Variable in class org.neuroml1.model.morph.Segment

Cable - Class in org.neuroml1.model.morph

Definition of a cable.

Cable() - Constructor for class org.neuroml1.model.morph.Cable

Cable() - Constructor for class org.neuroml1.model.morph.CableGroup.Cable

cablegroup - Variable in class org.neuroml1.model.morph.Cell.Cables

CableGroup - Class in org.neuroml1.model.morph

Definition of a cable group.

CableGroup() - Constructor for class org.neuroml1.model.morph.CableGroup

CableGroup.Cable - Class in org.neuroml1.model.morph

Java class for anonymous complex type.

cables - Variable in class org.neuroml1.model.morph.Cell

Cables() - Constructor for class org.neuroml1.model.morph.Cell.Cables

ceiling - Variable in class org.neuroml1.model.channel.DecayingPoolModel

ceilingAttribute - Variable in class org.neuroml1.model.channel.DecayingPoolModel

cell - Variable in class org.neuroml1.model.Level3Cells

cell - Variable in class org.neuroml1.model.morph.Cells

Cell - Class in org.neuroml1.model.morph

Definition of a cell.

Cell() - Constructor for class org.neuroml1.model.morph.Cell

Cell.Cables - Class in org.neuroml1.model.morph

Java class for anonymous complex type.

Cell.CellBody - Class in org.neuroml1.model.morph

Java class for anonymous complex type.

Cell.Segments - Class in org.neuroml1.model.morph

Java class for anonymous complex type.

Cell.Spines - Class in org.neuroml1.model.morph

Java class for anonymous complex type.

cellBody - Variable in class org.neuroml1.model.morph.Cell

CellBody() - Constructor for class org.neuroml1.model.morph.Cell.CellBody

cellGroup - Variable in class org.neuroml1.model.network.InputTarget

cellId - Variable in class org.neuroml1.model.network.InputSite

cellId - Variable in class org.neuroml1.model.network.SynapticLocation

CellInstance - Class in org.neuroml1.model.network

An instance of a cell at a the specified location

CellInstance() - Constructor for class org.neuroml1.model.network.CellInstance

cells - Variable in class org.neuroml1.model.morph.Morphology

cells - Variable in class org.neuroml1.model.NeuroMLLevel3

Cells - Class in org.neuroml1.model.morph

Collection of all cells.

Cells() - Constructor for class org.neuroml1.model.morph.Cells

cellType - Variable in class org.neuroml1.model.network.Population

cellTypeAttribute - Variable in class org.neuroml1.model.network.Population

CellTypeElement() - Constructor for class org.neuroml1.model.network.Population.CellTypeElement

CellTypeElement(String) - Constructor for class org.neuroml1.model.network.Population.CellTypeElement

center - Variable in class org.neuroml1.model.meta.Sphere

CHANNEL_MECHANISM - Enum constant in enum org.neuroml1.model.bio.MechanismType

Voltage and/or conductance dependent membrane conductance

ChannelML - Class in org.neuroml1.model.channel

Root element containing the ions used in the mechanism, the unit system of the file (as attribute), and information on channels and/or ion concentration dynamics.

ChannelML() - Constructor for class org.neuroml1.model.channel.ChannelML

CHANNELML_NAMESPACE_URI - Static variable in class org.neuroml1.model.util.NeuroMLConverter

CHANNELML_SCHEMA_LOCATION - Static variable in class org.neuroml1.model.util.NeuroMLConverter

channels - Variable in class org.neuroml1.model.NeuroMLLevel3

channelToXml(ChannelML, String) - Method in class org.neuroml1.model.util.NeuroMLConverter

channelType - Variable in class org.neuroml1.model.channel.ChannelML

ChannelType - Class in org.neuroml1.model.channel

Definition of a voltage/concentration dependent cell membrane conductance

ChannelType() - Constructor for class org.neuroml1.model.channel.ChannelType

charge - Variable in class org.neuroml1.model.channel.ConcDependence

charge - Variable in class org.neuroml1.model.channel.ConcFactor

charge - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

charge - Variable in class org.neuroml1.model.channel.DeprecatedIon

clone() - Method in class org.neuroml1.model.bio.Biophysics

clone() - Method in class org.neuroml1.model.bio.InhomogeneousValue

clone() - Method in class org.neuroml1.model.bio.InitialMembPotential

clone() - Method in class org.neuroml1.model.bio.IonProperties

clone() - Method in class org.neuroml1.model.bio.Mechanism

clone() - Method in class org.neuroml1.model.bio.NamedParameter

clone() - Method in class org.neuroml1.model.bio.SpecAxialResistance

clone() - Method in class org.neuroml1.model.bio.SpecCapacitance

clone() - Method in class org.neuroml1.model.bio.UnnamedParameter

clone() - Method in class org.neuroml1.model.bio.VariableNamedParameter

clone() - Method in class org.neuroml1.model.bio.VariableParameter

clone() - Method in class org.neuroml1.model.channel.Block

clone() - Method in class org.neuroml1.model.channel.BlockingSynapse

clone() - Method in class org.neuroml1.model.channel.ChannelML

clone() - Method in class org.neuroml1.model.channel.ChannelType

clone() - Method in class org.neuroml1.model.channel.ClosedState

clone() - Method in class org.neuroml1.model.channel.ConcDependence

clone() - Method in class org.neuroml1.model.channel.ConcFactor

clone() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

clone() - Method in class org.neuroml1.model.channel.DecayingPoolModel

clone() - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

clone() - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

clone() - Method in class org.neuroml1.model.channel.DeprecatedHHGate

clone() - Method in class org.neuroml1.model.channel.DeprecatedIon

clone() - Method in class org.neuroml1.model.channel.DeprecatedKSGate

clone() - Method in class org.neuroml1.model.channel.DeprecatedKSState

clone() - Method in class org.neuroml1.model.channel.DeprecatedOhmic

clone() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

clone() - Method in class org.neuroml1.model.channel.DeprecatedParameter

clone() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

clone() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

clone() - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

clone() - Method in class org.neuroml1.model.channel.DeprecatedTransition

clone() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

clone() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

clone() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

clone() - Method in class org.neuroml1.model.channel.ElectricalSynapse

clone() - Method in class org.neuroml1.model.channel.FacDep

clone() - Method in class org.neuroml1.model.channel.FacDepSynapse

clone() - Method in class org.neuroml1.model.channel.FixedPoolInfo

clone() - Method in class org.neuroml1.model.channel.Gate

clone() - Method in class org.neuroml1.model.channel.Gate.State

clone() - Method in class org.neuroml1.model.channel.GatingComplex

clone() - Method in class org.neuroml1.model.channel.ImplementationPrefs

clone() - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

clone() - Method in class org.neuroml1.model.channel.Initialisation

clone() - Method in class org.neuroml1.model.channel.IntegrateAndFire

clone() - Method in class org.neuroml1.model.channel.IonConcentration

clone() - Method in class org.neuroml1.model.channel.IonSpecies

clone() - Method in class org.neuroml1.model.channel.MultiDecaySynapse

clone() - Method in class org.neuroml1.model.channel.Offset

clone() - Method in class org.neuroml1.model.channel.OpenState

clone() - Method in class org.neuroml1.model.channel.Parameter

clone() - Method in class org.neuroml1.model.channel.Parameters

clone() - Method in class org.neuroml1.model.channel.PoolVolumeInfo

clone() - Method in class org.neuroml1.model.channel.Q10Settings

clone() - Method in class org.neuroml1.model.channel.RateAdjustments

clone() - Method in class org.neuroml1.model.channel.StdpDep

clone() - Method in class org.neuroml1.model.channel.StdpSynapse

clone() - Method in class org.neuroml1.model.channel.SteadyState

clone() - Method in class org.neuroml1.model.channel.SynapseType

clone() - Method in class org.neuroml1.model.channel.TimeCourse

clone() - Method in class org.neuroml1.model.channel.Transition

clone() - Method in class org.neuroml1.model.Level3Biophysics

clone() - Method in class org.neuroml1.model.Level3Cell

clone() - Method in class org.neuroml1.model.Level3Cells

clone() - Method in class org.neuroml1.model.meta.Annotation

clone() - Method in class org.neuroml1.model.meta.Authors

clone() - Method in class org.neuroml1.model.meta.GroupDetail

clone() - Method in class org.neuroml1.model.meta.Manifold

clone() - Method in class org.neuroml1.model.meta.ModelDBReference

clone() - Method in class org.neuroml1.model.meta.NeuroMorphoRef

clone() - Method in class org.neuroml1.model.meta.NeuronDBReference

clone() - Method in class org.neuroml1.model.meta.NonSpatialGrid

clone() - Method in class org.neuroml1.model.meta.Person

clone() - Method in class org.neuroml1.model.meta.Point

clone() - Method in class org.neuroml1.model.meta.Point3D

clone() - Method in class org.neuroml1.model.meta.Points

clone() - Method in class org.neuroml1.model.meta.Polygon

clone() - Method in class org.neuroml1.model.meta.Polyhedron

clone() - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

clone() - Method in class org.neuroml1.model.meta.Properties

clone() - Method in class org.neuroml1.model.meta.Property

clone() - Method in class org.neuroml1.model.meta.PropertyDetail

clone() - Method in class org.neuroml1.model.meta.Publication

clone() - Method in class org.neuroml1.model.meta.RectangularBox

clone() - Method in class org.neuroml1.model.meta.RectangularBox.Size

clone() - Method in class org.neuroml1.model.meta.Sphere

clone() - Method in class org.neuroml1.model.meta.Status

clone() - Method in class org.neuroml1.model.morph.Cable

clone() - Method in class org.neuroml1.model.morph.CableGroup.Cable

clone() - Method in class org.neuroml1.model.morph.CableGroup

clone() - Method in class org.neuroml1.model.morph.Cell.Cables

clone() - Method in class org.neuroml1.model.morph.Cell.CellBody

clone() - Method in class org.neuroml1.model.morph.Cell

clone() - Method in class org.neuroml1.model.morph.Cell.Segments

clone() - Method in class org.neuroml1.model.morph.Cell.Spines

clone() - Method in class org.neuroml1.model.morph.Cells

clone() - Method in class org.neuroml1.model.morph.Feature

clone() - Method in class org.neuroml1.model.morph.FreePoints

clone() - Method in class org.neuroml1.model.morph.InhomogeneousParam

clone() - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

clone() - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

clone() - Method in class org.neuroml1.model.morph.Morphology

clone() - Method in class org.neuroml1.model.morph.Morphology.Features

clone() - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

clone() - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

clone() - Method in class org.neuroml1.model.morph.Path

clone() - Method in class org.neuroml1.model.morph.Segment

clone() - Method in class org.neuroml1.model.morph.Spine

clone() - Method in class org.neuroml1.model.network.CellInstance

clone() - Method in class org.neuroml1.model.network.Connection

clone() - Method in class org.neuroml1.model.network.Connections

clone() - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

clone() - Method in class org.neuroml1.model.network.ConnectivityPattern

clone() - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

clone() - Method in class org.neuroml1.model.network.GlobalSynapticProperties

clone() - Method in class org.neuroml1.model.network.GridArrangement

clone() - Method in class org.neuroml1.model.network.GridArrangement.Spacing

clone() - Method in class org.neuroml1.model.network.Input

clone() - Method in class org.neuroml1.model.network.Inputs

clone() - Method in class org.neuroml1.model.network.InputSite

clone() - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

clone() - Method in class org.neuroml1.model.network.InputSitePattern

clone() - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

clone() - Method in class org.neuroml1.model.network.InputSites

clone() - Method in class org.neuroml1.model.network.InputTarget

clone() - Method in class org.neuroml1.model.network.Instances

clone() - Method in class org.neuroml1.model.network.Level3Connectivity

clone() - Method in class org.neuroml1.model.network.LocalSynapticProperties

clone() - Method in class org.neuroml1.model.network.NetworkML

clone() - Method in class org.neuroml1.model.network.PerCellConnection

clone() - Method in class org.neuroml1.model.network.Population

clone() - Method in class org.neuroml1.model.network.PopulationLocation

clone() - Method in class org.neuroml1.model.network.Populations

clone() - Method in class org.neuroml1.model.network.PotentialSynapticLocation

clone() - Method in class org.neuroml1.model.network.PotentialSynLoc

clone() - Method in class org.neuroml1.model.network.Projection

clone() - Method in class org.neuroml1.model.network.Projections

clone() - Method in class org.neuroml1.model.network.PulseInput

clone() - Method in class org.neuroml1.model.network.RandomArrangement

clone() - Method in class org.neuroml1.model.network.RandomStim

clone() - Method in class org.neuroml1.model.network.RandomStimInstance

clone() - Method in class org.neuroml1.model.network.SynapseInternalProperties

clone() - Method in class org.neuroml1.model.network.SynapseProperties

clone() - Method in class org.neuroml1.model.network.SynapticLocation

clone() - Method in class org.neuroml1.model.NeuroMLLevel3

closedState - Variable in class org.neuroml1.model.channel.GatingComplex

ClosedState - Class in org.neuroml1.model.channel

Closed state of a gating complex

ClosedState() - Constructor for class org.neuroml1.model.channel.ClosedState

comment - Variable in class org.neuroml1.model.channel.ImplementationPrefs

comment - Variable in class org.neuroml1.model.meta.ModelDBReference

comment - Variable in class org.neuroml1.model.meta.NeuroMorphoRef

comment - Variable in class org.neuroml1.model.meta.NeuronDBReference

comment - Variable in class org.neuroml1.model.meta.Person

comment - Variable in class org.neuroml1.model.meta.Publication

comment - Variable in class org.neuroml1.model.meta.Status

conc - Variable in class org.neuroml1.model.channel.Block

concDependence - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

concDependence - Variable in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

ConcDependence - Class in org.neuroml1.model.channel

Specification of the factor to use in the concentration dependence of the rate expressions of a gate

ConcDependence() - Constructor for class org.neuroml1.model.channel.ConcDependence

concFactor - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

concFactor - Variable in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

ConcFactor - Class in org.neuroml1.model.channel

Specification of the time independent scaling factor for a concentration dependent conductance.

ConcFactor() - Constructor for class org.neuroml1.model.channel.ConcFactor

condLaw - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

conductance - Variable in class org.neuroml1.model.channel.DeprecatedOhmic

conductance - Variable in class org.neuroml1.model.channel.ElectricalSynapse

Conductance() - Constructor for class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

ConductanceLaw - Enum in org.neuroml1.model.channel

Java class for ConductanceLaw.

connection - Variable in class org.neuroml1.model.network.Connections

Connection - Class in org.neuroml1.model.network

A single synaptic connection

Connection() - Constructor for class org.neuroml1.model.network.Connection

Connection.InternalProperties - Class in org.neuroml1.model.network

connections - Variable in class org.neuroml1.model.network.Projection

Connections - Class in org.neuroml1.model.network

The list of cell connections

Connections() - Constructor for class org.neuroml1.model.network.Connections

connectivity - Variable in class org.neuroml1.model.Level3Cell

connectivityPattern - Variable in class org.neuroml1.model.network.Projection

ConnectivityPattern - Class in org.neuroml1.model.network

Information on the number of target cells connected to source cells, etc.

ConnectivityPattern() - Constructor for class org.neuroml1.model.network.ConnectivityPattern

ConnectivityPattern.AllToAll - Class in org.neuroml1.model.network

Java class for anonymous complex type.

ConnectivityPattern.FixedProbability - Class in org.neuroml1.model.network

Java class for anonymous complex type.

content - Variable in class org.neuroml1.model.network.Connection

content - Variable in class org.neuroml1.model.network.PotentialSynapticLocation

content - Variable in class org.neuroml1.model.network.PotentialSynLoc

contributor - Variable in class org.neuroml1.model.meta.Status

copyTo(Object) - Method in class org.neuroml1.model.bio.Biophysics

copyTo(Object) - Method in class org.neuroml1.model.bio.InhomogeneousValue

copyTo(Object) - Method in class org.neuroml1.model.bio.InitialMembPotential

copyTo(Object) - Method in class org.neuroml1.model.bio.IonProperties

copyTo(Object) - Method in class org.neuroml1.model.bio.Mechanism

copyTo(Object) - Method in class org.neuroml1.model.bio.NamedParameter

copyTo(Object) - Method in class org.neuroml1.model.bio.SpecAxialResistance

copyTo(Object) - Method in class org.neuroml1.model.bio.SpecCapacitance

copyTo(Object) - Method in class org.neuroml1.model.bio.UnnamedParameter

copyTo(Object) - Method in class org.neuroml1.model.bio.VariableNamedParameter

copyTo(Object) - Method in class org.neuroml1.model.bio.VariableParameter

copyTo(Object) - Method in class org.neuroml1.model.channel.Block

copyTo(Object) - Method in class org.neuroml1.model.channel.BlockingSynapse

copyTo(Object) - Method in class org.neuroml1.model.channel.ChannelML

copyTo(Object) - Method in class org.neuroml1.model.channel.ChannelType

copyTo(Object) - Method in class org.neuroml1.model.channel.ClosedState

copyTo(Object) - Method in class org.neuroml1.model.channel.ConcDependence

copyTo(Object) - Method in class org.neuroml1.model.channel.ConcFactor

copyTo(Object) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

copyTo(Object) - Method in class org.neuroml1.model.channel.DecayingPoolModel

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedHHGate

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedIon

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedKSGate

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedKSState

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedOhmic

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedParameter

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedTransition

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

copyTo(Object) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

copyTo(Object) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

copyTo(Object) - Method in class org.neuroml1.model.channel.ElectricalSynapse

copyTo(Object) - Method in class org.neuroml1.model.channel.FacDep

copyTo(Object) - Method in class org.neuroml1.model.channel.FacDepSynapse

copyTo(Object) - Method in class org.neuroml1.model.channel.FixedPoolInfo

copyTo(Object) - Method in class org.neuroml1.model.channel.Gate

copyTo(Object) - Method in class org.neuroml1.model.channel.Gate.State

copyTo(Object) - Method in class org.neuroml1.model.channel.GatingComplex

copyTo(Object) - Method in class org.neuroml1.model.channel.ImplementationPrefs

copyTo(Object) - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

copyTo(Object) - Method in class org.neuroml1.model.channel.Initialisation

copyTo(Object) - Method in class org.neuroml1.model.channel.IntegrateAndFire

copyTo(Object) - Method in class org.neuroml1.model.channel.IonConcentration

copyTo(Object) - Method in class org.neuroml1.model.channel.IonSpecies

copyTo(Object) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

copyTo(Object) - Method in class org.neuroml1.model.channel.Offset

copyTo(Object) - Method in class org.neuroml1.model.channel.OpenState

copyTo(Object) - Method in class org.neuroml1.model.channel.Parameter

copyTo(Object) - Method in class org.neuroml1.model.channel.Parameters

copyTo(Object) - Method in class org.neuroml1.model.channel.PoolVolumeInfo

copyTo(Object) - Method in class org.neuroml1.model.channel.Q10Settings

copyTo(Object) - Method in class org.neuroml1.model.channel.RateAdjustments

copyTo(Object) - Method in class org.neuroml1.model.channel.StdpDep

copyTo(Object) - Method in class org.neuroml1.model.channel.StdpSynapse

copyTo(Object) - Method in class org.neuroml1.model.channel.SteadyState

copyTo(Object) - Method in class org.neuroml1.model.channel.SynapseType

copyTo(Object) - Method in class org.neuroml1.model.channel.TimeCourse

copyTo(Object) - Method in class org.neuroml1.model.channel.Transition

copyTo(Object) - Method in class org.neuroml1.model.Level3Biophysics

copyTo(Object) - Method in class org.neuroml1.model.Level3Cell

copyTo(Object) - Method in class org.neuroml1.model.Level3Cells

copyTo(Object) - Method in class org.neuroml1.model.meta.Annotation

copyTo(Object) - Method in class org.neuroml1.model.meta.Authors

copyTo(Object) - Method in class org.neuroml1.model.meta.GroupDetail

copyTo(Object) - Method in class org.neuroml1.model.meta.Manifold

copyTo(Object) - Method in class org.neuroml1.model.meta.ModelDBReference

copyTo(Object) - Method in class org.neuroml1.model.meta.NeuroMorphoRef

copyTo(Object) - Method in class org.neuroml1.model.meta.NeuronDBReference

copyTo(Object) - Method in class org.neuroml1.model.meta.NonSpatialGrid

copyTo(Object) - Method in class org.neuroml1.model.meta.Person

copyTo(Object) - Method in class org.neuroml1.model.meta.Point

copyTo(Object) - Method in class org.neuroml1.model.meta.Point3D

copyTo(Object) - Method in class org.neuroml1.model.meta.Points

copyTo(Object) - Method in class org.neuroml1.model.meta.Polygon

copyTo(Object) - Method in class org.neuroml1.model.meta.Polyhedron

copyTo(Object) - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

copyTo(Object) - Method in class org.neuroml1.model.meta.Properties

copyTo(Object) - Method in class org.neuroml1.model.meta.Property

copyTo(Object) - Method in class org.neuroml1.model.meta.PropertyDetail

copyTo(Object) - Method in class org.neuroml1.model.meta.Publication

copyTo(Object) - Method in class org.neuroml1.model.meta.RectangularBox

copyTo(Object) - Method in class org.neuroml1.model.meta.RectangularBox.Size

copyTo(Object) - Method in class org.neuroml1.model.meta.Sphere

copyTo(Object) - Method in class org.neuroml1.model.meta.Status

copyTo(Object) - Method in class org.neuroml1.model.morph.Cable

copyTo(Object) - Method in class org.neuroml1.model.morph.CableGroup.Cable

copyTo(Object) - Method in class org.neuroml1.model.morph.CableGroup

copyTo(Object) - Method in class org.neuroml1.model.morph.Cell.Cables

copyTo(Object) - Method in class org.neuroml1.model.morph.Cell.CellBody

copyTo(Object) - Method in class org.neuroml1.model.morph.Cell

copyTo(Object) - Method in class org.neuroml1.model.morph.Cell.Segments

copyTo(Object) - Method in class org.neuroml1.model.morph.Cell.Spines

copyTo(Object) - Method in class org.neuroml1.model.morph.Cells

copyTo(Object) - Method in class org.neuroml1.model.morph.Feature

copyTo(Object) - Method in class org.neuroml1.model.morph.FreePoints

copyTo(Object) - Method in class org.neuroml1.model.morph.InhomogeneousParam

copyTo(Object) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

copyTo(Object) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

copyTo(Object) - Method in class org.neuroml1.model.morph.Morphology

copyTo(Object) - Method in class org.neuroml1.model.morph.Morphology.Features

copyTo(Object) - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

copyTo(Object) - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

copyTo(Object) - Method in class org.neuroml1.model.morph.Path

copyTo(Object) - Method in class org.neuroml1.model.morph.Segment

copyTo(Object) - Method in class org.neuroml1.model.morph.Spine

copyTo(Object) - Method in class org.neuroml1.model.network.CellInstance

copyTo(Object) - Method in class org.neuroml1.model.network.Connection

copyTo(Object) - Method in class org.neuroml1.model.network.Connections

copyTo(Object) - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

copyTo(Object) - Method in class org.neuroml1.model.network.ConnectivityPattern

copyTo(Object) - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

copyTo(Object) - Method in class org.neuroml1.model.network.GlobalSynapticProperties

copyTo(Object) - Method in class org.neuroml1.model.network.GridArrangement

copyTo(Object) - Method in class org.neuroml1.model.network.GridArrangement.Spacing

copyTo(Object) - Method in class org.neuroml1.model.network.Input

copyTo(Object) - Method in class org.neuroml1.model.network.Inputs

copyTo(Object) - Method in class org.neuroml1.model.network.InputSite

copyTo(Object) - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

copyTo(Object) - Method in class org.neuroml1.model.network.InputSitePattern

copyTo(Object) - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

copyTo(Object) - Method in class org.neuroml1.model.network.InputSites

copyTo(Object) - Method in class org.neuroml1.model.network.InputTarget

copyTo(Object) - Method in class org.neuroml1.model.network.Instances

copyTo(Object) - Method in class org.neuroml1.model.network.Level3Connectivity

copyTo(Object) - Method in class org.neuroml1.model.network.LocalSynapticProperties

copyTo(Object) - Method in class org.neuroml1.model.network.NetworkML

copyTo(Object) - Method in class org.neuroml1.model.network.PerCellConnection

copyTo(Object) - Method in class org.neuroml1.model.network.Population

copyTo(Object) - Method in class org.neuroml1.model.network.PopulationLocation

copyTo(Object) - Method in class org.neuroml1.model.network.Populations

copyTo(Object) - Method in class org.neuroml1.model.network.PotentialSynapticLocation

copyTo(Object) - Method in class org.neuroml1.model.network.PotentialSynLoc

copyTo(Object) - Method in class org.neuroml1.model.network.Projection

copyTo(Object) - Method in class org.neuroml1.model.network.Projections

copyTo(Object) - Method in class org.neuroml1.model.network.PulseInput

copyTo(Object) - Method in class org.neuroml1.model.network.RandomArrangement

copyTo(Object) - Method in class org.neuroml1.model.network.RandomStim

copyTo(Object) - Method in class org.neuroml1.model.network.RandomStimInstance

copyTo(Object) - Method in class org.neuroml1.model.network.SynapseInternalProperties

copyTo(Object) - Method in class org.neuroml1.model.network.SynapseProperties

copyTo(Object) - Method in class org.neuroml1.model.network.SynapticLocation

copyTo(Object) - Method in class org.neuroml1.model.NeuroMLLevel3

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.Biophysics

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.InhomogeneousValue

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.InitialMembPotential

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.IonProperties

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.Mechanism

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.NamedParameter

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.SpecAxialResistance

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.SpecCapacitance

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.UnnamedParameter

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.VariableNamedParameter

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.bio.VariableParameter

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.Block

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.BlockingSynapse

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.ChannelML

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.ChannelType

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.ClosedState

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.ConcDependence

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.ConcFactor

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DecayingPoolModel

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedHHGate

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedIon

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedKSGate

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedKSState

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedOhmic

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedParameter

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedTransition

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.ElectricalSynapse

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.FacDep

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.FacDepSynapse

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.FixedPoolInfo

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.Gate

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.Gate.State

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.GatingComplex

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.ImplementationPrefs

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.Initialisation

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.IntegrateAndFire

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.IonConcentration

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.IonSpecies

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.Offset

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.OpenState

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.Parameter

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.Parameters

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.PoolVolumeInfo

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.Q10Settings

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.RateAdjustments

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.StdpDep

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.StdpSynapse

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.SteadyState

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.SynapseType

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.TimeCourse

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.channel.Transition

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.Level3Biophysics

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.Level3Cell

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.Level3Cells

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Annotation

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Authors

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.GroupDetail

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Manifold

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.ModelDBReference

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.NeuroMorphoRef

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.NeuronDBReference

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.NonSpatialGrid

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Person

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Point

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Point3D

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Points

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Polygon

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Polyhedron

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Properties

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Property

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.PropertyDetail

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Publication

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.RectangularBox

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.RectangularBox.Size

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Sphere

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.meta.Status

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Cable

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.CableGroup.Cable

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.CableGroup

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Cell.Cables

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Cell.CellBody

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Cell

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Cell.Segments

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Cell.Spines

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Cells

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Feature

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.FreePoints

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Morphology

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Morphology.Features

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Path

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Segment

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.morph.Spine

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.CellInstance

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.Connection

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.Connections

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.GlobalSynapticProperties

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.GridArrangement

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.GridArrangement.Spacing

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.Input

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.Inputs

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.InputSite

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.InputSites

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.InputTarget

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.Instances

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.Level3Connectivity

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.LocalSynapticProperties

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.NetworkML

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.PerCellConnection

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.Population

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.PopulationLocation

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.Populations

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.PotentialSynapticLocation

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.PotentialSynLoc

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.Projection

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.Projections

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.PulseInput

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.RandomArrangement

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.RandomStim

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.RandomStimInstance

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.SynapseInternalProperties

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.SynapseProperties

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.network.SynapticLocation

copyTo(ObjectLocator, Object, CopyStrategy2) - Method in class org.neuroml1.model.NeuroMLLevel3

CoreEquationType - Enum in org.neuroml1.model.channel

Java class for CoreEquationType.

corner - Variable in class org.neuroml1.model.meta.RectangularBox

createAnnotation() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Annotation

createAuthors() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Authors

createBiophysics() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of Biophysics

createBiophysics(Biophysics) - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of JAXBElement<Biophysics>

createBlock() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of Block

createBlockingSynapse() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of BlockingSynapse

createCable() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Cable

createCableGroup() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of CableGroup

createCableGroupCable() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of CableGroup.Cable

createCell() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Cell

createCellCables() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Cell.Cables

createCellCellBody() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Cell.CellBody

createCellInstance() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of CellInstance

createCells() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Cells

createCellSegments() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Cell.Segments

createCellSpines() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Cell.Spines

createChannelml(ChannelML) - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of JAXBElement<ChannelML>

createChannelML() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of ChannelML

createChannelType() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of ChannelType

createClosedState() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of ClosedState

createConcDependence() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of ConcDependence

createConcFactor() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of ConcFactor

createConnection() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Connection

createConnectionAnnotation(Annotation) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<Annotation>

createConnectionGroup(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<String>

createConnectionInternalProperties(LocalSynapticProperties) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Connection.InternalProperties

createConnectionNotes(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<String>

createConnectionPost(SynapticLocation) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<SynapticLocation>

createConnectionPre(SynapticLocation) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<SynapticLocation>

createConnectionProperties(Properties) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<Properties>

createConnections() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Connections

createConnectivityPattern() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of ConnectivityPattern

createConnectivityPatternAllToAll() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of ConnectivityPattern.AllToAll

createConnectivityPatternFixedProbability() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of ConnectivityPattern.FixedProbability

createCurrentVoltageRelation() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of CurrentVoltageRelation

createDecayingPoolModel() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DecayingPoolModel

createDeprecatedAkdEquation() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedAkdEquation

createDeprecatedGenericEquation() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedGenericEquation

createDeprecatedHHGate() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedHHGate

createDeprecatedIon() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedIon

createDeprecatedKSGate() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedKSGate

createDeprecatedKSState() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedKSState

createDeprecatedOhmic() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedOhmic

createDeprecatedOhmicConductance() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedOhmic.Conductance

createDeprecatedParameter() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedParameter

createDeprecatedRateConstantEqn() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedRateConstantEqn

createDeprecatedRateConstantEqnChoice() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedRateConstantEqnChoice

createDeprecatedRateConstVoltConcDep() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedRateConstVoltConcDep

createDeprecatedTransition() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedTransition

createDeprecatedVoltageConcGate() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedVoltageConcGate

createDeprecatedVoltageGate() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DeprecatedVoltageGate

createDoubleExponentialSynapse() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of DoubleExponentialSynapse

createElectricalSynapse() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of ElectricalSynapse

createFacDep() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of FacDep

createFacDepSynapse() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of FacDepSynapse

createFeature() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Feature

createFixedPoolInfo() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of FixedPoolInfo

createFreePoints() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of FreePoints

createGate() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of Gate

createGateState() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of Gate.State

createGatingComplex() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of GatingComplex

createGlobalSynapticProperties() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of GlobalSynapticProperties

createGlobalSynapticPropertiesSynapseTypeElement(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of GlobalSynapticProperties.SynapseTypeElement

createGridArrangement() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of GridArrangement

createGridArrangementSpacing() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of GridArrangement.Spacing

createGroupDetail() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of GroupDetail

createImplementationPrefs() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of ImplementationPrefs

createImplementationPrefsTableSettings() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of ImplementationPrefs.TableSettings

createInhomogeneousParam() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of InhomogeneousParam

createInhomogeneousParamDistal() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of InhomogeneousParam.Distal

createInhomogeneousParamProximal() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of InhomogeneousParam.Proximal

createInhomogeneousValue() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of InhomogeneousValue

createInitialisation() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of Initialisation

createInitialMembPotential() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of InitialMembPotential

createInput() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Input

createInputs() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Inputs

createInputSite() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of InputSite

createInputSitePattern() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of InputSitePattern

createInputSitePatternAllCells() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of InputSitePattern.AllCells

createInputSitePatternPercentageCells() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of InputSitePattern.PercentageCells

createInputSites() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of InputSites

createInputTarget() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of InputTarget

createInstances() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Instances

createIntegrateAndFire() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of IntegrateAndFire

createIonConcentration() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of IonConcentration

createIonProperties() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of IonProperties

createIonSpecies() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of IonSpecies

createLevel3Biophysics() - Method in class org.neuroml1.model.ObjectFactory

Create an instance of Level3Biophysics

createLevel3Cell() - Method in class org.neuroml1.model.ObjectFactory

Create an instance of Level3Cell

createLevel3Cells() - Method in class org.neuroml1.model.ObjectFactory

Create an instance of Level3Cells

createLevel3Connectivity() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Level3Connectivity

createLocalSynapticProperties() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of LocalSynapticProperties

createManifold() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Manifold

createMechanism() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of Mechanism

createModelDBReference() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of ModelDBReference

createMorphml(Morphology) - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of JAXBElement<Morphology>

createMorphology() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Morphology

createMorphologyFeatures() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Morphology.Features

createMorphologyGroupDetails() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Morphology.GroupDetails

createMorphologyPropertyDetails() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Morphology.PropertyDetails

createMultiDecaySynapse() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of MultiDecaySynapse

createNamedParameter() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of NamedParameter

createNetworkml(NetworkML) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<NetworkML>

createNetworkML() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of NetworkML

createNeuroml(NeuroMLLevel3) - Method in class org.neuroml1.model.ObjectFactory

Create an instance of JAXBElement<NeuroMLLevel3>

createNeuroMLLevel3() - Method in class org.neuroml1.model.ObjectFactory

Create an instance of NeuroMLLevel3

createNeuroMorphoRef() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of NeuroMorphoRef

createNeuronDBReference() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of NeuronDBReference

createNewInstance() - Method in class org.neuroml1.model.bio.Biophysics

createNewInstance() - Method in class org.neuroml1.model.bio.InhomogeneousValue

createNewInstance() - Method in class org.neuroml1.model.bio.InitialMembPotential

createNewInstance() - Method in class org.neuroml1.model.bio.IonProperties

createNewInstance() - Method in class org.neuroml1.model.bio.Mechanism

createNewInstance() - Method in class org.neuroml1.model.bio.NamedParameter

createNewInstance() - Method in class org.neuroml1.model.bio.SpecAxialResistance

createNewInstance() - Method in class org.neuroml1.model.bio.SpecCapacitance

createNewInstance() - Method in class org.neuroml1.model.bio.UnnamedParameter

createNewInstance() - Method in class org.neuroml1.model.bio.VariableNamedParameter

createNewInstance() - Method in class org.neuroml1.model.bio.VariableParameter

createNewInstance() - Method in class org.neuroml1.model.channel.Block

createNewInstance() - Method in class org.neuroml1.model.channel.BlockingSynapse

createNewInstance() - Method in class org.neuroml1.model.channel.ChannelML

createNewInstance() - Method in class org.neuroml1.model.channel.ChannelType

createNewInstance() - Method in class org.neuroml1.model.channel.ClosedState

createNewInstance() - Method in class org.neuroml1.model.channel.ConcDependence

createNewInstance() - Method in class org.neuroml1.model.channel.ConcFactor

createNewInstance() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

createNewInstance() - Method in class org.neuroml1.model.channel.DecayingPoolModel

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedHHGate

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedIon

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedKSGate

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedKSState

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedOhmic

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedParameter

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedTransition

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

createNewInstance() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

createNewInstance() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

createNewInstance() - Method in class org.neuroml1.model.channel.ElectricalSynapse

createNewInstance() - Method in class org.neuroml1.model.channel.FacDep

createNewInstance() - Method in class org.neuroml1.model.channel.FacDepSynapse

createNewInstance() - Method in class org.neuroml1.model.channel.FixedPoolInfo

createNewInstance() - Method in class org.neuroml1.model.channel.Gate

createNewInstance() - Method in class org.neuroml1.model.channel.Gate.State

createNewInstance() - Method in class org.neuroml1.model.channel.GatingComplex

createNewInstance() - Method in class org.neuroml1.model.channel.ImplementationPrefs

createNewInstance() - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

createNewInstance() - Method in class org.neuroml1.model.channel.Initialisation

createNewInstance() - Method in class org.neuroml1.model.channel.IntegrateAndFire

createNewInstance() - Method in class org.neuroml1.model.channel.IonConcentration

createNewInstance() - Method in class org.neuroml1.model.channel.IonSpecies

createNewInstance() - Method in class org.neuroml1.model.channel.MultiDecaySynapse

createNewInstance() - Method in class org.neuroml1.model.channel.Offset

createNewInstance() - Method in class org.neuroml1.model.channel.OpenState

createNewInstance() - Method in class org.neuroml1.model.channel.Parameter

createNewInstance() - Method in class org.neuroml1.model.channel.Parameters

createNewInstance() - Method in class org.neuroml1.model.channel.PoolVolumeInfo

createNewInstance() - Method in class org.neuroml1.model.channel.Q10Settings

createNewInstance() - Method in class org.neuroml1.model.channel.RateAdjustments

createNewInstance() - Method in class org.neuroml1.model.channel.StdpDep

createNewInstance() - Method in class org.neuroml1.model.channel.StdpSynapse

createNewInstance() - Method in class org.neuroml1.model.channel.SteadyState

createNewInstance() - Method in class org.neuroml1.model.channel.SynapseType

createNewInstance() - Method in class org.neuroml1.model.channel.TimeCourse

createNewInstance() - Method in class org.neuroml1.model.channel.Transition

createNewInstance() - Method in class org.neuroml1.model.Level3Biophysics

createNewInstance() - Method in class org.neuroml1.model.Level3Cell

createNewInstance() - Method in class org.neuroml1.model.Level3Cells

createNewInstance() - Method in class org.neuroml1.model.meta.Annotation

createNewInstance() - Method in class org.neuroml1.model.meta.Authors

createNewInstance() - Method in class org.neuroml1.model.meta.GroupDetail

createNewInstance() - Method in class org.neuroml1.model.meta.Manifold

createNewInstance() - Method in class org.neuroml1.model.meta.ModelDBReference

createNewInstance() - Method in class org.neuroml1.model.meta.NeuroMorphoRef

createNewInstance() - Method in class org.neuroml1.model.meta.NeuronDBReference

createNewInstance() - Method in class org.neuroml1.model.meta.NonSpatialGrid

createNewInstance() - Method in class org.neuroml1.model.meta.Person

createNewInstance() - Method in class org.neuroml1.model.meta.Point

createNewInstance() - Method in class org.neuroml1.model.meta.Point3D

createNewInstance() - Method in class org.neuroml1.model.meta.Points

createNewInstance() - Method in class org.neuroml1.model.meta.Polygon

createNewInstance() - Method in class org.neuroml1.model.meta.Polyhedron

createNewInstance() - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

createNewInstance() - Method in class org.neuroml1.model.meta.Properties

createNewInstance() - Method in class org.neuroml1.model.meta.Property

createNewInstance() - Method in class org.neuroml1.model.meta.PropertyDetail

createNewInstance() - Method in class org.neuroml1.model.meta.Publication

createNewInstance() - Method in class org.neuroml1.model.meta.RectangularBox

createNewInstance() - Method in class org.neuroml1.model.meta.RectangularBox.Size

createNewInstance() - Method in class org.neuroml1.model.meta.Sphere

createNewInstance() - Method in class org.neuroml1.model.meta.Status

createNewInstance() - Method in class org.neuroml1.model.morph.Cable

createNewInstance() - Method in class org.neuroml1.model.morph.CableGroup.Cable

createNewInstance() - Method in class org.neuroml1.model.morph.CableGroup

createNewInstance() - Method in class org.neuroml1.model.morph.Cell.Cables

createNewInstance() - Method in class org.neuroml1.model.morph.Cell.CellBody

createNewInstance() - Method in class org.neuroml1.model.morph.Cell

createNewInstance() - Method in class org.neuroml1.model.morph.Cell.Segments

createNewInstance() - Method in class org.neuroml1.model.morph.Cell.Spines

createNewInstance() - Method in class org.neuroml1.model.morph.Cells

createNewInstance() - Method in class org.neuroml1.model.morph.Feature

createNewInstance() - Method in class org.neuroml1.model.morph.FreePoints

createNewInstance() - Method in class org.neuroml1.model.morph.InhomogeneousParam

createNewInstance() - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

createNewInstance() - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

createNewInstance() - Method in class org.neuroml1.model.morph.Morphology

createNewInstance() - Method in class org.neuroml1.model.morph.Morphology.Features

createNewInstance() - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

createNewInstance() - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

createNewInstance() - Method in class org.neuroml1.model.morph.Path

createNewInstance() - Method in class org.neuroml1.model.morph.Segment

createNewInstance() - Method in class org.neuroml1.model.morph.Spine

createNewInstance() - Method in class org.neuroml1.model.network.CellInstance

createNewInstance() - Method in class org.neuroml1.model.network.Connection

createNewInstance() - Method in class org.neuroml1.model.network.Connections

createNewInstance() - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

createNewInstance() - Method in class org.neuroml1.model.network.ConnectivityPattern

createNewInstance() - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

createNewInstance() - Method in class org.neuroml1.model.network.GlobalSynapticProperties

createNewInstance() - Method in class org.neuroml1.model.network.GridArrangement

createNewInstance() - Method in class org.neuroml1.model.network.GridArrangement.Spacing

createNewInstance() - Method in class org.neuroml1.model.network.Input

createNewInstance() - Method in class org.neuroml1.model.network.Inputs

createNewInstance() - Method in class org.neuroml1.model.network.InputSite

createNewInstance() - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

createNewInstance() - Method in class org.neuroml1.model.network.InputSitePattern

createNewInstance() - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

createNewInstance() - Method in class org.neuroml1.model.network.InputSites

createNewInstance() - Method in class org.neuroml1.model.network.InputTarget

createNewInstance() - Method in class org.neuroml1.model.network.Instances

createNewInstance() - Method in class org.neuroml1.model.network.Level3Connectivity

createNewInstance() - Method in class org.neuroml1.model.network.LocalSynapticProperties

createNewInstance() - Method in class org.neuroml1.model.network.NetworkML

createNewInstance() - Method in class org.neuroml1.model.network.PerCellConnection

createNewInstance() - Method in class org.neuroml1.model.network.Population

createNewInstance() - Method in class org.neuroml1.model.network.PopulationLocation

createNewInstance() - Method in class org.neuroml1.model.network.Populations

createNewInstance() - Method in class org.neuroml1.model.network.PotentialSynapticLocation

createNewInstance() - Method in class org.neuroml1.model.network.PotentialSynLoc

createNewInstance() - Method in class org.neuroml1.model.network.Projection

createNewInstance() - Method in class org.neuroml1.model.network.Projections

createNewInstance() - Method in class org.neuroml1.model.network.PulseInput

createNewInstance() - Method in class org.neuroml1.model.network.RandomArrangement

createNewInstance() - Method in class org.neuroml1.model.network.RandomStim

createNewInstance() - Method in class org.neuroml1.model.network.RandomStimInstance

createNewInstance() - Method in class org.neuroml1.model.network.SynapseInternalProperties

createNewInstance() - Method in class org.neuroml1.model.network.SynapseProperties

createNewInstance() - Method in class org.neuroml1.model.network.SynapticLocation

createNewInstance() - Method in class org.neuroml1.model.NeuroMLLevel3

createNonSpatialGrid() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of NonSpatialGrid

createOffset() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of Offset

createOpenState() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of OpenState

createParameter() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of Parameter

createParameters() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of Parameters

createPath() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Path

createPerCellConnection() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of PerCellConnection

createPerson() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Person

createPoint() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Point

createPoint3D() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Point3D

createPoints() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Points

createPolygon() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Polygon

createPolyhedron() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Polyhedron

createPolyhedronPolygons() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Polyhedron.Polygons

createPoolVolumeInfo() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of PoolVolumeInfo

createPopulation() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Population

createPopulationCellTypeElement(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Population.CellTypeElement

createPopulationLocation() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of PopulationLocation

createPopulations() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Populations

createPotentialSynapticLocation() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of PotentialSynapticLocation

createPotentialSynapticLocationAnnotation(Annotation) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<Annotation>

createPotentialSynapticLocationGroup(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<String>

createPotentialSynapticLocationGroupElementPSL2(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of PotentialSynapticLocation.GroupElementPSL2

createPotentialSynapticLocationNotes(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<String>

createPotentialSynapticLocationProperties(Properties) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<Properties>

createPotentialSynapticLocationSynapseDirection(SynapseDirection) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<SynapseDirection>

createPotentialSynapticLocationSynapseType(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<String>

createPotentialSynLoc() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of PotentialSynLoc

createPotentialSynLocAnnotation(Annotation) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<Annotation>

createPotentialSynLocGroup(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<String>

createPotentialSynLocGroupElementPSL1(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of PotentialSynLoc.GroupElementPSL1

createPotentialSynLocNotes(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<String>

createPotentialSynLocProperties(Properties) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of JAXBElement<Properties>

createProjection() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Projection

createProjections() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Projections

createProjectionSourceElement(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Projection.SourceElement

createProjectionTargetElement(String) - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of Projection.TargetElement

createProperties() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Properties

createProperty() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Property

createPropertyDetail() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of PropertyDetail

createPublication() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Publication

createPulseInput() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of PulseInput

createQ10Settings() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of Q10Settings

createRandomArrangement() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of RandomArrangement

createRandomStim() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of RandomStim

createRandomStimInstance() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of RandomStimInstance

createRateAdjustments() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of RateAdjustments

createRectangularBox() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of RectangularBox

createRectangularBoxSize() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of RectangularBox.Size

createSegment() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Segment

createSpecAxialResistance() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of SpecAxialResistance

createSpecCapacitance() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of SpecCapacitance

createSphere() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Sphere

createSpine() - Method in class org.neuroml1.model.morph.ObjectFactory

Create an instance of Spine

createStatus() - Method in class org.neuroml1.model.meta.ObjectFactory

Create an instance of Status

createStdpDep() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of StdpDep

createStdpSynapse() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of StdpSynapse

createSteadyState() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of SteadyState

createSynapseInternalProperties() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of SynapseInternalProperties

createSynapseProperties() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of SynapseProperties

createSynapseType() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of SynapseType

createSynapticLocation() - Method in class org.neuroml1.model.network.ObjectFactory

Create an instance of SynapticLocation

createTimeCourse() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of TimeCourse

createTransition() - Method in class org.neuroml1.model.channel.ObjectFactory

Create an instance of Transition

createUnnamedParameter() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of UnnamedParameter

createVariableNamedParameter() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of VariableNamedParameter

createVariableParameter() - Method in class org.neuroml1.model.bio.ObjectFactory

Create an instance of VariableParameter

CUBIC_MILLIMETER - Enum constant in enum org.neuroml1.model.meta.VolumeUnits

currentVoltageRelation - Variable in class org.neuroml1.model.channel.ChannelType

CurrentVoltageRelation - Class in org.neuroml1.model.channel

How the current through the channel depends on the conductance of the channel.

CurrentVoltageRelation() - Constructor for class org.neuroml1.model.channel.CurrentVoltageRelation

D

decayConstant - Variable in class org.neuroml1.model.channel.DecayingPoolModel

decayConstantAttribute - Variable in class org.neuroml1.model.channel.DecayingPoolModel

decayingPoolModel - Variable in class org.neuroml1.model.channel.IonConcentration

DecayingPoolModel - Class in org.neuroml1.model.channel

Element for parameters in a decaying pool model of ion concentration (e.g.

DecayingPoolModel() - Constructor for class org.neuroml1.model.channel.DecayingPoolModel

decayTime - Variable in class org.neuroml1.model.channel.DoubleExponentialSynapse

decayTime2 - Variable in class org.neuroml1.model.channel.MultiDecaySynapse

decayTime3 - Variable in class org.neuroml1.model.channel.MultiDecaySynapse

defaultErev - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

defaultErev - Variable in class org.neuroml1.model.channel.DeprecatedIon

defaultGmax - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

defaultGmax - Variable in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

defaultValues - Variable in class org.neuroml1.model.network.GlobalSynapticProperties

defaultValues - Variable in class org.neuroml1.model.network.SynapseProperties

delay - Variable in class org.neuroml1.model.network.PulseInput

delWeightLtd - Variable in class org.neuroml1.model.channel.StdpDep

delWeightLtp - Variable in class org.neuroml1.model.channel.StdpDep

density - Variable in class org.neuroml1.model.channel.ChannelType

DEPRECATED - Enum constant in enum org.neuroml1.model.meta.StatusValue

File uses constructs which have been superceded in current version of specification

DeprecatedAkdEquation - Class in org.neuroml1.model.channel

Definition of a type of rate constant equation which takes parameters A, k, d and maps to either exponential, sigmoidal or linoidal.

DeprecatedAkdEquation() - Constructor for class org.neuroml1.model.channel.DeprecatedAkdEquation

DeprecatedCoreEquationType - Enum in org.neuroml1.model.channel

Java class for Deprecated_CoreEquationType.

DeprecatedGenericEquation - Class in org.neuroml1.model.channel

Definition of a type of rate constant equation

DeprecatedGenericEquation() - Constructor for class org.neuroml1.model.channel.DeprecatedGenericEquation

DeprecatedHHGate - Class in org.neuroml1.model.channel

Gate with Hodgkin Huxley like state transitions

DeprecatedHHGate() - Constructor for class org.neuroml1.model.channel.DeprecatedHHGate

DeprecatedIon - Class in org.neuroml1.model.channel

Definition of an ion which is involved in this channel mechanism.

DeprecatedIon() - Constructor for class org.neuroml1.model.channel.DeprecatedIon

DeprecatedIonRole - Enum in org.neuroml1.model.channel

Java class for Deprecated_IonRole.

DeprecatedKSGate - Class in org.neuroml1.model.channel

Gate with kinetic scheme transitions

DeprecatedKSGate() - Constructor for class org.neuroml1.model.channel.DeprecatedKSGate

DeprecatedKSState - Class in org.neuroml1.model.channel

Single kinetic scheme state.

DeprecatedKSState() - Constructor for class org.neuroml1.model.channel.DeprecatedKSState

DeprecatedOhmic - Class in org.neuroml1.model.channel

Signifies an ohmic relation; the current is proportional to the potential difference across the channel.

DeprecatedOhmic() - Constructor for class org.neuroml1.model.channel.DeprecatedOhmic

DeprecatedOhmic.Conductance - Class in org.neuroml1.model.channel

Java class for anonymous complex type.

DeprecatedParameter - Class in org.neuroml1.model.channel

Generic parameter used in rate equations

DeprecatedParameter() - Constructor for class org.neuroml1.model.channel.DeprecatedParameter

DeprecatedRateConstantEqn - Class in org.neuroml1.model.channel

Definition of a rate constant equation.

DeprecatedRateConstantEqn() - Constructor for class org.neuroml1.model.channel.DeprecatedRateConstantEqn

DeprecatedRateConstantEqnChoice - Class in org.neuroml1.model.channel

Choice of the various rate constant expressions allowed

DeprecatedRateConstantEqnChoice() - Constructor for class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

DeprecatedRateConstVoltConcDep - Class in org.neuroml1.model.channel

Rate constant expressions allowed for voltage and conc dependent channels.

DeprecatedRateConstVoltConcDep() - Constructor for class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

DeprecatedTransition - Class in org.neuroml1.model.channel

Deprecated since v1.7.3.

DeprecatedTransition() - Constructor for class org.neuroml1.model.channel.DeprecatedTransition

DeprecatedVoltageConcGate - Class in org.neuroml1.model.channel

Definition of a mechanics of a gate which depends on voltage and concentration (e.g.

DeprecatedVoltageConcGate() - Constructor for class org.neuroml1.model.channel.DeprecatedVoltageConcGate

DeprecatedVoltageGate - Class in org.neuroml1.model.channel

Definition of a voltage gate.

DeprecatedVoltageGate() - Constructor for class org.neuroml1.model.channel.DeprecatedVoltageGate

depth - Variable in class org.neuroml1.model.meta.RectangularBox.Size

description - Variable in class org.neuroml1.model.meta.GroupDetail

description - Variable in class org.neuroml1.model.meta.PropertyDetail

diameter - Variable in class org.neuroml1.model.meta.Point

direction - Variable in class org.neuroml1.model.network.PerCellConnection

distal - Variable in class org.neuroml1.model.morph.InhomogeneousParam

distal - Variable in class org.neuroml1.model.morph.Segment

distal - Variable in class org.neuroml1.model.morph.Spine

Distal() - Constructor for class org.neuroml1.model.morph.InhomogeneousParam.Distal

doubExpSyn - Variable in class org.neuroml1.model.channel.SynapseType

DoubleExponentialSynapse - Class in org.neuroml1.model.channel

A basic synaptic mechanism with a double exponential conductance time course.

DoubleExponentialSynapse() - Constructor for class org.neuroml1.model.channel.DoubleExponentialSynapse

duration - Variable in class org.neuroml1.model.network.PulseInput

E

electricalSyn - Variable in class org.neuroml1.model.channel.SynapseType

ElectricalSynapse - Class in org.neuroml1.model.channel

Electrical synaptic coupling as at a gap junction.

ElectricalSynapse() - Constructor for class org.neuroml1.model.channel.ElectricalSynapse

email - Variable in class org.neuroml1.model.meta.Person

equals(Object) - Method in class org.neuroml1.model.bio.Biophysics

equals(Object) - Method in class org.neuroml1.model.bio.InhomogeneousValue

equals(Object) - Method in class org.neuroml1.model.bio.InitialMembPotential

equals(Object) - Method in class org.neuroml1.model.bio.IonProperties

equals(Object) - Method in class org.neuroml1.model.bio.Mechanism

equals(Object) - Method in class org.neuroml1.model.bio.NamedParameter

equals(Object) - Method in class org.neuroml1.model.bio.SpecAxialResistance

equals(Object) - Method in class org.neuroml1.model.bio.SpecCapacitance

equals(Object) - Method in class org.neuroml1.model.bio.UnnamedParameter

equals(Object) - Method in class org.neuroml1.model.bio.VariableNamedParameter

equals(Object) - Method in class org.neuroml1.model.bio.VariableParameter

equals(Object) - Method in class org.neuroml1.model.channel.Block

equals(Object) - Method in class org.neuroml1.model.channel.BlockingSynapse

equals(Object) - Method in class org.neuroml1.model.channel.ChannelML

equals(Object) - Method in class org.neuroml1.model.channel.ChannelType

equals(Object) - Method in class org.neuroml1.model.channel.ClosedState

equals(Object) - Method in class org.neuroml1.model.channel.ConcDependence

equals(Object) - Method in class org.neuroml1.model.channel.ConcFactor

equals(Object) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

equals(Object) - Method in class org.neuroml1.model.channel.DecayingPoolModel

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedHHGate

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedIon

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedKSGate

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedKSState

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedOhmic

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedParameter

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedTransition

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

equals(Object) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

equals(Object) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

equals(Object) - Method in class org.neuroml1.model.channel.ElectricalSynapse

equals(Object) - Method in class org.neuroml1.model.channel.FacDep

equals(Object) - Method in class org.neuroml1.model.channel.FacDepSynapse

equals(Object) - Method in class org.neuroml1.model.channel.FixedPoolInfo

equals(Object) - Method in class org.neuroml1.model.channel.Gate

equals(Object) - Method in class org.neuroml1.model.channel.Gate.State

equals(Object) - Method in class org.neuroml1.model.channel.GatingComplex

equals(Object) - Method in class org.neuroml1.model.channel.ImplementationPrefs

equals(Object) - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

equals(Object) - Method in class org.neuroml1.model.channel.Initialisation

equals(Object) - Method in class org.neuroml1.model.channel.IntegrateAndFire

equals(Object) - Method in class org.neuroml1.model.channel.IonConcentration

equals(Object) - Method in class org.neuroml1.model.channel.IonSpecies

equals(Object) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

equals(Object) - Method in class org.neuroml1.model.channel.Offset

equals(Object) - Method in class org.neuroml1.model.channel.OpenState

equals(Object) - Method in class org.neuroml1.model.channel.Parameter

equals(Object) - Method in class org.neuroml1.model.channel.Parameters

equals(Object) - Method in class org.neuroml1.model.channel.PoolVolumeInfo

equals(Object) - Method in class org.neuroml1.model.channel.Q10Settings

equals(Object) - Method in class org.neuroml1.model.channel.RateAdjustments

equals(Object) - Method in class org.neuroml1.model.channel.StdpDep

equals(Object) - Method in class org.neuroml1.model.channel.StdpSynapse

equals(Object) - Method in class org.neuroml1.model.channel.SteadyState

equals(Object) - Method in class org.neuroml1.model.channel.SynapseType

equals(Object) - Method in class org.neuroml1.model.channel.TimeCourse

equals(Object) - Method in class org.neuroml1.model.channel.Transition

equals(Object) - Method in class org.neuroml1.model.Level3Biophysics

equals(Object) - Method in class org.neuroml1.model.Level3Cell

equals(Object) - Method in class org.neuroml1.model.Level3Cells

equals(Object) - Method in class org.neuroml1.model.meta.Annotation

equals(Object) - Method in class org.neuroml1.model.meta.Authors

equals(Object) - Method in class org.neuroml1.model.meta.GroupDetail

equals(Object) - Method in class org.neuroml1.model.meta.Manifold

equals(Object) - Method in class org.neuroml1.model.meta.ModelDBReference

equals(Object) - Method in class org.neuroml1.model.meta.NeuroMorphoRef

equals(Object) - Method in class org.neuroml1.model.meta.NeuronDBReference

equals(Object) - Method in class org.neuroml1.model.meta.NonSpatialGrid

equals(Object) - Method in class org.neuroml1.model.meta.Person

equals(Object) - Method in class org.neuroml1.model.meta.Point

equals(Object) - Method in class org.neuroml1.model.meta.Point3D

equals(Object) - Method in class org.neuroml1.model.meta.Points

equals(Object) - Method in class org.neuroml1.model.meta.Polygon

equals(Object) - Method in class org.neuroml1.model.meta.Polyhedron

equals(Object) - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

equals(Object) - Method in class org.neuroml1.model.meta.Properties

equals(Object) - Method in class org.neuroml1.model.meta.Property

equals(Object) - Method in class org.neuroml1.model.meta.PropertyDetail

equals(Object) - Method in class org.neuroml1.model.meta.Publication

equals(Object) - Method in class org.neuroml1.model.meta.RectangularBox

equals(Object) - Method in class org.neuroml1.model.meta.RectangularBox.Size

equals(Object) - Method in class org.neuroml1.model.meta.Sphere

equals(Object) - Method in class org.neuroml1.model.meta.Status

equals(Object) - Method in class org.neuroml1.model.morph.Cable

equals(Object) - Method in class org.neuroml1.model.morph.CableGroup.Cable

equals(Object) - Method in class org.neuroml1.model.morph.CableGroup

equals(Object) - Method in class org.neuroml1.model.morph.Cell.Cables

equals(Object) - Method in class org.neuroml1.model.morph.Cell.CellBody

equals(Object) - Method in class org.neuroml1.model.morph.Cell

equals(Object) - Method in class org.neuroml1.model.morph.Cell.Segments

equals(Object) - Method in class org.neuroml1.model.morph.Cell.Spines

equals(Object) - Method in class org.neuroml1.model.morph.Cells

equals(Object) - Method in class org.neuroml1.model.morph.Feature

equals(Object) - Method in class org.neuroml1.model.morph.FreePoints

equals(Object) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

equals(Object) - Method in class org.neuroml1.model.morph.InhomogeneousParam

equals(Object) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

equals(Object) - Method in class org.neuroml1.model.morph.Morphology

equals(Object) - Method in class org.neuroml1.model.morph.Morphology.Features

equals(Object) - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

equals(Object) - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

equals(Object) - Method in class org.neuroml1.model.morph.Path

equals(Object) - Method in class org.neuroml1.model.morph.Segment

equals(Object) - Method in class org.neuroml1.model.morph.Spine

equals(Object) - Method in class org.neuroml1.model.network.CellInstance

equals(Object) - Method in class org.neuroml1.model.network.Connection

equals(Object) - Method in class org.neuroml1.model.network.Connections

equals(Object) - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

equals(Object) - Method in class org.neuroml1.model.network.ConnectivityPattern

equals(Object) - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

equals(Object) - Method in class org.neuroml1.model.network.GlobalSynapticProperties

equals(Object) - Method in class org.neuroml1.model.network.GridArrangement

equals(Object) - Method in class org.neuroml1.model.network.GridArrangement.Spacing

equals(Object) - Method in class org.neuroml1.model.network.Input

equals(Object) - Method in class org.neuroml1.model.network.Inputs

equals(Object) - Method in class org.neuroml1.model.network.InputSite

equals(Object) - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

equals(Object) - Method in class org.neuroml1.model.network.InputSitePattern

equals(Object) - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

equals(Object) - Method in class org.neuroml1.model.network.InputSites

equals(Object) - Method in class org.neuroml1.model.network.InputTarget

equals(Object) - Method in class org.neuroml1.model.network.Instances

equals(Object) - Method in class org.neuroml1.model.network.Level3Connectivity

equals(Object) - Method in class org.neuroml1.model.network.LocalSynapticProperties

equals(Object) - Method in class org.neuroml1.model.network.NetworkML

equals(Object) - Method in class org.neuroml1.model.network.PerCellConnection

equals(Object) - Method in class org.neuroml1.model.network.Population

equals(Object) - Method in class org.neuroml1.model.network.PopulationLocation

equals(Object) - Method in class org.neuroml1.model.network.Populations

equals(Object) - Method in class org.neuroml1.model.network.PotentialSynapticLocation

equals(Object) - Method in class org.neuroml1.model.network.PotentialSynLoc

equals(Object) - Method in class org.neuroml1.model.network.Projection

equals(Object) - Method in class org.neuroml1.model.network.Projections

equals(Object) - Method in class org.neuroml1.model.network.PulseInput

equals(Object) - Method in class org.neuroml1.model.network.RandomArrangement

equals(Object) - Method in class org.neuroml1.model.network.RandomStim

equals(Object) - Method in class org.neuroml1.model.network.RandomStimInstance

equals(Object) - Method in class org.neuroml1.model.network.SynapseInternalProperties

equals(Object) - Method in class org.neuroml1.model.network.SynapseProperties

equals(Object) - Method in class org.neuroml1.model.network.SynapticLocation

equals(Object) - Method in class org.neuroml1.model.NeuroMLLevel3

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.Biophysics

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.InhomogeneousValue

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.InitialMembPotential

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.IonProperties

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.Mechanism

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.NamedParameter

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.SpecAxialResistance

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.SpecCapacitance

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.UnnamedParameter

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.VariableNamedParameter

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.bio.VariableParameter

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.Block

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.BlockingSynapse

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.ChannelML

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.ChannelType

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.ClosedState

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.ConcDependence

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.ConcFactor

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DecayingPoolModel

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedHHGate

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedIon

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedKSGate

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedKSState

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedOhmic

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedParameter

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedTransition

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.ElectricalSynapse

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.FacDep

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.FacDepSynapse

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.FixedPoolInfo

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.Gate

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.Gate.State

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.GatingComplex

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.ImplementationPrefs

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.Initialisation

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.IntegrateAndFire

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.IonConcentration

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.IonSpecies

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.Offset

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.OpenState

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.Parameter

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.Parameters

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.PoolVolumeInfo

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.Q10Settings

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.RateAdjustments

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.StdpDep

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.StdpSynapse

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.SteadyState

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.SynapseType

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.TimeCourse

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.channel.Transition

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.Level3Biophysics

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.Level3Cell

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.Level3Cells

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Annotation

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Authors

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.GroupDetail

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Manifold

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.ModelDBReference

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.NeuroMorphoRef

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.NeuronDBReference

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.NonSpatialGrid

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Person

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Point

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Point3D

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Points

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Polygon

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Polyhedron

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Properties

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Property

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.PropertyDetail

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Publication

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.RectangularBox

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.RectangularBox.Size

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Sphere

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.meta.Status

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Cable

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.CableGroup.Cable

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.CableGroup

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Cell.Cables

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Cell.CellBody

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Cell

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Cell.Segments

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Cell.Spines

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Cells

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Feature

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.FreePoints

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Morphology

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Morphology.Features

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Path

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Segment

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.morph.Spine

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.CellInstance

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.Connection

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.Connections

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.GlobalSynapticProperties

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.GridArrangement

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.GridArrangement.Spacing

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.Input

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.Inputs

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.InputSite

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.InputSites

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.InputTarget

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.Instances

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.Level3Connectivity

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.LocalSynapticProperties

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.NetworkML

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.PerCellConnection

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.Population

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.PopulationLocation

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.Populations

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.PotentialSynapticLocation

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.PotentialSynLoc

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.Projection

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.Projections

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.PulseInput

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.RandomArrangement

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.RandomStim

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.RandomStimInstance

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.SynapseInternalProperties

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.SynapseProperties

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.network.SynapticLocation

equals(ObjectLocator, ObjectLocator, Object, EqualsStrategy2) - Method in class org.neuroml1.model.NeuroMLLevel3

eta - Variable in class org.neuroml1.model.channel.Block

EXP_LINEAR - Enum constant in enum org.neuroml1.model.channel.CoreEquationType

Of the form: A * ((v-V1/2)/B) / (1 - exp(-((v-V1/2)/B)))

experimentalTemp - Variable in class org.neuroml1.model.channel.Q10Settings

EXPONENTIAL - Enum constant in enum org.neuroml1.model.channel.CoreEquationType

Of the form: A * exp((v-V1/2)/B)

EXPONENTIAL - Enum constant in enum org.neuroml1.model.channel.DeprecatedCoreEquationType

Of the form: A * exp(k * (v-d))

expr - Variable in class org.neuroml1.model.channel.ConcFactor

expr - Variable in class org.neuroml1.model.channel.DeprecatedGenericEquation

expr - Variable in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

expr - Variable in class org.neuroml1.model.channel.SteadyState

expr - Variable in class org.neuroml1.model.channel.TimeCourse

expr - Variable in class org.neuroml1.model.channel.Transition

exprForm - Variable in class org.neuroml1.model.channel.SteadyState

exprForm - Variable in class org.neuroml1.model.channel.TimeCourse

exprForm - Variable in class org.neuroml1.model.channel.Transition

F

FacDep - Class in org.neuroml1.model.channel

Facilitating and depressing synaptic parameters.

FacDep() - Constructor for class org.neuroml1.model.channel.FacDep

facDepSyn - Variable in class org.neuroml1.model.channel.SynapseType

FacDepSynapse - Class in org.neuroml1.model.channel

A synaptic type with facilitating and depressing amplitude.

FacDepSynapse() - Constructor for class org.neuroml1.model.channel.FacDepSynapse

feature - Variable in class org.neuroml1.model.morph.Morphology.Features

Feature - Class in org.neuroml1.model.morph

The group of things allowed in features.

Feature() - Constructor for class org.neuroml1.model.morph.Feature

features - Variable in class org.neuroml1.model.morph.Morphology

Features() - Constructor for class org.neuroml1.model.morph.Morphology.Features

fixedErev - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

fixedPoolInfo - Variable in class org.neuroml1.model.channel.DecayingPoolModel

FixedPoolInfo - Class in org.neuroml1.model.channel

(IN PROGRESS, not stable!!!!) In this case the parameter which determines how quickly the internal pool 'fills' is given as a fixed value.

FixedPoolInfo() - Constructor for class org.neuroml1.model.channel.FixedPoolInfo

fixedProbability - Variable in class org.neuroml1.model.network.ConnectivityPattern

FixedProbability() - Constructor for class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

fixedQ10 - Variable in class org.neuroml1.model.channel.Q10Settings

fractAlongParent - Variable in class org.neuroml1.model.morph.Cable

fractAlongParentAttribute - Variable in class org.neuroml1.model.morph.Cable

fraction - Variable in class org.neuroml1.model.channel.Gate.State

fraction - Variable in class org.neuroml1.model.channel.OpenState

fractionAlong - Variable in class org.neuroml1.model.network.InputSite

fractionAlong - Variable in class org.neuroml1.model.network.SynapticLocation

freePoints - Variable in class org.neuroml1.model.morph.Cell

freePoints - Variable in class org.neuroml1.model.morph.Feature

FreePoints - Class in org.neuroml1.model.morph

A set of varicosities or synaptic connections.

FreePoints() - Constructor for class org.neuroml1.model.morph.FreePoints

frequency - Variable in class org.neuroml1.model.network.RandomStim

frequency - Variable in class org.neuroml1.model.network.RandomStimInstance

from - Variable in class org.neuroml1.model.channel.SteadyState

from - Variable in class org.neuroml1.model.channel.TimeCourse

from - Variable in class org.neuroml1.model.channel.Transition

fromValue(String) - Static method in enum org.neuroml1.model.bio.MechanismType

fromValue(String) - Static method in enum org.neuroml1.model.channel.ConductanceLaw

fromValue(String) - Static method in enum org.neuroml1.model.channel.CoreEquationType

fromValue(String) - Static method in enum org.neuroml1.model.channel.DeprecatedCoreEquationType

fromValue(String) - Static method in enum org.neuroml1.model.channel.DeprecatedIonRole

fromValue(String) - Static method in enum org.neuroml1.model.meta.LengthUnits

fromValue(String) - Static method in enum org.neuroml1.model.meta.StatusValue

fromValue(String) - Static method in enum org.neuroml1.model.meta.Units

fromValue(String) - Static method in enum org.neuroml1.model.meta.VolumeUnits

fromValue(String) - Static method in enum org.neuroml1.model.meta.YesNo

fromValue(String) - Static method in enum org.neuroml1.model.morph.SpineShape

fromValue(String) - Static method in enum org.neuroml1.model.network.SynapseDirection

fullTitle - Variable in class org.neuroml1.model.meta.Publication

G

gamma - Variable in class org.neuroml1.model.channel.Block

gamma - Variable in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

gamma - Variable in class org.neuroml1.model.channel.DeprecatedVoltageGate

gate - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

gate - Variable in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

gate - Variable in class org.neuroml1.model.channel.Q10Settings

Gate - Class in org.neuroml1.model.channel

Definition of a single voltage/concentration dependent gate

Gate() - Constructor for class org.neuroml1.model.channel.Gate

Gate.State - Class in org.neuroml1.model.channel

Java class for anonymous complex type.

GatingComplex - Class in org.neuroml1.model.channel

Preferred element for defining a gate since v1.7.3.

GatingComplex() - Constructor for class org.neuroml1.model.channel.GatingComplex

generic - Variable in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

generic - Variable in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

GENERIC - Enum constant in enum org.neuroml1.model.channel.CoreEquationType

A generic expression for the rates.

genericEquationHh - Variable in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

genericEquationHh - Variable in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

getAllCells() - Method in class org.neuroml1.model.network.InputSitePattern

Gets the value of the allCells property.

getAllToAll() - Method in class org.neuroml1.model.network.ConnectivityPattern

Gets the value of the allToAll property.

getAlpha() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Gets the value of the alpha property.

getAlpha() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Gets the value of the alpha property.

getAmplitude() - Method in class org.neuroml1.model.network.PulseInput

Gets the value of the amplitude property.

getAnnotation() - Method in class org.neuroml1.model.channel.ChannelML

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.channel.DeprecatedIon

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.channel.DeprecatedParameter

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.channel.ElectricalSynapse

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.morph.Cable

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.morph.Cell.Cables

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.morph.Cell.CellBody

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.morph.Cell.Segments

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.morph.Cell.Spines

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.morph.Morphology.Features

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.CellInstance

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.Connections

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.GridArrangement

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.Input

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.Inputs

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.InputSites

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.InputTarget

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.Instances

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.Population

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.PopulationLocation

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.Populations

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.Projection

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.Projections

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.RandomArrangement

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.SynapseInternalProperties

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.network.SynapseProperties

Gets the value of the annotation property.

getAnnotation() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the annotation property.

getAny() - Method in class org.neuroml1.model.meta.Annotation

Gets the value of the any property.

getAuthorList() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the authorList property.

getAuthorList() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the authorList property.

getAuthorList() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the authorList property.

getAuthorList() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the authorList property.

getAuthorList() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the authorList property.

getBeta() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Gets the value of the beta property.

getBeta() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Gets the value of the beta property.

getBiophysics() - Method in class org.neuroml1.model.Level3Cell

Gets the value of the biophysics property.

getBlock() - Method in class org.neuroml1.model.channel.BlockingSynapse

Gets the value of the block property.

getBlockingSyn() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the blockingSyn property.

getCable() - Method in class org.neuroml1.model.morph.CableGroup

Gets the value of the cable property.

getCable() - Method in class org.neuroml1.model.morph.Cell.Cables

Gets the value of the cable property.

getCable() - Method in class org.neuroml1.model.morph.Segment

Gets the value of the cable property.

getCablegroup() - Method in class org.neuroml1.model.morph.Cell.Cables

Gets the value of the cablegroup property.

getCableList() - Method in class org.neuroml1.model.morph.Cell

Get the list of cables for this Cell.

getCables() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the cables property.

getCeiling() - Method in class org.neuroml1.model.channel.DecayingPoolModel

Gets the value of the ceiling property.

getCeilingAttribute() - Method in class org.neuroml1.model.channel.DecayingPoolModel

Gets the value of the ceilingAttribute property.

getCell() - Method in class org.neuroml1.model.Level3Cells

Gets the value of the cell property.

getCell() - Method in class org.neuroml1.model.morph.Cells

Gets the value of the cell property.

getCellBody() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the cellBody property.

getCellGroup() - Method in class org.neuroml1.model.network.InputTarget

Gets the value of the cellGroup property.

getCellId() - Method in class org.neuroml1.model.network.InputSite

Gets the value of the cellId property.

getCellId() - Method in class org.neuroml1.model.network.SynapticLocation

Gets the value of the cellId property.

getCellList() - Method in class org.neuroml1.model.morph.Morphology

Gets the list of cells for this Morphology.

getCellList() - Method in class org.neuroml1.model.NeuroMLLevel3

Get the list of cells in this NeuroML file

getCells() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the cells property.

getCells() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the cells property.

getCellType() - Method in class org.neuroml1.model.network.Population

Gets the value of the cellType property.

getCellTypeAttribute() - Method in class org.neuroml1.model.network.Population

Gets the value of the cellTypeAttribute property.

getCenter() - Method in class org.neuroml1.model.meta.Sphere

Gets the value of the center property.

getChannelMLMapper() - Static method in class org.neuroml1.model.util.NeuroMLNamespacePrefixMapper

getChannels() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the channels property.

getChannelType() - Method in class org.neuroml1.model.channel.ChannelML

Gets the value of the channelType property.

getChannelTypeByName(String) - Method in class org.neuroml1.model.channel.ChannelML

Gets a channel type by name, or null if no such channel exists.

getCharge() - Method in class org.neuroml1.model.channel.ConcDependence

Gets the value of the charge property.

getCharge() - Method in class org.neuroml1.model.channel.ConcFactor

Gets the value of the charge property.

getCharge() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the charge property.

getCharge() - Method in class org.neuroml1.model.channel.DeprecatedIon

Gets the value of the charge property.

getClosedState() - Method in class org.neuroml1.model.channel.GatingComplex

Gets the value of the closedState property.

getComment() - Method in class org.neuroml1.model.channel.ImplementationPrefs

Gets the value of the comment property.

getComment() - Method in class org.neuroml1.model.meta.ModelDBReference

Gets the value of the comment property.

getComment() - Method in class org.neuroml1.model.meta.NeuroMorphoRef

Gets the value of the comment property.

getComment() - Method in class org.neuroml1.model.meta.NeuronDBReference

Gets the value of the comment property.

getComment() - Method in class org.neuroml1.model.meta.Person

Gets the value of the comment property.

getComment() - Method in class org.neuroml1.model.meta.Publication

Gets the value of the comment property.

getComment() - Method in class org.neuroml1.model.meta.Status

Gets the value of the comment property.

getConc() - Method in class org.neuroml1.model.channel.Block

Gets the value of the conc property.

getConcDependence() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the concDependence property.

getConcDependence() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Gets the value of the concDependence property.

getConcFactor() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the concFactor property.

getConcFactor() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Gets the value of the concFactor property.

getCondLaw() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the condLaw property.

getConductance() - Method in class org.neuroml1.model.channel.DeprecatedOhmic

Gets the value of the conductance property.

getConductance() - Method in class org.neuroml1.model.channel.ElectricalSynapse

Gets the value of the conductance property.

getConnection() - Method in class org.neuroml1.model.network.Connections

Gets the value of the connection property.

getConnections() - Method in class org.neuroml1.model.network.Projection

Gets the value of the connections property.

getConnectivity() - Method in class org.neuroml1.model.Level3Cell

Gets the value of the connectivity property.

getConnectivityPattern() - Method in class org.neuroml1.model.network.Projection

Gets the value of the connectivityPattern property.

getContent() - Method in class org.neuroml1.model.network.Connection

Gets the rest of the content model.

getContent() - Method in class org.neuroml1.model.network.PotentialSynapticLocation

Gets the rest of the content model.

getContent() - Method in class org.neuroml1.model.network.PotentialSynLoc

Gets the rest of the content model.

getContributor() - Method in class org.neuroml1.model.meta.Status

Gets the value of the contributor property.

getCorner() - Method in class org.neuroml1.model.meta.RectangularBox

Gets the value of the corner property.

getCurrentVoltageRelation() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the currentVoltageRelation property.

getDecayConstant() - Method in class org.neuroml1.model.channel.DecayingPoolModel

Gets the value of the decayConstant property.

getDecayConstantAttribute() - Method in class org.neuroml1.model.channel.DecayingPoolModel

Gets the value of the decayConstantAttribute property.

getDecayingPoolModel() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the decayingPoolModel property.

getDecayTime() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Gets the value of the decayTime property.

getDecayTime2() - Method in class org.neuroml1.model.channel.MultiDecaySynapse

Gets the value of the decayTime2 property.

getDecayTime3() - Method in class org.neuroml1.model.channel.MultiDecaySynapse

Gets the value of the decayTime3 property.

getDefaultErev() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the defaultErev property.

getDefaultErev() - Method in class org.neuroml1.model.channel.DeprecatedIon

Gets the value of the defaultErev property.

getDefaultGmax() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the defaultGmax property.

getDefaultGmax() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Gets the value of the defaultGmax property.

getDefaultValues() - Method in class org.neuroml1.model.network.GlobalSynapticProperties

Gets the value of the defaultValues property.

getDefaultValues() - Method in class org.neuroml1.model.network.SynapseProperties

Gets the value of the defaultValues property.

getDelay() - Method in class org.neuroml1.model.network.PulseInput

Gets the value of the delay property.

getDelWeightLtd() - Method in class org.neuroml1.model.channel.StdpDep

Gets the value of the delWeightLtd property.

getDelWeightLtp() - Method in class org.neuroml1.model.channel.StdpDep

Gets the value of the delWeightLtp property.

getDensity() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the density property.

getDepth() - Method in class org.neuroml1.model.meta.RectangularBox.Size

Gets the value of the depth property.

getDescription() - Method in class org.neuroml1.model.meta.GroupDetail

Gets the value of the description property.

getDescription() - Method in class org.neuroml1.model.meta.PropertyDetail

Gets the value of the description property.

getDiameter() - Method in class org.neuroml1.model.meta.Point

Gets the value of the diameter property.

getDirection() - Method in class org.neuroml1.model.network.PerCellConnection

Gets the value of the direction property.

getDistal() - Method in class org.neuroml1.model.morph.InhomogeneousParam

Gets the value of the distal property.

getDistal() - Method in class org.neuroml1.model.morph.Segment

Gets the value of the distal property.

getDistal() - Method in class org.neuroml1.model.morph.Spine

Gets the value of the distal property.

getDoubExpSyn() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the doubExpSyn property.

getDuration() - Method in class org.neuroml1.model.network.PulseInput

Gets the value of the duration property.

getElectricalSyn() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the electricalSyn property.

getEmail() - Method in class org.neuroml1.model.meta.Person

Gets the value of the email property.

getEta() - Method in class org.neuroml1.model.channel.Block

Gets the value of the eta property.

getExperimentalTemp() - Method in class org.neuroml1.model.channel.Q10Settings

Gets the value of the experimentalTemp property.

getExpr() - Method in class org.neuroml1.model.channel.ConcFactor

Gets the value of the expr property.

getExpr() - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

Gets the value of the expr property.

getExpr() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

Gets the value of the expr property.

getExpr() - Method in class org.neuroml1.model.channel.SteadyState

Gets the value of the expr property.

getExpr() - Method in class org.neuroml1.model.channel.TimeCourse

Gets the value of the expr property.

getExpr() - Method in class org.neuroml1.model.channel.Transition

Gets the value of the expr property.

getExprForm() - Method in class org.neuroml1.model.channel.SteadyState

Gets the value of the exprForm property.

getExprForm() - Method in class org.neuroml1.model.channel.TimeCourse

Gets the value of the exprForm property.

getExprForm() - Method in class org.neuroml1.model.channel.Transition

Gets the value of the exprForm property.

getFacDepSyn() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the facDepSyn property.

getFeature() - Method in class org.neuroml1.model.morph.Morphology.Features

Gets the value of the feature property.

getFeatures() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the features property.

getFixedErev() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the fixedErev property.

getFixedPoolInfo() - Method in class org.neuroml1.model.channel.DecayingPoolModel

Gets the value of the fixedPoolInfo property.

getFixedProbability() - Method in class org.neuroml1.model.network.ConnectivityPattern

Gets the value of the fixedProbability property.

getFixedQ10() - Method in class org.neuroml1.model.channel.Q10Settings

Gets the value of the fixedQ10 property.

getFractAlongParent() - Method in class org.neuroml1.model.morph.Cable

Gets the value of the fractAlongParent property.

getFractAlongParentAttribute() - Method in class org.neuroml1.model.morph.Cable

Gets the value of the fractAlongParentAttribute property.

getFraction() - Method in class org.neuroml1.model.channel.Gate.State

Gets the value of the fraction property.

getFraction() - Method in class org.neuroml1.model.channel.OpenState

Gets the value of the fraction property.

getFractionAlong() - Method in class org.neuroml1.model.network.InputSite

Gets the value of the fractionAlong property.

getFractionAlong() - Method in class org.neuroml1.model.network.SynapticLocation

Gets the value of the fractionAlong property.

getFreePoints() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the freePoints property.

getFreePoints() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the freePoints property.

getFrequency() - Method in class org.neuroml1.model.network.RandomStim

Gets the value of the frequency property.

getFrequency() - Method in class org.neuroml1.model.network.RandomStimInstance

Gets the value of the frequency property.

getFrom() - Method in class org.neuroml1.model.channel.SteadyState

Gets the value of the from property.

getFrom() - Method in class org.neuroml1.model.channel.TimeCourse

Gets the value of the from property.

getFrom() - Method in class org.neuroml1.model.channel.Transition

Gets the value of the from property.

getFullTitle() - Method in class org.neuroml1.model.meta.Publication

Gets the value of the fullTitle property.

getGamma() - Method in class org.neuroml1.model.channel.Block

Gets the value of the gamma property.

getGamma() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Gets the value of the gamma property.

getGamma() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Gets the value of the gamma property.

getGate() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the gate property.

getGate() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Gets the value of the gate property.

getGate() - Method in class org.neuroml1.model.channel.Q10Settings

Gets the value of the gate property.

getGeneric() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Gets the value of the generic property.

getGeneric() - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

Gets the value of the generic property.

getGenericEquationHh() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Gets the value of the genericEquationHh property.

getGenericEquationHh() - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

Gets the value of the genericEquationHh property.

getGRefrac() - Method in class org.neuroml1.model.channel.IntegrateAndFire

Gets the value of the gRefrac property.

getGridArrangement() - Method in class org.neuroml1.model.network.PopulationLocation

Gets the value of the gridArrangement property.

getGroup() - Method in class org.neuroml1.model.bio.NamedParameter

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.bio.UnnamedParameter

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.bio.VariableNamedParameter

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.bio.VariableParameter

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.channel.ChannelML

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.channel.DeprecatedIon

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.channel.DeprecatedParameter

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.channel.ElectricalSynapse

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.meta.GroupDetail

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.morph.Cable

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.morph.Cell.Cables

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.morph.Cell.CellBody

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.morph.Cell.Segments

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.morph.Cell.Spines

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.morph.Morphology.Features

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.CellInstance

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.Connections

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.GridArrangement

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.Input

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.Inputs

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.InputSites

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.InputTarget

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.Instances

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.Population

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.PopulationLocation

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.Populations

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.Projection

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.Projections

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.RandomArrangement

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.SynapseInternalProperties

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.network.SynapseProperties

Gets the value of the group property.

getGroup() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the group property.

getGroupDetail() - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

Gets the value of the groupDetail property.

getGroupDetails() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the groupDetails property.

getHeight() - Method in class org.neuroml1.model.meta.RectangularBox.Size

Gets the value of the height property.

getHhGate() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the hhGate property.

getId() - Method in class org.neuroml1.model.channel.ClosedState

Gets the value of the id property.

getId() - Method in class org.neuroml1.model.channel.OpenState

Gets the value of the id property.

getId() - Method in class org.neuroml1.model.morph.Cable

Gets the value of the id property.

getId() - Method in class org.neuroml1.model.morph.CableGroup.Cable

Gets the value of the id property.

getId() - Method in class org.neuroml1.model.morph.Path

Gets the value of the id property.

getId() - Method in class org.neuroml1.model.morph.Segment

Gets the value of the id property.

getId() - Method in class org.neuroml1.model.network.CellInstance

Gets the value of the id property.

getId() - Method in class org.neuroml1.model.network.Connection

Gets the value of the id property.

getImplPrefs() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the implPrefs property.

getInf() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Gets the value of the inf property.

getInf() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Gets the value of the inf property.

getInhomogeneousParam() - Method in class org.neuroml1.model.morph.CableGroup

Gets the value of the inhomogeneousParam property.

getInhomogeneousValue() - Method in class org.neuroml1.model.bio.VariableNamedParameter

Gets the value of the inhomogeneousValue property.

getInhomogeneousValue() - Method in class org.neuroml1.model.bio.VariableParameter

Gets the value of the inhomogeneousValue property.

getInitialisation() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Gets the value of the initialisation property.

getInitialisation() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Gets the value of the initialisation property.

getInitialisation() - Method in class org.neuroml1.model.channel.GatingComplex

Gets the value of the initialisation property.

getInitialMembPotential() - Method in class org.neuroml1.model.bio.Biophysics

Gets the value of the initialMembPotential property.

getInitMembPotential() - Method in class org.neuroml1.model.bio.Biophysics

Gets the value of the initMembPotential property.

getInitReleaseProb() - Method in class org.neuroml1.model.channel.FacDep

Gets the value of the initReleaseProb property.

getInput() - Method in class org.neuroml1.model.network.Inputs

Gets the value of the input property.

getInputs() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the inputs property.

getInputs() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the inputs property.

getInstance() - Method in class org.neuroml1.model.network.Instances

Gets the value of the instance property.

getInstances() - Method in class org.neuroml1.model.channel.GatingComplex

Gets the value of the instances property.

getInstances() - Method in class org.neuroml1.model.network.Population

Gets the value of the instances property.

getInstitution() - Method in class org.neuroml1.model.meta.Person

Gets the value of the institution property.

getIntegrateAndFire() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the integrateAndFire property.

getInternalDelay() - Method in class org.neuroml1.model.network.SynapseInternalProperties

Gets the value of the internalDelay property.

getInvDecayConstant() - Method in class org.neuroml1.model.channel.DecayingPoolModel

Gets the value of the invDecayConstant property.

getInvDecayConstantAttribute() - Method in class org.neuroml1.model.channel.DecayingPoolModel

Gets the value of the invDecayConstantAttribute property.

getIon() - Method in class org.neuroml1.model.channel.ChannelML

Gets the value of the ion property.

getIon() - Method in class org.neuroml1.model.channel.ConcDependence

Gets the value of the ion property.

getIon() - Method in class org.neuroml1.model.channel.ConcFactor

Gets the value of the ion property.

getIon() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the ion property.

getIon() - Method in class org.neuroml1.model.channel.DeprecatedOhmic

Gets the value of the ion property.

getIonConcentration() - Method in class org.neuroml1.model.channel.ChannelML

Gets the value of the ionConcentration property.

getIonProperties() - Method in class org.neuroml1.model.bio.Biophysics

Gets the value of the ionProperties property.

getIonProps() - Method in class org.neuroml1.model.bio.Biophysics

Gets the value of the ionProps property.

getIonSpecies() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the ionSpecies property.

getIssue() - Method in class org.neuroml1.model.meta.Status

Gets the value of the issue property.

getKsGate() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the ksGate property.

getLength() - Method in class org.neuroml1.model.morph.Spine

Gets the value of the length property.

getLengthUnits() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the lengthUnits property.

getLengthUnits() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the lengthUnits property.

getLengthUnits() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the lengthUnits property.

getLengthUnitsAlt() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the lengthUnitsAlt property.

getLengthUnitsAlt() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the lengthUnitsAlt property.

getLengthUnitsAlt() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the lengthUnitsAlt property.

getLocation() - Method in class org.neuroml1.model.network.CellInstance

Gets the value of the location property.

getManifold() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the manifold property.

getMaxConc() - Method in class org.neuroml1.model.channel.ConcDependence

Gets the value of the maxConc property.

getMaxConc() - Method in class org.neuroml1.model.channel.ConcFactor

Gets the value of the maxConc property.

getMaxConductance() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Gets the value of the maxConductance property.

getMaxConductance2() - Method in class org.neuroml1.model.channel.MultiDecaySynapse

Gets the value of the maxConductance2 property.

getMaxConductance3() - Method in class org.neuroml1.model.channel.MultiDecaySynapse

Gets the value of the maxConductance3 property.

getMaxPerTarget() - Method in class org.neuroml1.model.network.PerCellConnection

Gets the value of the maxPerTarget property.

getMaxSynWeight() - Method in class org.neuroml1.model.channel.StdpDep

Gets the value of the maxSynWeight property.

getMaxV() - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

Gets the value of the maxV property.

getMechanism() - Method in class org.neuroml1.model.bio.Biophysics

Gets the value of the mechanism property.

getMetric() - Method in class org.neuroml1.model.morph.InhomogeneousParam

Gets the value of the metric property.

getMidpoint() - Method in class org.neuroml1.model.channel.SteadyState

Gets the value of the midpoint property.

getMidpoint() - Method in class org.neuroml1.model.channel.TimeCourse

Gets the value of the midpoint property.

getMidpoint() - Method in class org.neuroml1.model.channel.Transition

Gets the value of the midpoint property.

getMinConc() - Method in class org.neuroml1.model.channel.ConcDependence

Gets the value of the minConc property.

getMinConc() - Method in class org.neuroml1.model.channel.ConcFactor

Gets the value of the minConc property.

getMinV() - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

Gets the value of the minV property.

getModelAuthor() - Method in class org.neuroml1.model.meta.Authors

Gets the value of the modelAuthor property.

getModelDBref() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the modelDBref property.

getModelDBref() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the modelDBref property.

getModelDBref() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the modelDBref property.

getModelDBref() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the modelDBref property.

getModelDBref() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the modelDBref property.

getModelName() - Method in class org.neuroml1.model.meta.ModelDBReference

Gets the value of the modelName property.

getModelName() - Method in class org.neuroml1.model.meta.NeuronDBReference

Gets the value of the modelName property.

getModelTranslator() - Method in class org.neuroml1.model.meta.Authors

Gets the value of the modelTranslator property.

getMorphMLMapper() - Static method in class org.neuroml1.model.util.NeuroMLNamespacePrefixMapper

getMorphologyRef() - Method in class org.neuroml1.model.meta.NeuroMorphoRef

Gets the value of the morphologyRef property.

getMultiDecaySyn() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the multiDecaySyn property.

getName() - Method in class org.neuroml1.model.bio.IonProperties

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.bio.Mechanism

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.bio.NamedParameter

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.bio.VariableNamedParameter

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.bio.VariableParameter

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.ConcDependence

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.DeprecatedIon

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.DeprecatedKSState

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.DeprecatedParameter

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.Gate.State

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.GatingComplex

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.IonSpecies

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.Parameter

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.SteadyState

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.TimeCourse

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.channel.Transition

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.meta.Person

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.meta.Points

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.meta.RectangularBox

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.meta.Sphere

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.morph.Cable

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.morph.CableGroup

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.morph.InhomogeneousParam

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.morph.Segment

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.network.Input

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.network.Population

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.network.Projection

Gets the value of the name property.

getName() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the name property.

getNetworkMLMapper() - Static method in class org.neuroml1.model.util.NeuroMLNamespacePrefixMapper

getNeuroMLLevel3Mapper() - Static method in class org.neuroml1.model.util.NeuroMLNamespacePrefixMapper

getNeuroMorphoRef() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the neuroMorphoRef property.

getNeuroMorphoRef() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the neuroMorphoRef property.

getNeuroMorphoRef() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the neuroMorphoRef property.

getNeuroMorphoRef() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the neuroMorphoRef property.

getNeuroMorphoRef() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the neuroMorphoRef property.

getNeuronDBref() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the neuronDBref property.

getNeuronDBref() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the neuronDBref property.

getNeuronDBref() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the neuronDBref property.

getNeuronDBref() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the neuronDBref property.

getNeuronDBref() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the neuronDBref property.

getNodeId() - Method in class org.neuroml1.model.network.CellInstance

Gets the value of the nodeId property.

getNonSpatialGrid() - Method in class org.neuroml1.model.network.GridArrangement

Gets the value of the nonSpatialGrid property.

getNormalizationEnd() - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

Gets the value of the normalizationEnd property.

getNotes() - Method in class org.neuroml1.model.channel.ChannelML

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.channel.DeprecatedIon

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.channel.DeprecatedParameter

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.channel.ElectricalSynapse

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.morph.Cable

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.morph.Cell.Cables

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.morph.Cell.CellBody

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.morph.Cell.Segments

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.morph.Cell.Spines

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.morph.Morphology.Features

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.CellInstance

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.Connections

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.GridArrangement

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.Input

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.Inputs

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.InputSites

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.InputTarget

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.Instances

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.Population

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.PopulationLocation

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.Populations

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.Projection

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.Projections

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.RandomArrangement

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.SynapseInternalProperties

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.network.SynapseProperties

Gets the value of the notes property.

getNotes() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the notes property.

getNumPerSource() - Method in class org.neuroml1.model.network.PerCellConnection

Gets the value of the numPerSource property.

getOffset() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the offset property.

getOffset() - Method in class org.neuroml1.model.channel.RateAdjustments

Gets the value of the offset property.

getOhmic() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the ohmic property.

getOpenState() - Method in class org.neuroml1.model.channel.GatingComplex

Gets the value of the openState property.

getParameter() - Method in class org.neuroml1.model.bio.InitialMembPotential

Gets the value of the parameter property.

getParameter() - Method in class org.neuroml1.model.bio.IonProperties

Gets the value of the parameter property.

getParameter() - Method in class org.neuroml1.model.bio.Mechanism

Gets the value of the parameter property.

getParameter() - Method in class org.neuroml1.model.bio.SpecAxialResistance

Gets the value of the parameter property.

getParameter() - Method in class org.neuroml1.model.bio.SpecCapacitance

Gets the value of the parameter property.

getParameter() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

Gets the value of the parameter property.

getParameter() - Method in class org.neuroml1.model.channel.Parameters

Gets the value of the parameter property.

getParameterisedHh() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Gets the value of the parameterisedHh property.

getParameters() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the parameters property.

getParamName() - Method in class org.neuroml1.model.bio.InhomogeneousValue

Gets the value of the paramName property.

getParent() - Method in class org.neuroml1.model.morph.Cable

Gets the value of the parent property.

getParent() - Method in class org.neuroml1.model.morph.Path

Gets the value of the parent property.

getParent() - Method in class org.neuroml1.model.morph.Segment

Gets the value of the parent property.

getParent() - Method in class org.neuroml1.model.morph.Spine

Gets the value of the parent property.

getPath() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the path property.

getPerCellConnection() - Method in class org.neuroml1.model.network.ConnectivityPattern

Gets the value of the perCellConnection property.

getPercentage() - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

Gets the value of the percentage property.

getPercentageCells() - Method in class org.neuroml1.model.network.InputSitePattern

Gets the value of the percentageCells property.

getPhi() - Method in class org.neuroml1.model.channel.FixedPoolInfo

Gets the value of the phi property.

getPlasticity() - Method in class org.neuroml1.model.channel.FacDepSynapse

Gets the value of the plasticity property.

getPoint() - Method in class org.neuroml1.model.meta.Points

Gets the value of the point property.

getPolygon() - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

Gets the value of the polygon property.

getPolygon() - Method in class org.neuroml1.model.morph.Cell.CellBody

Gets the value of the polygon property.

getPolygon() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the polygon property.

getPolygons() - Method in class org.neuroml1.model.meta.Polyhedron

Gets the value of the polygons property.

getPolyhedron() - Method in class org.neuroml1.model.morph.Cell.CellBody

Gets the value of the polyhedron property.

getPolyhedron() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the polyhedron property.

getPoolVolumeInfo() - Method in class org.neuroml1.model.channel.DecayingPoolModel

Gets the value of the poolVolumeInfo property.

getPopLocation() - Method in class org.neuroml1.model.network.Population

Gets the value of the popLocation property.

getPopulation() - Method in class org.neuroml1.model.network.InputTarget

Gets the value of the population property.

getPopulation() - Method in class org.neuroml1.model.network.Populations

Gets the value of the population property.

getPopulationList() - Method in class org.neuroml1.model.NeuroMLLevel3

Get the list of populations in this NeuroML file

getPopulations() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the populations property.

getPopulations() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the populations property.

getPopulationSize() - Method in class org.neuroml1.model.network.RandomArrangement

Gets the value of the populationSize property.

getPostCellId() - Method in class org.neuroml1.model.network.Connection

Gets the value of the postCellId property.

getPostDelay() - Method in class org.neuroml1.model.network.SynapseInternalProperties

Gets the value of the postDelay property.

getPostFractionAlong() - Method in class org.neuroml1.model.network.Connection

Gets the value of the postFractionAlong property.

getPostSegmentId() - Method in class org.neuroml1.model.network.Connection

Gets the value of the postSegmentId property.

getPostSpikeThresh() - Method in class org.neuroml1.model.channel.StdpDep

Gets the value of the postSpikeThresh property.

getPotentialSynapticLocation() - Method in class org.neuroml1.model.Level3Biophysics

Gets the value of the potentialSynapticLocation property.

getPotentialSynLoc() - Method in class org.neuroml1.model.network.Level3Connectivity

Gets the value of the potentialSynLoc property.

getPower() - Method in class org.neuroml1.model.channel.Gate

Gets the value of the power property.

getPreCellId() - Method in class org.neuroml1.model.network.Connection

Gets the value of the preCellId property.

getPreDelay() - Method in class org.neuroml1.model.network.SynapseInternalProperties

Gets the value of the preDelay property.

getPreferredPrefix(String, String, boolean) - Method in class org.neuroml1.model.util.NeuroMLNamespacePrefixMapper

getPreFractionAlong() - Method in class org.neuroml1.model.network.Connection

Gets the value of the preFractionAlong property.

getPreSegmentId() - Method in class org.neuroml1.model.network.Connection

Gets the value of the preSegmentId property.

getProbability() - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

Gets the value of the probability property.

getProjection() - Method in class org.neuroml1.model.network.Projections

Gets the value of the projection property.

getProjectionList() - Method in class org.neuroml1.model.NeuroMLLevel3

Get the list of projections in this NeuroML file

getProjections() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the projections property.

getProjections() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the projections property.

getPropDelay() - Method in class org.neuroml1.model.network.SynapseInternalProperties

Gets the value of the propDelay property.

getProperties() - Method in class org.neuroml1.model.channel.ChannelML

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.channel.DeprecatedIon

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.channel.DeprecatedParameter

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.channel.ElectricalSynapse

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.meta.GroupDetail

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.morph.Cable

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.morph.Cell.Cables

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.morph.Cell.CellBody

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.morph.Cell.Segments

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.morph.Cell.Spines

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.morph.Morphology.Features

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.morph.Segment

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.CellInstance

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.Connections

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.GridArrangement

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.Input

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.Inputs

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.InputSites

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.InputTarget

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.Instances

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.Population

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.PopulationLocation

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.Populations

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.Projection

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.Projections

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.RandomArrangement

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.SynapseInternalProperties

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.network.SynapseProperties

Gets the value of the properties property.

getProperties() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the properties property.

getProperty() - Method in class org.neuroml1.model.meta.Properties

Gets the value of the property property.

getProperty() - Method in class org.neuroml1.model.meta.PropertyDetail

Gets the value of the property property.

getPropertyDetail() - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

Gets the value of the propertyDetail property.

getPropertyDetails() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the propertyDetails property.

getProximal() - Method in class org.neuroml1.model.morph.InhomogeneousParam

Gets the value of the proximal property.

getProximal() - Method in class org.neuroml1.model.morph.Segment

Gets the value of the proximal property.

getProximal() - Method in class org.neuroml1.model.morph.Spine

Gets the value of the proximal property.

getPublication() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the publication property.

getPublication() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the publication property.

getPublication() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the publication property.

getPublication() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the publication property.

getPublication() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the publication property.

getPubmedRef() - Method in class org.neuroml1.model.meta.Publication

Gets the value of the pubmedRef property.

getPulseInput() - Method in class org.neuroml1.model.network.Input

Gets the value of the pulseInput property.

getPulseInputInstance() - Method in class org.neuroml1.model.network.InputSite

Gets the value of the pulseInputInstance property.

getQ10Factor() - Method in class org.neuroml1.model.channel.Q10Settings

Gets the value of the q10Factor property.

getQ10Settings() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Gets the value of the q10Settings property.

getQ10Settings() - Method in class org.neuroml1.model.channel.RateAdjustments

Gets the value of the q10Settings property.

getRandomArrangement() - Method in class org.neuroml1.model.network.PopulationLocation

Gets the value of the randomArrangement property.

getRandomStim() - Method in class org.neuroml1.model.network.Input

Gets the value of the randomStim property.

getRandomStimInstance() - Method in class org.neuroml1.model.network.InputSite

Gets the value of the randomStimInstance property.

getRate() - Method in class org.neuroml1.model.channel.SteadyState

Gets the value of the rate property.

getRate() - Method in class org.neuroml1.model.channel.TimeCourse

Gets the value of the rate property.

getRate() - Method in class org.neuroml1.model.channel.Transition

Gets the value of the rate property.

getRateAdjustments() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Gets the value of the rateAdjustments property.

getRectangularLocation() - Method in class org.neuroml1.model.network.GridArrangement

Gets the value of the rectangularLocation property.

getRectangularLocation() - Method in class org.neuroml1.model.network.RandomArrangement

Gets the value of the rectangularLocation property.

getReference() - Method in class org.neuroml1.model.network.PopulationLocation

Gets the value of the reference property.

getRestingConc() - Method in class org.neuroml1.model.channel.DecayingPoolModel

Gets the value of the restingConc property.

getRestingConcAttribute() - Method in class org.neuroml1.model.channel.DecayingPoolModel

Gets the value of the restingConcAttribute property.

getReversalPotential() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Gets the value of the reversalPotential property.

getRiseTime() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Gets the value of the riseTime property.

getRole() - Method in class org.neuroml1.model.channel.DeprecatedIon

Gets the value of the role property.

getScale() - Method in class org.neuroml1.model.channel.SteadyState

Gets the value of the scale property.

getScale() - Method in class org.neuroml1.model.channel.TimeCourse

Gets the value of the scale property.

getScale() - Method in class org.neuroml1.model.channel.Transition

Gets the value of the scale property.

getSegment() - Method in class org.neuroml1.model.morph.Cell.Segments

Gets the value of the segment property.

getSegmentId() - Method in class org.neuroml1.model.network.InputSite

Gets the value of the segmentId property.

getSegmentId() - Method in class org.neuroml1.model.network.SynapticLocation

Gets the value of the segmentId property.

getSegmentList() - Method in class org.neuroml1.model.morph.Cell

Get the list of segments representing this cell.

getSegments() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the segments property.

getShape() - Method in class org.neuroml1.model.morph.Spine

Gets the value of the shape property.

getShellThickness() - Method in class org.neuroml1.model.channel.PoolVolumeInfo

Gets the value of the shellThickness property.

getShellThicknessAttribute() - Method in class org.neuroml1.model.channel.PoolVolumeInfo

Gets the value of the shellThicknessAttribute property.

getSite() - Method in class org.neuroml1.model.network.InputSites

Gets the value of the site property.

getSitePattern() - Method in class org.neuroml1.model.network.InputTarget

Gets the value of the sitePattern property.

getSites() - Method in class org.neuroml1.model.network.InputTarget

Gets the value of the sites property.

getSize() - Method in class org.neuroml1.model.meta.RectangularBox

Gets the value of the size property.

getSize() - Method in class org.neuroml1.model.network.Connections

Gets the value of the size property.

getSize() - Method in class org.neuroml1.model.network.InputSites

Gets the value of the size property.

getSize() - Method in class org.neuroml1.model.network.Instances

Gets the value of the size property.

getSource() - Method in class org.neuroml1.model.channel.DeprecatedTransition

Gets the value of the source property.

getSource() - Method in class org.neuroml1.model.network.Projection

Gets the value of the source property.

getSourceAttribute() - Method in class org.neuroml1.model.network.Projection

Gets the value of the sourceAttribute property.

getSpacing() - Method in class org.neuroml1.model.network.GridArrangement

Gets the value of the spacing property.

getSpecAxialResistance() - Method in class org.neuroml1.model.bio.Biophysics

Gets the value of the specAxialResistance property.

getSpecCapacitance() - Method in class org.neuroml1.model.bio.Biophysics

Gets the value of the specCapacitance property.

getSpecies() - Method in class org.neuroml1.model.channel.Block

Gets the value of the species property.

getSpecificAxialResistance() - Method in class org.neuroml1.model.bio.Biophysics

Gets the value of the specificAxialResistance property.

getSpecificCapacitance() - Method in class org.neuroml1.model.bio.Biophysics

Gets the value of the specificCapacitance property.

getSphere() - Method in class org.neuroml1.model.morph.Cell.CellBody

Gets the value of the sphere property.

getSphere() - Method in class org.neuroml1.model.morph.Feature

Gets the value of the sphere property.

getSphericalLocation() - Method in class org.neuroml1.model.network.RandomArrangement

Gets the value of the sphericalLocation property.

getSpikeTimeDep() - Method in class org.neuroml1.model.channel.StdpSynapse

Gets the value of the spikeTimeDep property.

getSpine() - Method in class org.neuroml1.model.morph.Cell.Spines

Gets the value of the spine property.

getSpines() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the spines property.

getState() - Method in class org.neuroml1.model.channel.DeprecatedHHGate

Gets the value of the state property.

getState() - Method in class org.neuroml1.model.channel.DeprecatedKSGate

Gets the value of the state property.

getState() - Method in class org.neuroml1.model.channel.Gate

Gets the value of the state property.

getStatus() - Method in class org.neuroml1.model.channel.ChannelType

Gets the value of the status property.

getStatus() - Method in class org.neuroml1.model.channel.IonConcentration

Gets the value of the status property.

getStatus() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the status property.

getStatus() - Method in class org.neuroml1.model.morph.Cell

Gets the value of the status property.

getStdpSyn() - Method in class org.neuroml1.model.channel.SynapseType

Gets the value of the stdpSyn property.

getSteadyState() - Method in class org.neuroml1.model.channel.GatingComplex

Gets the value of the steadyState property.

getSynapseDirection() - Method in class org.neuroml1.model.network.PotentialSynLoc

Gets the value of the synapseDirection property.

getSynapseProps() - Method in class org.neuroml1.model.network.Projection

Gets the value of the synapseProps property.

getSynapseType() - Method in class org.neuroml1.model.channel.ChannelML

Gets the value of the synapseType property.

getSynapseType() - Method in class org.neuroml1.model.network.GlobalSynapticProperties

Gets the value of the synapseType property.

getSynapseType() - Method in class org.neuroml1.model.network.LocalSynapticProperties

Gets the value of the synapseType property.

getSynapseType() - Method in class org.neuroml1.model.network.SynapseProperties

Gets the value of the synapseType property.

getSynapseTypeAttributeGSP() - Method in class org.neuroml1.model.network.GlobalSynapticProperties

Gets the value of the synapseTypeAttributeGSP property.

getSynapseTypeAttributePSL() - Method in class org.neuroml1.model.network.PotentialSynLoc

Gets the value of the synapseTypeAttributePSL property.

getSynapticMechanism() - Method in class org.neuroml1.model.network.RandomStim

Gets the value of the synapticMechanism property.

getTableDivisions() - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

Gets the value of the tableDivisions property.

getTableSettings() - Method in class org.neuroml1.model.channel.ImplementationPrefs

Gets the value of the tableSettings property.

getTag() - Method in class org.neuroml1.model.meta.Property

Gets the value of the tag property.

getTagAttribute() - Method in class org.neuroml1.model.meta.Property

Gets the value of the tagAttribute property.

getTarget() - Method in class org.neuroml1.model.channel.DeprecatedTransition

Gets the value of the target property.

getTarget() - Method in class org.neuroml1.model.network.Input

Gets the value of the target property.

getTarget() - Method in class org.neuroml1.model.network.Projection

Gets the value of the target property.

getTargetAttribute() - Method in class org.neuroml1.model.network.Projection

Gets the value of the targetAttribute property.

getTau() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Gets the value of the tau property.

getTau() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Gets the value of the tau property.

getTauFac() - Method in class org.neuroml1.model.channel.FacDep

Gets the value of the tauFac property.

getTauLtd() - Method in class org.neuroml1.model.channel.StdpDep

Gets the value of the tauLtd property.

getTauLtp() - Method in class org.neuroml1.model.channel.StdpDep

Gets the value of the tauLtp property.

getTauRec() - Method in class org.neuroml1.model.channel.FacDep

Gets the value of the tauRec property.

getThreshold() - Method in class org.neuroml1.model.channel.IntegrateAndFire

Gets the value of the threshold property.

getThreshold() - Method in class org.neuroml1.model.network.SynapseInternalProperties

Gets the value of the threshold property.

getTimeCourse() - Method in class org.neuroml1.model.channel.GatingComplex

Gets the value of the timeCourse property.

getTo() - Method in class org.neuroml1.model.channel.SteadyState

Gets the value of the to property.

getTo() - Method in class org.neuroml1.model.channel.TimeCourse

Gets the value of the to property.

getTo() - Method in class org.neuroml1.model.channel.Transition

Gets the value of the to property.

getTransition() - Method in class org.neuroml1.model.channel.DeprecatedHHGate

Gets the value of the transition property.

getTransition() - Method in class org.neuroml1.model.channel.DeprecatedKSGate

Gets the value of the transition property.

getTransition() - Method in class org.neuroml1.model.channel.GatingComplex

Gets the value of the transition property.

getTranslationStart() - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

Gets the value of the translationStart property.

getTRefrac() - Method in class org.neuroml1.model.channel.IntegrateAndFire

Gets the value of the tRefrac property.

getType() - Method in class org.neuroml1.model.bio.Mechanism

Gets the value of the type property.

getType() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

Gets the value of the type property.

getType() - Method in class org.neuroml1.model.meta.PropertyDetail

Gets the value of the type property.

getUnits() - Method in class org.neuroml1.model.bio.Biophysics

Gets the value of the units property.

getUnits() - Method in class org.neuroml1.model.channel.ChannelML

Gets the value of the units property.

getUnits() - Method in class org.neuroml1.model.network.Inputs

Gets the value of the units property.

getUnits() - Method in class org.neuroml1.model.network.Projections

Gets the value of the units property.

getUri() - Method in class org.neuroml1.model.meta.ModelDBReference

Gets the value of the uri property.

getUri() - Method in class org.neuroml1.model.meta.NeuroMorphoRef

Gets the value of the uri property.

getUri() - Method in class org.neuroml1.model.meta.NeuronDBReference

Gets the value of the uri property.

getValue() - Method in class org.neuroml1.model.bio.InhomogeneousValue

Gets the value of the value property.

getValue() - Method in class org.neuroml1.model.bio.NamedParameter

Gets the value of the value property.

getValue() - Method in class org.neuroml1.model.bio.UnnamedParameter

Gets the value of the value property.

getValue() - Method in class org.neuroml1.model.channel.DeprecatedParameter

Gets the value of the value property.

getValue() - Method in class org.neuroml1.model.channel.Initialisation

Gets the value of the value property.

getValue() - Method in class org.neuroml1.model.channel.IonSpecies

Gets the value of the value property.

getValue() - Method in class org.neuroml1.model.channel.Offset

Gets the value of the value property.

getValue() - Method in class org.neuroml1.model.channel.Parameter

Gets the value of the value property.

getValue() - Method in class org.neuroml1.model.meta.Property

Gets the value of the value property.

getValue() - Method in class org.neuroml1.model.meta.Status

Gets the value of the value property.

getValueAttribute() - Method in class org.neuroml1.model.meta.Property

Gets the value of the valueAttribute property.

getVariable() - Method in class org.neuroml1.model.morph.InhomogeneousParam

Gets the value of the variable property.

getVariableName() - Method in class org.neuroml1.model.channel.ConcDependence

Gets the value of the variableName property.

getVariableName() - Method in class org.neuroml1.model.channel.ConcFactor

Gets the value of the variableName property.

getVariableParameter() - Method in class org.neuroml1.model.bio.InitialMembPotential

Gets the value of the variableParameter property.

getVariableParameter() - Method in class org.neuroml1.model.bio.Mechanism

Gets the value of the variableParameter property.

getVariableParameter() - Method in class org.neuroml1.model.bio.SpecAxialResistance

Gets the value of the variableParameter property.

getVariableParameter() - Method in class org.neuroml1.model.bio.SpecCapacitance

Gets the value of the variableParameter property.

getVariableParameterAlt() - Method in class org.neuroml1.model.bio.Mechanism

Gets the value of the variableParameterAlt property.

getVariableParameterAlt() - Method in class org.neuroml1.model.bio.SpecAxialResistance

Gets the value of the variableParameterAlt property.

getVariableParameterAlt() - Method in class org.neuroml1.model.bio.SpecCapacitance

Gets the value of the variableParameterAlt property.

getVoltageConcGate() - Method in class org.neuroml1.model.channel.DeprecatedTransition

Gets the value of the voltageConcGate property.

getVoltageGate() - Method in class org.neuroml1.model.channel.DeprecatedTransition

Gets the value of the voltageGate property.

getVolume() - Method in class org.neuroml1.model.morph.Spine

Gets the value of the volume property.

getVolumeUnits() - Method in class org.neuroml1.model.morph.Morphology

Gets the value of the volumeUnits property.

getVolumeUnits() - Method in class org.neuroml1.model.network.NetworkML

Gets the value of the volumeUnits property.

getVolumeUnits() - Method in class org.neuroml1.model.NeuroMLLevel3

Gets the value of the volumeUnits property.

getVReset() - Method in class org.neuroml1.model.channel.IntegrateAndFire

Gets the value of the vReset property.

getWeight() - Method in class org.neuroml1.model.network.SynapseInternalProperties

Gets the value of the weight property.

getWidth() - Method in class org.neuroml1.model.meta.RectangularBox.Size

Gets the value of the width property.

getX() - Method in class org.neuroml1.model.meta.NonSpatialGrid

Gets the value of the x property.

getX() - Method in class org.neuroml1.model.meta.Point

Gets the value of the x property.

getX() - Method in class org.neuroml1.model.meta.Point3D

Gets the value of the x property.

getX() - Method in class org.neuroml1.model.network.GridArrangement.Spacing

Gets the value of the x property.

getY() - Method in class org.neuroml1.model.meta.NonSpatialGrid

Gets the value of the y property.

getY() - Method in class org.neuroml1.model.meta.Point

Gets the value of the y property.

getY() - Method in class org.neuroml1.model.meta.Point3D

Gets the value of the y property.

getY() - Method in class org.neuroml1.model.network.GridArrangement.Spacing

Gets the value of the y property.

getZ() - Method in class org.neuroml1.model.meta.NonSpatialGrid

Gets the value of the z property.

getZ() - Method in class org.neuroml1.model.meta.Point

Gets the value of the z property.

getZ() - Method in class org.neuroml1.model.meta.Point3D

Gets the value of the z property.

getZ() - Method in class org.neuroml1.model.network.GridArrangement.Spacing

Gets the value of the z property.

getZeta() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Gets the value of the zeta property.

getZeta() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Gets the value of the zeta property.

GlobalSynapticProperties - Class in org.neuroml1.model.network

Information on synapse type and default values for weight, delay, threshold, etc.

GlobalSynapticProperties() - Constructor for class org.neuroml1.model.network.GlobalSynapticProperties

GlobalSynapticProperties.SynapseTypeElement - Class in org.neuroml1.model.network

gRefrac - Variable in class org.neuroml1.model.channel.IntegrateAndFire

gridArrangement - Variable in class org.neuroml1.model.network.PopulationLocation

GridArrangement - Class in org.neuroml1.model.network

A regular placement of the cells in a number of dimensions

GridArrangement() - Constructor for class org.neuroml1.model.network.GridArrangement

GridArrangement.Spacing - Class in org.neuroml1.model.network

Java class for anonymous complex type.

group - Variable in class org.neuroml1.model.bio.NamedParameter

group - Variable in class org.neuroml1.model.bio.UnnamedParameter

group - Variable in class org.neuroml1.model.bio.VariableNamedParameter

group - Variable in class org.neuroml1.model.bio.VariableParameter

group - Variable in class org.neuroml1.model.channel.ChannelML

group - Variable in class org.neuroml1.model.channel.ChannelType

group - Variable in class org.neuroml1.model.channel.DeprecatedIon

group - Variable in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

group - Variable in class org.neuroml1.model.channel.DeprecatedParameter

group - Variable in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

group - Variable in class org.neuroml1.model.channel.DoubleExponentialSynapse

group - Variable in class org.neuroml1.model.channel.ElectricalSynapse

group - Variable in class org.neuroml1.model.channel.IonConcentration

group - Variable in class org.neuroml1.model.channel.SynapseType

group - Variable in class org.neuroml1.model.meta.GroupDetail

group - Variable in class org.neuroml1.model.morph.Cable

group - Variable in class org.neuroml1.model.morph.Cell.Cables

group - Variable in class org.neuroml1.model.morph.Cell.CellBody

group - Variable in class org.neuroml1.model.morph.Cell

group - Variable in class org.neuroml1.model.morph.Cell.Segments

group - Variable in class org.neuroml1.model.morph.Cell.Spines

group - Variable in class org.neuroml1.model.morph.Feature

group - Variable in class org.neuroml1.model.morph.Morphology.Features

group - Variable in class org.neuroml1.model.morph.Morphology

group - Variable in class org.neuroml1.model.network.CellInstance

group - Variable in class org.neuroml1.model.network.Connections

group - Variable in class org.neuroml1.model.network.GridArrangement

group - Variable in class org.neuroml1.model.network.Input

group - Variable in class org.neuroml1.model.network.Inputs

group - Variable in class org.neuroml1.model.network.InputSites

group - Variable in class org.neuroml1.model.network.InputTarget

group - Variable in class org.neuroml1.model.network.Instances

group - Variable in class org.neuroml1.model.network.NetworkML

group - Variable in class org.neuroml1.model.network.Population

group - Variable in class org.neuroml1.model.network.PopulationLocation

group - Variable in class org.neuroml1.model.network.Populations

group - Variable in class org.neuroml1.model.network.Projection

group - Variable in class org.neuroml1.model.network.Projections

group - Variable in class org.neuroml1.model.network.RandomArrangement

group - Variable in class org.neuroml1.model.network.SynapseInternalProperties

group - Variable in class org.neuroml1.model.network.SynapseProperties

group - Variable in class org.neuroml1.model.NeuroMLLevel3

groupDetail - Variable in class org.neuroml1.model.morph.Morphology.GroupDetails

GroupDetail - Class in org.neuroml1.model.meta

Metadata for each Group.

GroupDetail() - Constructor for class org.neuroml1.model.meta.GroupDetail

groupDetails - Variable in class org.neuroml1.model.morph.Morphology

GroupDetails() - Constructor for class org.neuroml1.model.morph.Morphology.GroupDetails

GroupElementPSL1() - Constructor for class org.neuroml1.model.network.PotentialSynLoc.GroupElementPSL1

GroupElementPSL1(String) - Constructor for class org.neuroml1.model.network.PotentialSynLoc.GroupElementPSL1

GroupElementPSL2() - Constructor for class org.neuroml1.model.network.PotentialSynapticLocation.GroupElementPSL2

GroupElementPSL2(String) - Constructor for class org.neuroml1.model.network.PotentialSynapticLocation.GroupElementPSL2

H

hashCode() - Method in class org.neuroml1.model.bio.Biophysics

hashCode() - Method in class org.neuroml1.model.bio.InhomogeneousValue

hashCode() - Method in class org.neuroml1.model.bio.InitialMembPotential

hashCode() - Method in class org.neuroml1.model.bio.IonProperties

hashCode() - Method in class org.neuroml1.model.bio.Mechanism

hashCode() - Method in class org.neuroml1.model.bio.NamedParameter

hashCode() - Method in class org.neuroml1.model.bio.SpecAxialResistance

hashCode() - Method in class org.neuroml1.model.bio.SpecCapacitance

hashCode() - Method in class org.neuroml1.model.bio.UnnamedParameter

hashCode() - Method in class org.neuroml1.model.bio.VariableNamedParameter

hashCode() - Method in class org.neuroml1.model.bio.VariableParameter

hashCode() - Method in class org.neuroml1.model.channel.Block

hashCode() - Method in class org.neuroml1.model.channel.BlockingSynapse

hashCode() - Method in class org.neuroml1.model.channel.ChannelML

hashCode() - Method in class org.neuroml1.model.channel.ChannelType

hashCode() - Method in class org.neuroml1.model.channel.ClosedState

hashCode() - Method in class org.neuroml1.model.channel.ConcDependence

hashCode() - Method in class org.neuroml1.model.channel.ConcFactor

hashCode() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

hashCode() - Method in class org.neuroml1.model.channel.DecayingPoolModel

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedHHGate

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedIon

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedKSGate

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedKSState

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedOhmic

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedParameter

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedTransition

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

hashCode() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

hashCode() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

hashCode() - Method in class org.neuroml1.model.channel.ElectricalSynapse

hashCode() - Method in class org.neuroml1.model.channel.FacDep

hashCode() - Method in class org.neuroml1.model.channel.FacDepSynapse

hashCode() - Method in class org.neuroml1.model.channel.FixedPoolInfo

hashCode() - Method in class org.neuroml1.model.channel.Gate

hashCode() - Method in class org.neuroml1.model.channel.Gate.State

hashCode() - Method in class org.neuroml1.model.channel.GatingComplex

hashCode() - Method in class org.neuroml1.model.channel.ImplementationPrefs

hashCode() - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

hashCode() - Method in class org.neuroml1.model.channel.Initialisation

hashCode() - Method in class org.neuroml1.model.channel.IntegrateAndFire

hashCode() - Method in class org.neuroml1.model.channel.IonConcentration

hashCode() - Method in class org.neuroml1.model.channel.IonSpecies

hashCode() - Method in class org.neuroml1.model.channel.MultiDecaySynapse

hashCode() - Method in class org.neuroml1.model.channel.Offset

hashCode() - Method in class org.neuroml1.model.channel.OpenState

hashCode() - Method in class org.neuroml1.model.channel.Parameter

hashCode() - Method in class org.neuroml1.model.channel.Parameters

hashCode() - Method in class org.neuroml1.model.channel.PoolVolumeInfo

hashCode() - Method in class org.neuroml1.model.channel.Q10Settings

hashCode() - Method in class org.neuroml1.model.channel.RateAdjustments

hashCode() - Method in class org.neuroml1.model.channel.StdpDep

hashCode() - Method in class org.neuroml1.model.channel.StdpSynapse

hashCode() - Method in class org.neuroml1.model.channel.SteadyState

hashCode() - Method in class org.neuroml1.model.channel.SynapseType

hashCode() - Method in class org.neuroml1.model.channel.TimeCourse

hashCode() - Method in class org.neuroml1.model.channel.Transition

hashCode() - Method in class org.neuroml1.model.Level3Biophysics

hashCode() - Method in class org.neuroml1.model.Level3Cell

hashCode() - Method in class org.neuroml1.model.Level3Cells

hashCode() - Method in class org.neuroml1.model.meta.Annotation

hashCode() - Method in class org.neuroml1.model.meta.Authors

hashCode() - Method in class org.neuroml1.model.meta.GroupDetail

hashCode() - Method in class org.neuroml1.model.meta.Manifold

hashCode() - Method in class org.neuroml1.model.meta.ModelDBReference

hashCode() - Method in class org.neuroml1.model.meta.NeuroMorphoRef

hashCode() - Method in class org.neuroml1.model.meta.NeuronDBReference

hashCode() - Method in class org.neuroml1.model.meta.NonSpatialGrid

hashCode() - Method in class org.neuroml1.model.meta.Person

hashCode() - Method in class org.neuroml1.model.meta.Point

hashCode() - Method in class org.neuroml1.model.meta.Point3D

hashCode() - Method in class org.neuroml1.model.meta.Points

hashCode() - Method in class org.neuroml1.model.meta.Polygon

hashCode() - Method in class org.neuroml1.model.meta.Polyhedron

hashCode() - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

hashCode() - Method in class org.neuroml1.model.meta.Properties

hashCode() - Method in class org.neuroml1.model.meta.Property

hashCode() - Method in class org.neuroml1.model.meta.PropertyDetail

hashCode() - Method in class org.neuroml1.model.meta.Publication

hashCode() - Method in class org.neuroml1.model.meta.RectangularBox

hashCode() - Method in class org.neuroml1.model.meta.RectangularBox.Size

hashCode() - Method in class org.neuroml1.model.meta.Sphere

hashCode() - Method in class org.neuroml1.model.meta.Status

hashCode() - Method in class org.neuroml1.model.morph.Cable

hashCode() - Method in class org.neuroml1.model.morph.CableGroup.Cable

hashCode() - Method in class org.neuroml1.model.morph.CableGroup

hashCode() - Method in class org.neuroml1.model.morph.Cell.Cables

hashCode() - Method in class org.neuroml1.model.morph.Cell.CellBody

hashCode() - Method in class org.neuroml1.model.morph.Cell

hashCode() - Method in class org.neuroml1.model.morph.Cell.Segments

hashCode() - Method in class org.neuroml1.model.morph.Cell.Spines

hashCode() - Method in class org.neuroml1.model.morph.Cells

hashCode() - Method in class org.neuroml1.model.morph.Feature

hashCode() - Method in class org.neuroml1.model.morph.FreePoints

hashCode() - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

hashCode() - Method in class org.neuroml1.model.morph.InhomogeneousParam

hashCode() - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

hashCode() - Method in class org.neuroml1.model.morph.Morphology.Features

hashCode() - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

hashCode() - Method in class org.neuroml1.model.morph.Morphology

hashCode() - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

hashCode() - Method in class org.neuroml1.model.morph.Path

hashCode() - Method in class org.neuroml1.model.morph.Segment

hashCode() - Method in class org.neuroml1.model.morph.Spine

hashCode() - Method in class org.neuroml1.model.network.CellInstance

hashCode() - Method in class org.neuroml1.model.network.Connection

hashCode() - Method in class org.neuroml1.model.network.Connections

hashCode() - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

hashCode() - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

hashCode() - Method in class org.neuroml1.model.network.ConnectivityPattern

hashCode() - Method in class org.neuroml1.model.network.GlobalSynapticProperties

hashCode() - Method in class org.neuroml1.model.network.GridArrangement

hashCode() - Method in class org.neuroml1.model.network.GridArrangement.Spacing

hashCode() - Method in class org.neuroml1.model.network.Input

hashCode() - Method in class org.neuroml1.model.network.Inputs

hashCode() - Method in class org.neuroml1.model.network.InputSite

hashCode() - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

hashCode() - Method in class org.neuroml1.model.network.InputSitePattern

hashCode() - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

hashCode() - Method in class org.neuroml1.model.network.InputSites

hashCode() - Method in class org.neuroml1.model.network.InputTarget

hashCode() - Method in class org.neuroml1.model.network.Instances

hashCode() - Method in class org.neuroml1.model.network.Level3Connectivity

hashCode() - Method in class org.neuroml1.model.network.LocalSynapticProperties

hashCode() - Method in class org.neuroml1.model.network.NetworkML

hashCode() - Method in class org.neuroml1.model.network.PerCellConnection

hashCode() - Method in class org.neuroml1.model.network.Population

hashCode() - Method in class org.neuroml1.model.network.PopulationLocation

hashCode() - Method in class org.neuroml1.model.network.Populations

hashCode() - Method in class org.neuroml1.model.network.PotentialSynapticLocation

hashCode() - Method in class org.neuroml1.model.network.PotentialSynLoc

hashCode() - Method in class org.neuroml1.model.network.Projection

hashCode() - Method in class org.neuroml1.model.network.Projections

hashCode() - Method in class org.neuroml1.model.network.PulseInput

hashCode() - Method in class org.neuroml1.model.network.RandomArrangement

hashCode() - Method in class org.neuroml1.model.network.RandomStim

hashCode() - Method in class org.neuroml1.model.network.RandomStimInstance

hashCode() - Method in class org.neuroml1.model.network.SynapseInternalProperties

hashCode() - Method in class org.neuroml1.model.network.SynapseProperties

hashCode() - Method in class org.neuroml1.model.network.SynapticLocation

hashCode() - Method in class org.neuroml1.model.NeuroMLLevel3

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.Biophysics

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.InhomogeneousValue

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.InitialMembPotential

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.IonProperties

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.Mechanism

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.NamedParameter

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.SpecAxialResistance

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.SpecCapacitance

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.UnnamedParameter

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.VariableNamedParameter

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.bio.VariableParameter

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.Block

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.BlockingSynapse

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.ChannelML

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.ChannelType

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.ClosedState

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.ConcDependence

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.ConcFactor

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DecayingPoolModel

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedHHGate

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedIon

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedKSGate

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedKSState

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedOhmic

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedParameter

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedTransition

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.ElectricalSynapse

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.FacDep

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.FacDepSynapse

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.FixedPoolInfo

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.Gate

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.Gate.State

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.GatingComplex

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.ImplementationPrefs

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.Initialisation

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.IntegrateAndFire

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.IonConcentration

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.IonSpecies

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.Offset

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.OpenState

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.Parameter

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.Parameters

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.PoolVolumeInfo

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.Q10Settings

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.RateAdjustments

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.StdpDep

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.StdpSynapse

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.SteadyState

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.SynapseType

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.TimeCourse

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.channel.Transition

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.Level3Biophysics

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.Level3Cell

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.Level3Cells

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Annotation

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Authors

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.GroupDetail

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Manifold

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.ModelDBReference

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.NeuroMorphoRef

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.NeuronDBReference

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.NonSpatialGrid

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Person

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Point

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Point3D

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Points

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Polygon

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Polyhedron

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Properties

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Property

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.PropertyDetail

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Publication

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.RectangularBox

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.RectangularBox.Size

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Sphere

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.meta.Status

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Cable

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.CableGroup.Cable

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.CableGroup

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Cell.Cables

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Cell.CellBody

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Cell

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Cell.Segments

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Cell.Spines

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Cells

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Feature

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.FreePoints

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Morphology.Features

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Morphology

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Path

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Segment

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.morph.Spine

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.CellInstance

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.Connection

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.Connections

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.ConnectivityPattern

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.GlobalSynapticProperties

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.GridArrangement

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.GridArrangement.Spacing

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.Input

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.Inputs

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.InputSite

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.InputSites

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.InputTarget

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.Instances

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.Level3Connectivity

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.LocalSynapticProperties

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.NetworkML

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.PerCellConnection

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.Population

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.PopulationLocation

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.Populations

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.PotentialSynapticLocation

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.PotentialSynLoc

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.Projection

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.Projections

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.PulseInput

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.RandomArrangement

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.RandomStim

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.RandomStimInstance

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.SynapseInternalProperties

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.SynapseProperties

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.network.SynapticLocation

hashCode(ObjectLocator, HashCodeStrategy2) - Method in class org.neuroml1.model.NeuroMLLevel3

height - Variable in class org.neuroml1.model.meta.RectangularBox.Size

hhGate - Variable in class org.neuroml1.model.channel.ChannelType

I

id - Variable in class org.neuroml1.model.channel.ClosedState

id - Variable in class org.neuroml1.model.channel.OpenState

id - Variable in class org.neuroml1.model.morph.Cable

id - Variable in class org.neuroml1.model.morph.CableGroup.Cable

id - Variable in class org.neuroml1.model.morph.Path

id - Variable in class org.neuroml1.model.morph.Segment

id - Variable in class org.neuroml1.model.network.CellInstance

id - Variable in class org.neuroml1.model.network.Connection

ImplementationPrefs - Class in org.neuroml1.model.channel

These items ideally shouldn't be in a specification which deals with a description of the physiology of the channel.

ImplementationPrefs() - Constructor for class org.neuroml1.model.channel.ImplementationPrefs

ImplementationPrefs.TableSettings - Class in org.neuroml1.model.channel

Java class for anonymous complex type.

implPrefs - Variable in class org.neuroml1.model.channel.ChannelType

IN_PROGRESS - Enum constant in enum org.neuroml1.model.meta.StatusValue

File can be used with caution, bearing in mind any comments present

inf - Variable in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

inf - Variable in class org.neuroml1.model.channel.DeprecatedVoltageGate

inhomogeneousParam - Variable in class org.neuroml1.model.morph.CableGroup

InhomogeneousParam - Class in org.neuroml1.model.morph

Definition of a parameter which varies along a cable group.

InhomogeneousParam() - Constructor for class org.neuroml1.model.morph.InhomogeneousParam

InhomogeneousParam.Distal - Class in org.neuroml1.model.morph

Java class for anonymous complex type.

InhomogeneousParam.Proximal - Class in org.neuroml1.model.morph

Java class for anonymous complex type.

inhomogeneousValue - Variable in class org.neuroml1.model.bio.VariableNamedParameter

inhomogeneousValue - Variable in class org.neuroml1.model.bio.VariableParameter

InhomogeneousValue - Class in org.neuroml1.model.bio

How a value changes over the cable group.

InhomogeneousValue() - Constructor for class org.neuroml1.model.bio.InhomogeneousValue

initialisation - Variable in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

initialisation - Variable in class org.neuroml1.model.channel.DeprecatedVoltageGate

initialisation - Variable in class org.neuroml1.model.channel.GatingComplex

Initialisation - Class in org.neuroml1.model.channel

Element added for *testing purposes only*.

Initialisation() - Constructor for class org.neuroml1.model.channel.Initialisation

initialMembPotential - Variable in class org.neuroml1.model.bio.Biophysics

InitialMembPotential - Class in org.neuroml1.model.bio

This quantity is often required for computational simulations and specifies the potential difference across the membrane at the start of the simulation.

InitialMembPotential() - Constructor for class org.neuroml1.model.bio.InitialMembPotential

initMembPotential - Variable in class org.neuroml1.model.bio.Biophysics

initReleaseProb - Variable in class org.neuroml1.model.channel.FacDep

input - Variable in class org.neuroml1.model.network.Inputs

Input - Class in org.neuroml1.model.network

Description of a single electrical input to a number of cells

Input() - Constructor for class org.neuroml1.model.network.Input

inputs - Variable in class org.neuroml1.model.network.NetworkML

inputs - Variable in class org.neuroml1.model.NeuroMLLevel3

Inputs - Class in org.neuroml1.model.network

The list of electrical inputs into the cells.

Inputs() - Constructor for class org.neuroml1.model.network.Inputs

InputSite - Class in org.neuroml1.model.network

Specifies a location on a cell where input is received

InputSite() - Constructor for class org.neuroml1.model.network.InputSite

InputSitePattern - Class in org.neuroml1.model.network

Information on the number of cells on which to apply inputs.

InputSitePattern() - Constructor for class org.neuroml1.model.network.InputSitePattern

InputSitePattern.AllCells - Class in org.neuroml1.model.network

Java class for anonymous complex type.

InputSitePattern.PercentageCells - Class in org.neuroml1.model.network

Java class for anonymous complex type.

InputSites - Class in org.neuroml1.model.network

The list of input sites

InputSites() - Constructor for class org.neuroml1.model.network.InputSites

InputTarget - Class in org.neuroml1.model.network

Specifies the cell group and which cells/segments to apply the stimulation

InputTarget() - Constructor for class org.neuroml1.model.network.InputTarget

instance - Variable in class org.neuroml1.model.network.Instances

instances - Variable in class org.neuroml1.model.channel.GatingComplex

instances - Variable in class org.neuroml1.model.network.Population

Instances - Class in org.neuroml1.model.network

Cell Instance position information

Instances() - Constructor for class org.neuroml1.model.network.Instances

institution - Variable in class org.neuroml1.model.meta.Person

INTEGRATE_AND_FIRE - Enum constant in enum org.neuroml1.model.channel.ConductanceLaw

Signifies a current which will cause the cell to behave like an integrate and fire neuron.

integrateAndFire - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

IntegrateAndFire - Class in org.neuroml1.model.channel

Signifies a current which will cause the cell to behave like an integrate and fire neuron.

IntegrateAndFire() - Constructor for class org.neuroml1.model.channel.IntegrateAndFire

internalDelay - Variable in class org.neuroml1.model.network.SynapseInternalProperties

InternalProperties() - Constructor for class org.neuroml1.model.network.Connection.InternalProperties

InternalProperties(LocalSynapticProperties) - Constructor for class org.neuroml1.model.network.Connection.InternalProperties

invDecayConstant - Variable in class org.neuroml1.model.channel.DecayingPoolModel

invDecayConstantAttribute - Variable in class org.neuroml1.model.channel.DecayingPoolModel

ion - Variable in class org.neuroml1.model.channel.ChannelML

ion - Variable in class org.neuroml1.model.channel.ConcDependence

ion - Variable in class org.neuroml1.model.channel.ConcFactor

ion - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

ion - Variable in class org.neuroml1.model.channel.DeprecatedOhmic

ION_CONCENTRATION - Enum constant in enum org.neuroml1.model.bio.MechanismType

Mechanism which alters the oncentration of a specific ion

ionConcentration - Variable in class org.neuroml1.model.channel.ChannelML

IonConcentration - Class in org.neuroml1.model.channel

Specification of how an ion concentration alters with time, e.g.

IonConcentration() - Constructor for class org.neuroml1.model.channel.IonConcentration

ionProperties - Variable in class org.neuroml1.model.bio.Biophysics

IonProperties - Class in org.neuroml1.model.bio

Some properties accociated with an ion type which takes part in the mechanisms on the cell

IonProperties() - Constructor for class org.neuroml1.model.bio.IonProperties

ionProps - Variable in class org.neuroml1.model.bio.Biophysics

ionSpecies - Variable in class org.neuroml1.model.channel.IonConcentration

IonSpecies - Class in org.neuroml1.model.channel

Which ion is involved in an ion_concentration mechanism.

IonSpecies() - Constructor for class org.neuroml1.model.channel.IonSpecies

isPassiveConductance() - Method in class org.neuroml1.model.bio.Mechanism

Gets the value of the passiveConductance property.

isPassiveConductanceOld() - Method in class org.neuroml1.model.bio.Mechanism

Gets the value of the passiveConductanceOld property.

issue - Variable in class org.neuroml1.model.meta.Status

J

jaxb - Variable in class org.neuroml1.model.util.NeuroMLConverter

K

KNOWN_ISSUES - Enum constant in enum org.neuroml1.model.meta.StatusValue

File can be assumed to be erroneous and shouldn't be used

ksGate - Variable in class org.neuroml1.model.channel.ChannelType

L

length - Variable in class org.neuroml1.model.morph.Spine

lengthUnits - Variable in class org.neuroml1.model.morph.Morphology

lengthUnits - Variable in class org.neuroml1.model.network.NetworkML

lengthUnits - Variable in class org.neuroml1.model.NeuroMLLevel3

LengthUnits - Enum in org.neuroml1.model.meta

Java class for LengthUnits.

lengthUnitsAlt - Variable in class org.neuroml1.model.morph.Morphology

lengthUnitsAlt - Variable in class org.neuroml1.model.network.NetworkML

lengthUnitsAlt - Variable in class org.neuroml1.model.NeuroMLLevel3

Level3Biophysics - Class in org.neuroml1.model

Biophysics of Level3 cell, including specification for allowable synaptic locations.

Level3Biophysics() - Constructor for class org.neuroml1.model.Level3Biophysics

Level3Cell - Class in org.neuroml1.model

Cell with extensions for biophysics, and network functionality

Level3Cell() - Constructor for class org.neuroml1.model.Level3Cell

Level3Cells - Class in org.neuroml1.model

Set of Level 3 cells

Level3Cells() - Constructor for class org.neuroml1.model.Level3Cells

Level3Connectivity - Class in org.neuroml1.model.network

Biophysics of Level3 cell, including specification for allowable synaptic locations.

Level3Connectivity() - Constructor for class org.neuroml1.model.network.Level3Connectivity

LINOID - Enum constant in enum org.neuroml1.model.channel.DeprecatedCoreEquationType

Of the form: A * (k * (v-d)) / (1 - exp(-(k * (v-d))))

LITRE - Enum constant in enum org.neuroml1.model.meta.VolumeUnits

LocalSynapticProperties - Class in org.neuroml1.model.network

Variables specifying a single synapse

LocalSynapticProperties() - Constructor for class org.neuroml1.model.network.LocalSynapticProperties

location - Variable in class org.neuroml1.model.network.CellInstance

M

main(String[]) - Static method in class org.neuroml1.model.util.NeuroML1Validator

manifold - Variable in class org.neuroml1.model.morph.Feature

Manifold - Class in org.neuroml1.model.meta

A surface.

Manifold() - Constructor for class org.neuroml1.model.meta.Manifold

marshallerChannelML - Variable in class org.neuroml1.model.util.NeuroMLConverter

marshallerMorphML - Variable in class org.neuroml1.model.util.NeuroMLConverter

marshallerNetworkML - Variable in class org.neuroml1.model.util.NeuroMLConverter

marshallerNeuroML - Variable in class org.neuroml1.model.util.NeuroMLConverter

maxConc - Variable in class org.neuroml1.model.channel.ConcDependence

maxConc - Variable in class org.neuroml1.model.channel.ConcFactor

maxConductance - Variable in class org.neuroml1.model.channel.DoubleExponentialSynapse

maxConductance2 - Variable in class org.neuroml1.model.channel.MultiDecaySynapse

maxConductance3 - Variable in class org.neuroml1.model.channel.MultiDecaySynapse

maxPerTarget - Variable in class org.neuroml1.model.network.PerCellConnection

maxSynWeight - Variable in class org.neuroml1.model.channel.StdpDep

maxV - Variable in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

mechanism - Variable in class org.neuroml1.model.bio.Biophysics

Mechanism - Class in org.neuroml1.model.bio

Definition of placement of a single electrophysiological mechanism (e.g.

Mechanism() - Constructor for class org.neuroml1.model.bio.Mechanism

MechanismType - Enum in org.neuroml1.model.bio

Java class for MechanismType.

METER - Enum constant in enum org.neuroml1.model.meta.LengthUnits

metric - Variable in class org.neuroml1.model.morph.InhomogeneousParam

MICROMETER - Enum constant in enum org.neuroml1.model.meta.LengthUnits

Note: micrometer is preferred to micron from v1.8.1

MICRON - Enum constant in enum org.neuroml1.model.meta.LengthUnits

Note: micrometer is preferred to micron from v1.8.1

midpoint - Variable in class org.neuroml1.model.channel.SteadyState

midpoint - Variable in class org.neuroml1.model.channel.TimeCourse

midpoint - Variable in class org.neuroml1.model.channel.Transition

MILLILITRE - Enum constant in enum org.neuroml1.model.meta.VolumeUnits

MILLIMETER - Enum constant in enum org.neuroml1.model.meta.LengthUnits

minConc - Variable in class org.neuroml1.model.channel.ConcDependence

minConc - Variable in class org.neuroml1.model.channel.ConcFactor

minV - Variable in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

modelAuthor - Variable in class org.neuroml1.model.meta.Authors

modelDBref - Variable in class org.neuroml1.model.channel.ChannelType

modelDBref - Variable in class org.neuroml1.model.channel.IonConcentration

modelDBref - Variable in class org.neuroml1.model.channel.SynapseType

modelDBref - Variable in class org.neuroml1.model.morph.Cell

modelDBref - Variable in class org.neuroml1.model.NeuroMLLevel3

ModelDBReference - Class in org.neuroml1.model.meta

A reference to an entity in ModelDB Note: This element will possibly change when a new set of schema files is adopted for adding references, authors, citations, etc.

ModelDBReference() - Constructor for class org.neuroml1.model.meta.ModelDBReference

modelName - Variable in class org.neuroml1.model.meta.ModelDBReference

modelName - Variable in class org.neuroml1.model.meta.NeuronDBReference

modelTranslator - Variable in class org.neuroml1.model.meta.Authors

MODULATING_SUBSTANCE - Enum constant in enum org.neuroml1.model.channel.DeprecatedIonRole

Concentration of ion/substance modulates dynamics/rate equations of channel, e.g.

MORPHML_NAMESPACE_URI - Static variable in class org.neuroml1.model.util.NeuroMLConverter

MORPHML_SCHEMA_LOCATION - Static variable in class org.neuroml1.model.util.NeuroMLConverter

Morphology - Class in org.neuroml1.model.morph

The main element which details the neuronal morphology.

Morphology() - Constructor for class org.neuroml1.model.morph.Morphology

Morphology.Features - Class in org.neuroml1.model.morph

Java class for anonymous complex type.

Morphology.GroupDetails - Class in org.neuroml1.model.morph

Java class for anonymous complex type.

Morphology.PropertyDetails - Class in org.neuroml1.model.morph

Java class for anonymous complex type.

morphologyRef - Variable in class org.neuroml1.model.meta.NeuroMorphoRef

morphologyToXml(Morphology, String) - Method in class org.neuroml1.model.util.NeuroMLConverter

multiDecaySyn - Variable in class org.neuroml1.model.channel.SynapseType

MultiDecaySynapse - Class in org.neuroml1.model.channel

A more complex synaptic mechanism featuring up to 4 exponential components (1 rise and 3 decay).

MultiDecaySynapse() - Constructor for class org.neuroml1.model.channel.MultiDecaySynapse

MUSHROOM - Enum constant in enum org.neuroml1.model.morph.SpineShape

N

name - Variable in class org.neuroml1.model.bio.IonProperties

name - Variable in class org.neuroml1.model.bio.Mechanism

name - Variable in class org.neuroml1.model.bio.NamedParameter

name - Variable in class org.neuroml1.model.bio.VariableNamedParameter

name - Variable in class org.neuroml1.model.bio.VariableParameter

name - Variable in class org.neuroml1.model.channel.ChannelType

name - Variable in class org.neuroml1.model.channel.ConcDependence

name - Variable in class org.neuroml1.model.channel.DeprecatedIon

name - Variable in class org.neuroml1.model.channel.DeprecatedKSState

name - Variable in class org.neuroml1.model.channel.DeprecatedParameter

name - Variable in class org.neuroml1.model.channel.Gate.State

name - Variable in class org.neuroml1.model.channel.GatingComplex

name - Variable in class org.neuroml1.model.channel.IonConcentration

name - Variable in class org.neuroml1.model.channel.IonSpecies

name - Variable in class org.neuroml1.model.channel.Parameter

name - Variable in class org.neuroml1.model.channel.SteadyState

name - Variable in class org.neuroml1.model.channel.SynapseType

name - Variable in class org.neuroml1.model.channel.TimeCourse

name - Variable in class org.neuroml1.model.channel.Transition

name - Variable in class org.neuroml1.model.meta.Person

name - Variable in class org.neuroml1.model.meta.Points

name - Variable in class org.neuroml1.model.meta.RectangularBox

name - Variable in class org.neuroml1.model.meta.Sphere

name - Variable in class org.neuroml1.model.morph.Cable

name - Variable in class org.neuroml1.model.morph.CableGroup

name - Variable in class org.neuroml1.model.morph.Cell

name - Variable in class org.neuroml1.model.morph.Feature

name - Variable in class org.neuroml1.model.morph.InhomogeneousParam

name - Variable in class org.neuroml1.model.morph.Morphology

name - Variable in class org.neuroml1.model.morph.Segment

name - Variable in class org.neuroml1.model.network.Input

name - Variable in class org.neuroml1.model.network.NetworkML

name - Variable in class org.neuroml1.model.network.Population

name - Variable in class org.neuroml1.model.network.Projection

name - Variable in class org.neuroml1.model.NeuroMLLevel3

NAME - Static variable in class org.neuroml1.model.network.Connection.InternalProperties

NAME - Static variable in class org.neuroml1.model.network.GlobalSynapticProperties.SynapseTypeElement

NAME - Static variable in class org.neuroml1.model.network.Population.CellTypeElement

NAME - Static variable in class org.neuroml1.model.network.PotentialSynapticLocation.GroupElementPSL2

NAME - Static variable in class org.neuroml1.model.network.PotentialSynLoc.GroupElementPSL1

NAME - Static variable in class org.neuroml1.model.network.Projection.SourceElement

NAME - Static variable in class org.neuroml1.model.network.Projection.TargetElement

NamedParameter - Class in org.neuroml1.model.bio

Definition of a value for a quantity and the associated groups of cables which have this value.

NamedParameter() - Constructor for class org.neuroml1.model.bio.NamedParameter

namespaceToPrefixMap - Variable in class org.neuroml1.model.util.NeuroMLNamespacePrefixMapper

NetworkML - Class in org.neuroml1.model.network

The main elements which make up a NetworkML compliant document.

NetworkML() - Constructor for class org.neuroml1.model.network.NetworkML

NETWORKML_NAMESPACE_URI - Static variable in class org.neuroml1.model.util.NeuroMLConverter

NETWORKML_SCHEMA_LOCATION - Static variable in class org.neuroml1.model.util.NeuroMLConverter

networkToXml(NetworkML, String) - Method in class org.neuroml1.model.util.NeuroMLConverter

NEUROML_NAMESPACE_URI - Static variable in class org.neuroml1.model.util.NeuroMLConverter

NEUROML_SCHEMA_LOCATION - Static variable in class org.neuroml1.model.util.NeuroMLConverter

NeuroML1Validator - Class in org.neuroml1.model.util

NeuroML1Validator() - Constructor for class org.neuroml1.model.util.NeuroML1Validator

NeuroMLConverter - Class in org.neuroml1.model.util

NeuroMLConverter() - Constructor for class org.neuroml1.model.util.NeuroMLConverter

NeuroMLLevel3 - Class in org.neuroml1.model

Description of neuronal models, including biophysics and channel mechanisms, and network connections (NeuroML Level 3).

NeuroMLLevel3() - Constructor for class org.neuroml1.model.NeuroMLLevel3

NeuroMLNamespacePrefixMapper - Class in org.neuroml1.model.util

neuromlToXml(NeuroMLLevel3, String) - Method in class org.neuroml1.model.util.NeuroMLConverter

neuroMorphoRef - Variable in class org.neuroml1.model.channel.ChannelType

neuroMorphoRef - Variable in class org.neuroml1.model.channel.IonConcentration

neuroMorphoRef - Variable in class org.neuroml1.model.channel.SynapseType

neuroMorphoRef - Variable in class org.neuroml1.model.morph.Cell

neuroMorphoRef - Variable in class org.neuroml1.model.NeuroMLLevel3

NeuroMorphoRef - Class in org.neuroml1.model.meta

A reference to an entity in NeuroMorpho.org Note: This element will possibly change when a new set of schema files is adopted for adding references, authors, citations, etc.

NeuroMorphoRef() - Constructor for class org.neuroml1.model.meta.NeuroMorphoRef

neuronDBref - Variable in class org.neuroml1.model.channel.ChannelType

neuronDBref - Variable in class org.neuroml1.model.channel.IonConcentration

neuronDBref - Variable in class org.neuroml1.model.channel.SynapseType

neuronDBref - Variable in class org.neuroml1.model.morph.Cell

neuronDBref - Variable in class org.neuroml1.model.NeuroMLLevel3

NeuronDBReference - Class in org.neuroml1.model.meta

A reference to an entity in NeuronDB Note: This element will possibly change when a new set of schema files is adopted for adding references, authors, citations, etc.

NeuronDBReference() - Constructor for class org.neuroml1.model.meta.NeuronDBReference

NML1_BIO_SCHEMA - Static variable in class org.neuroml1.model.util.NeuroML1Validator

NML1_CHAN_SCHEMA - Static variable in class org.neuroml1.model.util.NeuroML1Validator

NML1_L3_SCHEMA - Static variable in class org.neuroml1.model.util.NeuroML1Validator

NML1_META_SCHEMA - Static variable in class org.neuroml1.model.util.NeuroML1Validator

NML1_MORPH_SCHEMA - Static variable in class org.neuroml1.model.util.NeuroML1Validator

NML1_NET_SCHEMA - Static variable in class org.neuroml1.model.util.NeuroML1Validator

NO - Enum constant in enum org.neuroml1.model.meta.YesNo

nodeId - Variable in class org.neuroml1.model.network.CellInstance

nonSpatialGrid - Variable in class org.neuroml1.model.network.GridArrangement

NonSpatialGrid - Class in org.neuroml1.model.meta

Specifies a grid of up to 3 dimensions, without any explicit 3D location information.

NonSpatialGrid() - Constructor for class org.neuroml1.model.meta.NonSpatialGrid

normalizationEnd - Variable in class org.neuroml1.model.morph.InhomogeneousParam.Distal

notes - Variable in class org.neuroml1.model.channel.ChannelML

notes - Variable in class org.neuroml1.model.channel.ChannelType

notes - Variable in class org.neuroml1.model.channel.DeprecatedIon

notes - Variable in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

notes - Variable in class org.neuroml1.model.channel.DeprecatedParameter

notes - Variable in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

notes - Variable in class org.neuroml1.model.channel.DoubleExponentialSynapse

notes - Variable in class org.neuroml1.model.channel.ElectricalSynapse

notes - Variable in class org.neuroml1.model.channel.IonConcentration

notes - Variable in class org.neuroml1.model.channel.SynapseType

notes - Variable in class org.neuroml1.model.morph.Cable

notes - Variable in class org.neuroml1.model.morph.Cell.Cables

notes - Variable in class org.neuroml1.model.morph.Cell.CellBody

notes - Variable in class org.neuroml1.model.morph.Cell

notes - Variable in class org.neuroml1.model.morph.Cell.Segments

notes - Variable in class org.neuroml1.model.morph.Cell.Spines

notes - Variable in class org.neuroml1.model.morph.Feature

notes - Variable in class org.neuroml1.model.morph.Morphology.Features

notes - Variable in class org.neuroml1.model.morph.Morphology

notes - Variable in class org.neuroml1.model.network.CellInstance

notes - Variable in class org.neuroml1.model.network.Connections

notes - Variable in class org.neuroml1.model.network.GridArrangement

notes - Variable in class org.neuroml1.model.network.Input

notes - Variable in class org.neuroml1.model.network.Inputs

notes - Variable in class org.neuroml1.model.network.InputSites

notes - Variable in class org.neuroml1.model.network.InputTarget

notes - Variable in class org.neuroml1.model.network.Instances

notes - Variable in class org.neuroml1.model.network.NetworkML

notes - Variable in class org.neuroml1.model.network.Population

notes - Variable in class org.neuroml1.model.network.PopulationLocation

notes - Variable in class org.neuroml1.model.network.Populations

notes - Variable in class org.neuroml1.model.network.Projection

notes - Variable in class org.neuroml1.model.network.Projections

notes - Variable in class org.neuroml1.model.network.RandomArrangement

notes - Variable in class org.neuroml1.model.network.SynapseInternalProperties

notes - Variable in class org.neuroml1.model.network.SynapseProperties

notes - Variable in class org.neuroml1.model.NeuroMLLevel3

numPerSource - Variable in class org.neuroml1.model.network.PerCellConnection

O

ObjectFactory - Class in org.neuroml1.model.bio

This object contains factory methods for each Java content interface and Java element interface generated in the org.neuroml1.model.bio package.

ObjectFactory - Class in org.neuroml1.model.channel

This object contains factory methods for each Java content interface and Java element interface generated in the org.neuroml1.model.channel package.

ObjectFactory - Class in org.neuroml1.model.meta

This object contains factory methods for each Java content interface and Java element interface generated in the org.neuroml1.model.meta package.

ObjectFactory - Class in org.neuroml1.model.morph

This object contains factory methods for each Java content interface and Java element interface generated in the org.neuroml1.model.morph package.

ObjectFactory - Class in org.neuroml1.model.network

This object contains factory methods for each Java content interface and Java element interface generated in the org.neuroml1.model.network package.

ObjectFactory - Class in org.neuroml1.model

This object contains factory methods for each Java content interface and Java element interface generated in the org.neuroml1.model package.

ObjectFactory() - Constructor for class org.neuroml1.model.bio.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.neuroml1.model.bio

ObjectFactory() - Constructor for class org.neuroml1.model.channel.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.neuroml1.model.channel

ObjectFactory() - Constructor for class org.neuroml1.model.meta.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.neuroml1.model.meta

ObjectFactory() - Constructor for class org.neuroml1.model.morph.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.neuroml1.model.morph

ObjectFactory() - Constructor for class org.neuroml1.model.network.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.neuroml1.model.network

ObjectFactory() - Constructor for class org.neuroml1.model.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.neuroml1.model

offset - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

offset - Variable in class org.neuroml1.model.channel.RateAdjustments

Offset - Class in org.neuroml1.model.channel

Java class for Offset complex type.

Offset() - Constructor for class org.neuroml1.model.channel.Offset

ohmic - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

OHMIC - Enum constant in enum org.neuroml1.model.channel.ConductanceLaw

Current is given by membrane potential times conductance (Ohm's law)

openState - Variable in class org.neuroml1.model.channel.GatingComplex

OpenState - Class in org.neuroml1.model.channel

Open state of a gating complex

OpenState() - Constructor for class org.neuroml1.model.channel.OpenState

org.neuroml1.model - package org.neuroml1.model

org.neuroml1.model.bio - package org.neuroml1.model.bio

org.neuroml1.model.channel - package org.neuroml1.model.channel

org.neuroml1.model.meta - package org.neuroml1.model.meta

org.neuroml1.model.morph - package org.neuroml1.model.morph

org.neuroml1.model.network - package org.neuroml1.model.network

org.neuroml1.model.util - package org.neuroml1.model.util

P

parameter - Variable in class org.neuroml1.model.bio.InitialMembPotential

parameter - Variable in class org.neuroml1.model.bio.IonProperties

parameter - Variable in class org.neuroml1.model.bio.Mechanism

parameter - Variable in class org.neuroml1.model.bio.SpecAxialResistance

parameter - Variable in class org.neuroml1.model.bio.SpecCapacitance

parameter - Variable in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

parameter - Variable in class org.neuroml1.model.channel.Parameters

Parameter - Class in org.neuroml1.model.channel

A single parameter which can be used in generic expressions

Parameter() - Constructor for class org.neuroml1.model.channel.Parameter

parameterisedHh - Variable in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

parameters - Variable in class org.neuroml1.model.channel.ChannelType

Parameters - Class in org.neuroml1.model.channel

Fixed value parameters which can be used in generic expressions

Parameters() - Constructor for class org.neuroml1.model.channel.Parameters

paramName - Variable in class org.neuroml1.model.bio.InhomogeneousValue

parent - Variable in class org.neuroml1.model.morph.Cable

parent - Variable in class org.neuroml1.model.morph.Path

parent - Variable in class org.neuroml1.model.morph.Segment

parent - Variable in class org.neuroml1.model.morph.Spine

passiveConductance - Variable in class org.neuroml1.model.bio.Mechanism

passiveConductanceOld - Variable in class org.neuroml1.model.bio.Mechanism

path - Variable in class org.neuroml1.model.morph.Feature

Path - Class in org.neuroml1.model.morph

Possibly branching histological structures.

Path() - Constructor for class org.neuroml1.model.morph.Path

perCellConnection - Variable in class org.neuroml1.model.network.ConnectivityPattern

PerCellConnection - Class in org.neuroml1.model.network

Connection built iteratively from each pre (or post) cell based on a number of parameters

PerCellConnection() - Constructor for class org.neuroml1.model.network.PerCellConnection

percentage - Variable in class org.neuroml1.model.network.InputSitePattern.PercentageCells

percentageCells - Variable in class org.neuroml1.model.network.InputSitePattern

PercentageCells() - Constructor for class org.neuroml1.model.network.InputSitePattern.PercentageCells

PERMEATED_SUBSTANCE - Enum constant in enum org.neuroml1.model.channel.DeprecatedIonRole

Ion passes through the channel, e.g.

PERMEATED_SUBSTANCE_FIXED_REV_POT - Enum constant in enum org.neuroml1.model.channel.DeprecatedIonRole

WARNING: Ion passes through the channel, but the reversal potential of the ion isn't altered.

Person - Class in org.neuroml1.model.meta

A generic reference to a person, for authorship, etc

Person() - Constructor for class org.neuroml1.model.meta.Person

phi - Variable in class org.neuroml1.model.channel.FixedPoolInfo

PHYSIOLOGICAL_UNITS - Enum constant in enum org.neuroml1.model.meta.Units

Milisecond, millivolt, centimeter, etc

plasticity - Variable in class org.neuroml1.model.channel.FacDepSynapse

point - Variable in class org.neuroml1.model.meta.Points

Point - Class in org.neuroml1.model.meta

A 3D point with optional diameter.

Point() - Constructor for class org.neuroml1.model.meta.Point

Point3D - Class in org.neuroml1.model.meta

A 3D point with no diameter.

Point3D() - Constructor for class org.neuroml1.model.meta.Point3D

Points - Class in org.neuroml1.model.meta

A collection of points.

Points() - Constructor for class org.neuroml1.model.meta.Points

polygon - Variable in class org.neuroml1.model.meta.Polyhedron.Polygons

polygon - Variable in class org.neuroml1.model.morph.Cell.CellBody

polygon - Variable in class org.neuroml1.model.morph.Feature

Polygon - Class in org.neuroml1.model.meta

A closed structure represented by a list of points where the first point connects with the last point.

Polygon() - Constructor for class org.neuroml1.model.meta.Polygon

polygons - Variable in class org.neuroml1.model.meta.Polyhedron

Polygons() - Constructor for class org.neuroml1.model.meta.Polyhedron.Polygons

polyhedron - Variable in class org.neuroml1.model.morph.Cell.CellBody

polyhedron - Variable in class org.neuroml1.model.morph.Feature

Polyhedron - Class in org.neuroml1.model.meta

A 3d surface to represent the cell body or histological structure.

Polyhedron() - Constructor for class org.neuroml1.model.meta.Polyhedron

Polyhedron.Polygons - Class in org.neuroml1.model.meta

Java class for anonymous complex type.

poolVolumeInfo - Variable in class org.neuroml1.model.channel.DecayingPoolModel

PoolVolumeInfo - Class in org.neuroml1.model.channel

Information on the volume of the ion pool

PoolVolumeInfo() - Constructor for class org.neuroml1.model.channel.PoolVolumeInfo

popLocation - Variable in class org.neuroml1.model.network.Population

population - Variable in class org.neuroml1.model.network.InputTarget

population - Variable in class org.neuroml1.model.network.Populations

Population - Class in org.neuroml1.model.network

Description of a cell population of the same type

Population() - Constructor for class org.neuroml1.model.network.Population

Population.CellTypeElement - Class in org.neuroml1.model.network

PopulationLocation - Class in org.neuroml1.model.network

Description of the 3D positioning of cells in the population, in place of giving explicit locations for each cell

PopulationLocation() - Constructor for class org.neuroml1.model.network.PopulationLocation

populations - Variable in class org.neuroml1.model.network.NetworkML

populations - Variable in class org.neuroml1.model.NeuroMLLevel3

Populations - Class in org.neuroml1.model.network

The list of cell populations

Populations() - Constructor for class org.neuroml1.model.network.Populations

populationSize - Variable in class org.neuroml1.model.network.RandomArrangement

POST - Enum constant in enum org.neuroml1.model.network.SynapseDirection

postCellId - Variable in class org.neuroml1.model.network.Connection

postDelay - Variable in class org.neuroml1.model.network.SynapseInternalProperties

postFractionAlong - Variable in class org.neuroml1.model.network.Connection

postSegmentId - Variable in class org.neuroml1.model.network.Connection

postSpikeThresh - Variable in class org.neuroml1.model.channel.StdpDep

potentialSynapticLocation - Variable in class org.neuroml1.model.Level3Biophysics

PotentialSynapticLocation - Class in org.neuroml1.model.network

Subset of sections on cell where synaptic connection of a particular type is allowed.

PotentialSynapticLocation() - Constructor for class org.neuroml1.model.network.PotentialSynapticLocation

PotentialSynapticLocation.GroupElementPSL2 - Class in org.neuroml1.model.network

potentialSynLoc - Variable in class org.neuroml1.model.network.Level3Connectivity

PotentialSynLoc - Class in org.neuroml1.model.network

Subset of sections on cell where synaptic connection of a particular type is allowed.

PotentialSynLoc() - Constructor for class org.neuroml1.model.network.PotentialSynLoc

PotentialSynLoc.GroupElementPSL1 - Class in org.neuroml1.model.network

power - Variable in class org.neuroml1.model.channel.Gate

PRE - Enum constant in enum org.neuroml1.model.network.SynapseDirection

PRE_AND_OR_POST - Enum constant in enum org.neuroml1.model.network.SynapseDirection

preCellId - Variable in class org.neuroml1.model.network.Connection

preDelay - Variable in class org.neuroml1.model.network.SynapseInternalProperties

preFractionAlong - Variable in class org.neuroml1.model.network.Connection

preSegmentId - Variable in class org.neuroml1.model.network.Connection

probability - Variable in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

projection - Variable in class org.neuroml1.model.network.Projections

Projection - Class in org.neuroml1.model.network

Description of how one cell population makes synaptic connections with another

Projection() - Constructor for class org.neuroml1.model.network.Projection

Projection.SourceElement - Class in org.neuroml1.model.network

Projection.TargetElement - Class in org.neuroml1.model.network

projections - Variable in class org.neuroml1.model.network.NetworkML

projections - Variable in class org.neuroml1.model.NeuroMLLevel3

Projections - Class in org.neuroml1.model.network

The list of projections from one cell population to another

Projections() - Constructor for class org.neuroml1.model.network.Projections

propDelay - Variable in class org.neuroml1.model.network.SynapseInternalProperties

properties - Variable in class org.neuroml1.model.channel.ChannelML

properties - Variable in class org.neuroml1.model.channel.ChannelType

properties - Variable in class org.neuroml1.model.channel.DeprecatedIon

properties - Variable in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

properties - Variable in class org.neuroml1.model.channel.DeprecatedParameter

properties - Variable in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

properties - Variable in class org.neuroml1.model.channel.DoubleExponentialSynapse

properties - Variable in class org.neuroml1.model.channel.ElectricalSynapse

properties - Variable in class org.neuroml1.model.channel.IonConcentration

properties - Variable in class org.neuroml1.model.channel.SynapseType

properties - Variable in class org.neuroml1.model.meta.GroupDetail

properties - Variable in class org.neuroml1.model.morph.Cable

properties - Variable in class org.neuroml1.model.morph.Cell.Cables

properties - Variable in class org.neuroml1.model.morph.Cell.CellBody

properties - Variable in class org.neuroml1.model.morph.Cell

properties - Variable in class org.neuroml1.model.morph.Cell.Segments

properties - Variable in class org.neuroml1.model.morph.Cell.Spines

properties - Variable in class org.neuroml1.model.morph.Feature

properties - Variable in class org.neuroml1.model.morph.Morphology.Features

properties - Variable in class org.neuroml1.model.morph.Morphology

properties - Variable in class org.neuroml1.model.morph.Segment

properties - Variable in class org.neuroml1.model.network.CellInstance

properties - Variable in class org.neuroml1.model.network.Connections

properties - Variable in class org.neuroml1.model.network.GridArrangement

properties - Variable in class org.neuroml1.model.network.Input

properties - Variable in class org.neuroml1.model.network.Inputs

properties - Variable in class org.neuroml1.model.network.InputSites

properties - Variable in class org.neuroml1.model.network.InputTarget

properties - Variable in class org.neuroml1.model.network.Instances

properties - Variable in class org.neuroml1.model.network.NetworkML

properties - Variable in class org.neuroml1.model.network.Population

properties - Variable in class org.neuroml1.model.network.PopulationLocation

properties - Variable in class org.neuroml1.model.network.Populations

properties - Variable in class org.neuroml1.model.network.Projection

properties - Variable in class org.neuroml1.model.network.Projections

properties - Variable in class org.neuroml1.model.network.RandomArrangement

properties - Variable in class org.neuroml1.model.network.SynapseInternalProperties

properties - Variable in class org.neuroml1.model.network.SynapseProperties

properties - Variable in class org.neuroml1.model.NeuroMLLevel3

Properties - Class in org.neuroml1.model.meta

A collection of Properties

Properties() - Constructor for class org.neuroml1.model.meta.Properties

property - Variable in class org.neuroml1.model.meta.Properties

property - Variable in class org.neuroml1.model.meta.PropertyDetail

Property - Class in org.neuroml1.model.meta

A Tag/Value/Type tuple.

Property() - Constructor for class org.neuroml1.model.meta.Property

propertyDetail - Variable in class org.neuroml1.model.morph.Morphology.PropertyDetails

PropertyDetail - Class in org.neuroml1.model.meta

Metadata for each Property.

PropertyDetail() - Constructor for class org.neuroml1.model.meta.PropertyDetail

propertyDetails - Variable in class org.neuroml1.model.morph.Morphology

PropertyDetails() - Constructor for class org.neuroml1.model.morph.Morphology.PropertyDetails

proximal - Variable in class org.neuroml1.model.morph.InhomogeneousParam

proximal - Variable in class org.neuroml1.model.morph.Segment

proximal - Variable in class org.neuroml1.model.morph.Spine

Proximal() - Constructor for class org.neuroml1.model.morph.InhomogeneousParam.Proximal

publication - Variable in class org.neuroml1.model.channel.ChannelType

publication - Variable in class org.neuroml1.model.channel.IonConcentration

publication - Variable in class org.neuroml1.model.channel.SynapseType

publication - Variable in class org.neuroml1.model.morph.Cell

publication - Variable in class org.neuroml1.model.NeuroMLLevel3

Publication - Class in org.neuroml1.model.meta

A reference to a publication Note: This element will possibly change when a new set of schema files is adopted for adding references, authors, citations, etc.

Publication() - Constructor for class org.neuroml1.model.meta.Publication

pubmedRef - Variable in class org.neuroml1.model.meta.Publication

pulseInput - Variable in class org.neuroml1.model.network.Input

PulseInput - Class in org.neuroml1.model.network

A single input pulse.

PulseInput() - Constructor for class org.neuroml1.model.network.PulseInput

pulseInputInstance - Variable in class org.neuroml1.model.network.InputSite

Q

q10Factor - Variable in class org.neuroml1.model.channel.Q10Settings

q10Settings - Variable in class org.neuroml1.model.channel.CurrentVoltageRelation

q10Settings - Variable in class org.neuroml1.model.channel.RateAdjustments

Q10Settings - Class in org.neuroml1.model.channel

Q10 scaling affects the tau in the rate equations.

Q10Settings() - Constructor for class org.neuroml1.model.channel.Q10Settings

R

randomArrangement - Variable in class org.neuroml1.model.network.PopulationLocation

RandomArrangement - Class in org.neuroml1.model.network

A random arrangement of cells in a 3D location.

RandomArrangement() - Constructor for class org.neuroml1.model.network.RandomArrangement

randomStim - Variable in class org.neuroml1.model.network.Input

RandomStim - Class in org.neuroml1.model.network

A random stimulation at a specific frequency.

RandomStim() - Constructor for class org.neuroml1.model.network.RandomStim

randomStimInstance - Variable in class org.neuroml1.model.network.InputSite

RandomStimInstance - Class in org.neuroml1.model.network

Instance/site specific random stimulation at a specific frequency.

RandomStimInstance() - Constructor for class org.neuroml1.model.network.RandomStimInstance

rate - Variable in class org.neuroml1.model.channel.SteadyState

rate - Variable in class org.neuroml1.model.channel.TimeCourse

rate - Variable in class org.neuroml1.model.channel.Transition

rateAdjustments - Variable in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

RateAdjustments - Class in org.neuroml1.model.channel

Adjustments necessary to all the rate equations, e.g temperature dependencies, voltage offsets introduced when moving between species, etc.

RateAdjustments() - Constructor for class org.neuroml1.model.channel.RateAdjustments

readNeuroML(String) - Method in class org.neuroml1.model.util.NeuroMLConverter

RectangularBox - Class in org.neuroml1.model.meta

A Rectangular Box for locating cells in 3D.

RectangularBox() - Constructor for class org.neuroml1.model.meta.RectangularBox

RectangularBox.Size - Class in org.neuroml1.model.meta

Java class for anonymous complex type.

rectangularLocation - Variable in class org.neuroml1.model.network.GridArrangement

rectangularLocation - Variable in class org.neuroml1.model.network.RandomArrangement

reference - Variable in class org.neuroml1.model.network.PopulationLocation

restingConc - Variable in class org.neuroml1.model.channel.DecayingPoolModel

restingConcAttribute - Variable in class org.neuroml1.model.channel.DecayingPoolModel

reversalPotential - Variable in class org.neuroml1.model.channel.DoubleExponentialSynapse

riseTime - Variable in class org.neuroml1.model.channel.DoubleExponentialSynapse

role - Variable in class org.neuroml1.model.channel.DeprecatedIon

S

scale - Variable in class org.neuroml1.model.channel.SteadyState

scale - Variable in class org.neuroml1.model.channel.TimeCourse

scale - Variable in class org.neuroml1.model.channel.Transition

segment - Variable in class org.neuroml1.model.morph.Cell.Segments

Segment - Class in org.neuroml1.model.morph

Defines the smallest unit within a possibly branching structure, such as a segment of a dendrite or axon.

Segment() - Constructor for class org.neuroml1.model.morph.Segment

segmentId - Variable in class org.neuroml1.model.network.InputSite

segmentId - Variable in class org.neuroml1.model.network.SynapticLocation

segments - Variable in class org.neuroml1.model.morph.Cell

Segments() - Constructor for class org.neuroml1.model.morph.Cell.Segments

setAllCells(InputSitePattern.AllCells) - Method in class org.neuroml1.model.network.InputSitePattern

Sets the value of the allCells property.

setAllToAll(ConnectivityPattern.AllToAll) - Method in class org.neuroml1.model.network.ConnectivityPattern

Sets the value of the allToAll property.

setAlpha(DeprecatedRateConstantEqnChoice) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Sets the value of the alpha property.

setAlpha(DeprecatedRateConstVoltConcDep) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Sets the value of the alpha property.

setAmplitude(double) - Method in class org.neuroml1.model.network.PulseInput

Sets the value of the amplitude property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.channel.ChannelML

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.channel.ChannelType

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.channel.DeprecatedIon

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.channel.DeprecatedParameter

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.channel.ElectricalSynapse

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.channel.IonConcentration

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.morph.Cable

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.morph.Cell.Cables

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.morph.Cell.CellBody

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.morph.Cell.Segments

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.morph.Cell.Spines

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.morph.Feature

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.morph.Morphology.Features

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.CellInstance

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.Connections

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.GridArrangement

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.Input

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.Inputs

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.InputSites

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.InputTarget

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.Instances

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.NetworkML

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.Population

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.PopulationLocation

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.Populations

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.Projection

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.Projections

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.RandomArrangement

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.SynapseInternalProperties

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.network.SynapseProperties

Sets the value of the annotation property.

setAnnotation(Annotation) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the annotation property.

setAuthorList(Authors) - Method in class org.neuroml1.model.channel.ChannelType

Sets the value of the authorList property.

setAuthorList(Authors) - Method in class org.neuroml1.model.channel.IonConcentration

Sets the value of the authorList property.

setAuthorList(Authors) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the authorList property.

setAuthorList(Authors) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the authorList property.

setAuthorList(Authors) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the authorList property.

setBeta(DeprecatedRateConstantEqnChoice) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Sets the value of the beta property.

setBeta(DeprecatedRateConstVoltConcDep) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Sets the value of the beta property.

setBiophysics(Level3Biophysics) - Method in class org.neuroml1.model.Level3Cell

Sets the value of the biophysics property.

setBlock(Block) - Method in class org.neuroml1.model.channel.BlockingSynapse

Sets the value of the block property.

setBlockingSyn(BlockingSynapse) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the blockingSyn property.

setCable(BigInteger) - Method in class org.neuroml1.model.morph.Segment

Sets the value of the cable property.

setCables(Cell.Cables) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the cables property.

setCeiling(Double) - Method in class org.neuroml1.model.channel.DecayingPoolModel

Sets the value of the ceiling property.

setCeilingAttribute(Double) - Method in class org.neuroml1.model.channel.DecayingPoolModel

Sets the value of the ceilingAttribute property.

setCellBody(Cell.CellBody) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the cellBody property.

setCellGroup(String) - Method in class org.neuroml1.model.network.InputTarget

Sets the value of the cellGroup property.

setCellId(BigInteger) - Method in class org.neuroml1.model.network.InputSite

Sets the value of the cellId property.

setCellId(BigInteger) - Method in class org.neuroml1.model.network.SynapticLocation

Sets the value of the cellId property.

setCells(Level3Cells) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the cells property.

setCells(Cells) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the cells property.

setCellType(Population.CellTypeElement) - Method in class org.neuroml1.model.network.Population

Sets the value of the cellType property.

setCellTypeAttribute(String) - Method in class org.neuroml1.model.network.Population

Sets the value of the cellTypeAttribute property.

setCenter(Point) - Method in class org.neuroml1.model.meta.Sphere

Sets the value of the center property.

setChannels(ChannelML) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the channels property.

setCharge(BigInteger) - Method in class org.neuroml1.model.channel.ConcDependence

Sets the value of the charge property.

setCharge(BigInteger) - Method in class org.neuroml1.model.channel.ConcFactor

Sets the value of the charge property.

setCharge(BigInteger) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the charge property.

setCharge(BigInteger) - Method in class org.neuroml1.model.channel.DeprecatedIon

Sets the value of the charge property.

setComment(String) - Method in class org.neuroml1.model.channel.ImplementationPrefs

Sets the value of the comment property.

setComment(String) - Method in class org.neuroml1.model.meta.ModelDBReference

Sets the value of the comment property.

setComment(String) - Method in class org.neuroml1.model.meta.NeuroMorphoRef

Sets the value of the comment property.

setComment(String) - Method in class org.neuroml1.model.meta.NeuronDBReference

Sets the value of the comment property.

setComment(String) - Method in class org.neuroml1.model.meta.Person

Sets the value of the comment property.

setComment(String) - Method in class org.neuroml1.model.meta.Publication

Sets the value of the comment property.

setConc(double) - Method in class org.neuroml1.model.channel.Block

Sets the value of the conc property.

setConcDependence(ConcDependence) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the concDependence property.

setConcDependence(ConcDependence) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Sets the value of the concDependence property.

setConcFactor(ConcFactor) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the concFactor property.

setConcFactor(ConcFactor) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Sets the value of the concFactor property.

setCondLaw(ConductanceLaw) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the condLaw property.

setConductance(double) - Method in class org.neuroml1.model.channel.ElectricalSynapse

Sets the value of the conductance property.

setConductance(DeprecatedOhmic.Conductance) - Method in class org.neuroml1.model.channel.DeprecatedOhmic

Sets the value of the conductance property.

setConnections(Connections) - Method in class org.neuroml1.model.network.Projection

Sets the value of the connections property.

setConnectivity(Level3Connectivity) - Method in class org.neuroml1.model.Level3Cell

Sets the value of the connectivity property.

setConnectivityPattern(ConnectivityPattern) - Method in class org.neuroml1.model.network.Projection

Sets the value of the connectivityPattern property.

setCorner(Point) - Method in class org.neuroml1.model.meta.RectangularBox

Sets the value of the corner property.

setCurrentVoltageRelation(CurrentVoltageRelation) - Method in class org.neuroml1.model.channel.ChannelType

Sets the value of the currentVoltageRelation property.

setDecayConstant(Double) - Method in class org.neuroml1.model.channel.DecayingPoolModel

Sets the value of the decayConstant property.

setDecayConstantAttribute(Double) - Method in class org.neuroml1.model.channel.DecayingPoolModel

Sets the value of the decayConstantAttribute property.

setDecayingPoolModel(DecayingPoolModel) - Method in class org.neuroml1.model.channel.IonConcentration

Sets the value of the decayingPoolModel property.

setDecayTime(double) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Sets the value of the decayTime property.

setDecayTime2(Double) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

Sets the value of the decayTime2 property.

setDecayTime3(Double) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

Sets the value of the decayTime3 property.

setDefaultErev(Double) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the defaultErev property.

setDefaultErev(Double) - Method in class org.neuroml1.model.channel.DeprecatedIon

Sets the value of the defaultErev property.

setDefaultGmax(double) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Sets the value of the defaultGmax property.

setDefaultGmax(Double) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the defaultGmax property.

setDefaultValues(SynapseInternalProperties) - Method in class org.neuroml1.model.network.GlobalSynapticProperties

Sets the value of the defaultValues property.

setDefaultValues(SynapseInternalProperties) - Method in class org.neuroml1.model.network.SynapseProperties

Sets the value of the defaultValues property.

setDelay(double) - Method in class org.neuroml1.model.network.PulseInput

Sets the value of the delay property.

setDelWeightLtd(double) - Method in class org.neuroml1.model.channel.StdpDep

Sets the value of the delWeightLtd property.

setDelWeightLtp(double) - Method in class org.neuroml1.model.channel.StdpDep

Sets the value of the delWeightLtp property.

setDensity(YesNo) - Method in class org.neuroml1.model.channel.ChannelType

Sets the value of the density property.

setDepth(Double) - Method in class org.neuroml1.model.meta.RectangularBox.Size

Sets the value of the depth property.

setDescription(String) - Method in class org.neuroml1.model.meta.GroupDetail

Sets the value of the description property.

setDescription(String) - Method in class org.neuroml1.model.meta.PropertyDetail

Sets the value of the description property.

setDiameter(Double) - Method in class org.neuroml1.model.meta.Point

Sets the value of the diameter property.

setDirection(String) - Method in class org.neuroml1.model.network.PerCellConnection

Sets the value of the direction property.

setDistal(Point) - Method in class org.neuroml1.model.morph.Segment

Sets the value of the distal property.

setDistal(Point) - Method in class org.neuroml1.model.morph.Spine

Sets the value of the distal property.

setDistal(InhomogeneousParam.Distal) - Method in class org.neuroml1.model.morph.InhomogeneousParam

Sets the value of the distal property.

setDoubExpSyn(DoubleExponentialSynapse) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the doubExpSyn property.

setDuration(double) - Method in class org.neuroml1.model.network.PulseInput

Sets the value of the duration property.

setElectricalSyn(ElectricalSynapse) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the electricalSyn property.

setEmail(String) - Method in class org.neuroml1.model.meta.Person

Sets the value of the email property.

setEta(double) - Method in class org.neuroml1.model.channel.Block

Sets the value of the eta property.

setExperimentalTemp(double) - Method in class org.neuroml1.model.channel.Q10Settings

Sets the value of the experimentalTemp property.

setExpr(String) - Method in class org.neuroml1.model.channel.ConcFactor

Sets the value of the expr property.

setExpr(String) - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

Sets the value of the expr property.

setExpr(String) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

Sets the value of the expr property.

setExpr(String) - Method in class org.neuroml1.model.channel.SteadyState

Sets the value of the expr property.

setExpr(String) - Method in class org.neuroml1.model.channel.TimeCourse

Sets the value of the expr property.

setExpr(String) - Method in class org.neuroml1.model.channel.Transition

Sets the value of the expr property.

setExprForm(CoreEquationType) - Method in class org.neuroml1.model.channel.SteadyState

Sets the value of the exprForm property.

setExprForm(CoreEquationType) - Method in class org.neuroml1.model.channel.TimeCourse

Sets the value of the exprForm property.

setExprForm(CoreEquationType) - Method in class org.neuroml1.model.channel.Transition

Sets the value of the exprForm property.

setFacDepSyn(FacDepSynapse) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the facDepSyn property.

setFeatures(Morphology.Features) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the features property.

setFixedErev(YesNo) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the fixedErev property.

setFixedPoolInfo(FixedPoolInfo) - Method in class org.neuroml1.model.channel.DecayingPoolModel

Sets the value of the fixedPoolInfo property.

setFixedProbability(ConnectivityPattern.FixedProbability) - Method in class org.neuroml1.model.network.ConnectivityPattern

Sets the value of the fixedProbability property.

setFixedQ10(Double) - Method in class org.neuroml1.model.channel.Q10Settings

Sets the value of the fixedQ10 property.

setFractAlongParent(Double) - Method in class org.neuroml1.model.morph.Cable

Sets the value of the fractAlongParent property.

setFractAlongParentAttribute(Double) - Method in class org.neuroml1.model.morph.Cable

Sets the value of the fractAlongParentAttribute property.

setFraction(Double) - Method in class org.neuroml1.model.channel.Gate.State

Sets the value of the fraction property.

setFraction(Double) - Method in class org.neuroml1.model.channel.OpenState

Sets the value of the fraction property.

setFractionAlong(Double) - Method in class org.neuroml1.model.network.InputSite

Sets the value of the fractionAlong property.

setFractionAlong(Double) - Method in class org.neuroml1.model.network.SynapticLocation

Sets the value of the fractionAlong property.

setFreePoints(FreePoints) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the freePoints property.

setFrequency(double) - Method in class org.neuroml1.model.network.RandomStim

Sets the value of the frequency property.

setFrequency(double) - Method in class org.neuroml1.model.network.RandomStimInstance

Sets the value of the frequency property.

setFrom(String) - Method in class org.neuroml1.model.channel.SteadyState

Sets the value of the from property.

setFrom(String) - Method in class org.neuroml1.model.channel.TimeCourse

Sets the value of the from property.

setFrom(String) - Method in class org.neuroml1.model.channel.Transition

Sets the value of the from property.

setFullTitle(String) - Method in class org.neuroml1.model.meta.Publication

Sets the value of the fullTitle property.

setGamma(double) - Method in class org.neuroml1.model.channel.Block

Sets the value of the gamma property.

setGamma(DeprecatedRateConstantEqnChoice) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Sets the value of the gamma property.

setGamma(DeprecatedRateConstantEqnChoice) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Sets the value of the gamma property.

setGate(String) - Method in class org.neuroml1.model.channel.Q10Settings

Sets the value of the gate property.

setGeneric(DeprecatedGenericEquation) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Sets the value of the generic property.

setGeneric(DeprecatedGenericEquation) - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

Sets the value of the generic property.

setGenericEquationHh(DeprecatedGenericEquation) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Sets the value of the genericEquationHh property.

setGenericEquationHh(DeprecatedGenericEquation) - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

Sets the value of the genericEquationHh property.

setGRefrac(double) - Method in class org.neuroml1.model.channel.IntegrateAndFire

Sets the value of the gRefrac property.

setGridArrangement(GridArrangement) - Method in class org.neuroml1.model.network.PopulationLocation

Sets the value of the gridArrangement property.

setGroup(String) - Method in class org.neuroml1.model.meta.GroupDetail

Sets the value of the group property.

setGroupDetails(Morphology.GroupDetails) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the groupDetails property.

setHeight(Double) - Method in class org.neuroml1.model.meta.RectangularBox.Size

Sets the value of the height property.

setId(String) - Method in class org.neuroml1.model.channel.ClosedState

Sets the value of the id property.

setId(String) - Method in class org.neuroml1.model.channel.OpenState

Sets the value of the id property.

setId(BigInteger) - Method in class org.neuroml1.model.morph.Cable

Sets the value of the id property.

setId(BigInteger) - Method in class org.neuroml1.model.morph.CableGroup.Cable

Sets the value of the id property.

setId(BigInteger) - Method in class org.neuroml1.model.morph.Path

Sets the value of the id property.

setId(BigInteger) - Method in class org.neuroml1.model.morph.Segment

Sets the value of the id property.

setId(BigInteger) - Method in class org.neuroml1.model.network.CellInstance

Sets the value of the id property.

setId(BigInteger) - Method in class org.neuroml1.model.network.Connection

Sets the value of the id property.

setImplPrefs(ImplementationPrefs) - Method in class org.neuroml1.model.channel.ChannelType

Sets the value of the implPrefs property.

setInf(DeprecatedRateConstantEqnChoice) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Sets the value of the inf property.

setInf(DeprecatedRateConstVoltConcDep) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Sets the value of the inf property.

setInitialisation(Initialisation) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Sets the value of the initialisation property.

setInitialisation(Initialisation) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Sets the value of the initialisation property.

setInitialisation(Initialisation) - Method in class org.neuroml1.model.channel.GatingComplex

Sets the value of the initialisation property.

setInitialMembPotential(InitialMembPotential) - Method in class org.neuroml1.model.bio.Biophysics

Sets the value of the initialMembPotential property.

setInitMembPotential(InitialMembPotential) - Method in class org.neuroml1.model.bio.Biophysics

Sets the value of the initMembPotential property.

setInitReleaseProb(double) - Method in class org.neuroml1.model.channel.FacDep

Sets the value of the initReleaseProb property.

setInputs(Inputs) - Method in class org.neuroml1.model.network.NetworkML

Sets the value of the inputs property.

setInputs(Inputs) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the inputs property.

setInstances(BigInteger) - Method in class org.neuroml1.model.channel.GatingComplex

Sets the value of the instances property.

setInstances(Instances) - Method in class org.neuroml1.model.network.Population

Sets the value of the instances property.

setInstitution(String) - Method in class org.neuroml1.model.meta.Person

Sets the value of the institution property.

setIntegrateAndFire(IntegrateAndFire) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the integrateAndFire property.

setInternalDelay(Double) - Method in class org.neuroml1.model.network.SynapseInternalProperties

Sets the value of the internalDelay property.

setInvDecayConstant(Double) - Method in class org.neuroml1.model.channel.DecayingPoolModel

Sets the value of the invDecayConstant property.

setInvDecayConstantAttribute(Double) - Method in class org.neuroml1.model.channel.DecayingPoolModel

Sets the value of the invDecayConstantAttribute property.

setIon(String) - Method in class org.neuroml1.model.channel.ConcDependence

Sets the value of the ion property.

setIon(String) - Method in class org.neuroml1.model.channel.ConcFactor

Sets the value of the ion property.

setIon(String) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the ion property.

setIon(String) - Method in class org.neuroml1.model.channel.DeprecatedOhmic

Sets the value of the ion property.

setIonProperties(IonProperties) - Method in class org.neuroml1.model.bio.Biophysics

Sets the value of the ionProperties property.

setIonSpecies(IonSpecies) - Method in class org.neuroml1.model.channel.IonConcentration

Sets the value of the ionSpecies property.

setLength(Double) - Method in class org.neuroml1.model.morph.Spine

Sets the value of the length property.

setLengthUnits(LengthUnits) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the lengthUnits property.

setLengthUnits(LengthUnits) - Method in class org.neuroml1.model.network.NetworkML

Sets the value of the lengthUnits property.

setLengthUnits(LengthUnits) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the lengthUnits property.

setLengthUnitsAlt(LengthUnits) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the lengthUnitsAlt property.

setLengthUnitsAlt(LengthUnits) - Method in class org.neuroml1.model.network.NetworkML

Sets the value of the lengthUnitsAlt property.

setLengthUnitsAlt(LengthUnits) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the lengthUnitsAlt property.

setLocation(Point3D) - Method in class org.neuroml1.model.network.CellInstance

Sets the value of the location property.

setMaxConc(double) - Method in class org.neuroml1.model.channel.ConcDependence

Sets the value of the maxConc property.

setMaxConc(double) - Method in class org.neuroml1.model.channel.ConcFactor

Sets the value of the maxConc property.

setMaxConductance(double) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Sets the value of the maxConductance property.

setMaxConductance2(Double) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

Sets the value of the maxConductance2 property.

setMaxConductance3(Double) - Method in class org.neuroml1.model.channel.MultiDecaySynapse

Sets the value of the maxConductance3 property.

setMaxPerTarget(BigInteger) - Method in class org.neuroml1.model.network.PerCellConnection

Sets the value of the maxPerTarget property.

setMaxSynWeight(double) - Method in class org.neuroml1.model.channel.StdpDep

Sets the value of the maxSynWeight property.

setMaxV(Double) - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

Sets the value of the maxV property.

setMetric(String) - Method in class org.neuroml1.model.morph.InhomogeneousParam

Sets the value of the metric property.

setMidpoint(String) - Method in class org.neuroml1.model.channel.SteadyState

Sets the value of the midpoint property.

setMidpoint(String) - Method in class org.neuroml1.model.channel.TimeCourse

Sets the value of the midpoint property.

setMidpoint(String) - Method in class org.neuroml1.model.channel.Transition

Sets the value of the midpoint property.

setMinConc(double) - Method in class org.neuroml1.model.channel.ConcDependence

Sets the value of the minConc property.

setMinConc(double) - Method in class org.neuroml1.model.channel.ConcFactor

Sets the value of the minConc property.

setMinV(Double) - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

Sets the value of the minV property.

setModelName(String) - Method in class org.neuroml1.model.meta.ModelDBReference

Sets the value of the modelName property.

setModelName(String) - Method in class org.neuroml1.model.meta.NeuronDBReference

Sets the value of the modelName property.

setMorphologyRef(String) - Method in class org.neuroml1.model.meta.NeuroMorphoRef

Sets the value of the morphologyRef property.

setMultiDecaySyn(MultiDecaySynapse) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the multiDecaySyn property.

setName(String) - Method in class org.neuroml1.model.bio.IonProperties

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.bio.Mechanism

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.bio.NamedParameter

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.bio.VariableNamedParameter

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.bio.VariableParameter

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.ChannelType

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.ConcDependence

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.DeprecatedIon

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.DeprecatedKSState

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.DeprecatedParameter

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.Gate.State

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.GatingComplex

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.IonConcentration

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.IonSpecies

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.Parameter

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.SteadyState

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.TimeCourse

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.channel.Transition

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.meta.Person

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.meta.Points

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.meta.RectangularBox

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.meta.Sphere

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.morph.Cable

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.morph.CableGroup

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.morph.Feature

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.morph.InhomogeneousParam

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.morph.Segment

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.network.Input

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.network.NetworkML

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.network.Population

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.network.Projection

Sets the value of the name property.

setName(String) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the name property.

setNodeId(BigInteger) - Method in class org.neuroml1.model.network.CellInstance

Sets the value of the nodeId property.

setNonSpatialGrid(NonSpatialGrid) - Method in class org.neuroml1.model.network.GridArrangement

Sets the value of the nonSpatialGrid property.

setNormalizationEnd(double) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

Sets the value of the normalizationEnd property.

setNotes(String) - Method in class org.neuroml1.model.channel.ChannelML

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.channel.ChannelType

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.channel.DeprecatedIon

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.channel.DeprecatedParameter

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.channel.ElectricalSynapse

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.channel.IonConcentration

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.morph.Cable

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.morph.Cell.Cables

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.morph.Cell.CellBody

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.morph.Cell.Segments

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.morph.Cell.Spines

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.morph.Feature

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.morph.Morphology.Features

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.CellInstance

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.Connections

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.GridArrangement

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.Input

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.Inputs

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.InputSites

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.InputTarget

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.Instances

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.NetworkML

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.Population

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.PopulationLocation

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.Populations

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.Projection

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.Projections

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.RandomArrangement

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.SynapseInternalProperties

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.network.SynapseProperties

Sets the value of the notes property.

setNotes(String) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the notes property.

setNumPerSource(double) - Method in class org.neuroml1.model.network.PerCellConnection

Sets the value of the numPerSource property.

setOffset(Offset) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the offset property.

setOffset(Offset) - Method in class org.neuroml1.model.channel.RateAdjustments

Sets the value of the offset property.

setOhmic(DeprecatedOhmic) - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

Sets the value of the ohmic property.

setParameterisedHh(DeprecatedAkdEquation) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Sets the value of the parameterisedHh property.

setParameters(Parameters) - Method in class org.neuroml1.model.channel.ChannelType

Sets the value of the parameters property.

setParamName(String) - Method in class org.neuroml1.model.bio.InhomogeneousValue

Sets the value of the paramName property.

setParent(BigInteger) - Method in class org.neuroml1.model.morph.Cable

Sets the value of the parent property.

setParent(BigInteger) - Method in class org.neuroml1.model.morph.Path

Sets the value of the parent property.

setParent(BigInteger) - Method in class org.neuroml1.model.morph.Segment

Sets the value of the parent property.

setParent(BigInteger) - Method in class org.neuroml1.model.morph.Spine

Sets the value of the parent property.

setPassiveConductance(Boolean) - Method in class org.neuroml1.model.bio.Mechanism

Sets the value of the passiveConductance property.

setPassiveConductanceOld(Boolean) - Method in class org.neuroml1.model.bio.Mechanism

Sets the value of the passiveConductanceOld property.

setPerCellConnection(PerCellConnection) - Method in class org.neuroml1.model.network.ConnectivityPattern

Sets the value of the perCellConnection property.

setPercentage(Double) - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

Sets the value of the percentage property.

setPercentageCells(InputSitePattern.PercentageCells) - Method in class org.neuroml1.model.network.InputSitePattern

Sets the value of the percentageCells property.

setPhi(double) - Method in class org.neuroml1.model.channel.FixedPoolInfo

Sets the value of the phi property.

setPlasticity(FacDep) - Method in class org.neuroml1.model.channel.FacDepSynapse

Sets the value of the plasticity property.

setPolygon(Polygon) - Method in class org.neuroml1.model.morph.Cell.CellBody

Sets the value of the polygon property.

setPolygons(Polyhedron.Polygons) - Method in class org.neuroml1.model.meta.Polyhedron

Sets the value of the polygons property.

setPolyhedron(Polyhedron) - Method in class org.neuroml1.model.morph.Cell.CellBody

Sets the value of the polyhedron property.

setPoolVolumeInfo(PoolVolumeInfo) - Method in class org.neuroml1.model.channel.DecayingPoolModel

Sets the value of the poolVolumeInfo property.

setPopLocation(PopulationLocation) - Method in class org.neuroml1.model.network.Population

Sets the value of the popLocation property.

setPopulation(String) - Method in class org.neuroml1.model.network.InputTarget

Sets the value of the population property.

setPopulations(Populations) - Method in class org.neuroml1.model.network.NetworkML

Sets the value of the populations property.

setPopulations(Populations) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the populations property.

setPopulationSize(BigInteger) - Method in class org.neuroml1.model.network.RandomArrangement

Sets the value of the populationSize property.

setPostCellId(BigInteger) - Method in class org.neuroml1.model.network.Connection

Sets the value of the postCellId property.

setPostDelay(Double) - Method in class org.neuroml1.model.network.SynapseInternalProperties

Sets the value of the postDelay property.

setPostFractionAlong(Double) - Method in class org.neuroml1.model.network.Connection

Sets the value of the postFractionAlong property.

setPostSegmentId(BigInteger) - Method in class org.neuroml1.model.network.Connection

Sets the value of the postSegmentId property.

setPostSpikeThresh(double) - Method in class org.neuroml1.model.channel.StdpDep

Sets the value of the postSpikeThresh property.

setPower(BigInteger) - Method in class org.neuroml1.model.channel.Gate

Sets the value of the power property.

setPreCellId(BigInteger) - Method in class org.neuroml1.model.network.Connection

Sets the value of the preCellId property.

setPreDelay(Double) - Method in class org.neuroml1.model.network.SynapseInternalProperties

Sets the value of the preDelay property.

setPreFractionAlong(Double) - Method in class org.neuroml1.model.network.Connection

Sets the value of the preFractionAlong property.

setPreSegmentId(BigInteger) - Method in class org.neuroml1.model.network.Connection

Sets the value of the preSegmentId property.

setProbability(Double) - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

Sets the value of the probability property.

setProjections(Projections) - Method in class org.neuroml1.model.network.NetworkML

Sets the value of the projections property.

setProjections(Projections) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the projections property.

setPropDelay(Double) - Method in class org.neuroml1.model.network.SynapseInternalProperties

Sets the value of the propDelay property.

setProperties(Properties) - Method in class org.neuroml1.model.channel.ChannelML

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.channel.ChannelType

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.channel.DeprecatedIon

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.channel.DeprecatedParameter

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.channel.ElectricalSynapse

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.channel.IonConcentration

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.morph.Cable

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.morph.Cell.Cables

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.morph.Cell.CellBody

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.morph.Cell.Segments

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.morph.Cell.Spines

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.morph.Feature

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.morph.Morphology.Features

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.morph.Segment

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.CellInstance

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.Connections

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.GridArrangement

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.Input

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.Inputs

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.InputSites

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.InputTarget

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.Instances

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.NetworkML

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.Population

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.PopulationLocation

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.Populations

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.Projection

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.Projections

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.RandomArrangement

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.SynapseInternalProperties

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.network.SynapseProperties

Sets the value of the properties property.

setProperties(Properties) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the properties property.

setProperty(String) - Method in class org.neuroml1.model.meta.PropertyDetail

Sets the value of the property property.

setPropertyDetails(Morphology.PropertyDetails) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the propertyDetails property.

setProximal(Point) - Method in class org.neuroml1.model.morph.Segment

Sets the value of the proximal property.

setProximal(Point) - Method in class org.neuroml1.model.morph.Spine

Sets the value of the proximal property.

setProximal(InhomogeneousParam.Proximal) - Method in class org.neuroml1.model.morph.InhomogeneousParam

Sets the value of the proximal property.

setPubmedRef(String) - Method in class org.neuroml1.model.meta.Publication

Sets the value of the pubmedRef property.

setPulseInput(PulseInput) - Method in class org.neuroml1.model.network.Input

Sets the value of the pulseInput property.

setPulseInputInstance(PulseInput) - Method in class org.neuroml1.model.network.InputSite

Sets the value of the pulseInputInstance property.

setQ10Factor(Double) - Method in class org.neuroml1.model.channel.Q10Settings

Sets the value of the q10Factor property.

setRandomArrangement(RandomArrangement) - Method in class org.neuroml1.model.network.PopulationLocation

Sets the value of the randomArrangement property.

setRandomStim(RandomStim) - Method in class org.neuroml1.model.network.Input

Sets the value of the randomStim property.

setRandomStimInstance(RandomStimInstance) - Method in class org.neuroml1.model.network.InputSite

Sets the value of the randomStimInstance property.

setRate(String) - Method in class org.neuroml1.model.channel.SteadyState

Sets the value of the rate property.

setRate(String) - Method in class org.neuroml1.model.channel.TimeCourse

Sets the value of the rate property.

setRate(String) - Method in class org.neuroml1.model.channel.Transition

Sets the value of the rate property.

setRateAdjustments(RateAdjustments) - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

Sets the value of the rateAdjustments property.

setRectangularLocation(RectangularBox) - Method in class org.neuroml1.model.network.GridArrangement

Sets the value of the rectangularLocation property.

setRectangularLocation(RectangularBox) - Method in class org.neuroml1.model.network.RandomArrangement

Sets the value of the rectangularLocation property.

setReference(String) - Method in class org.neuroml1.model.network.PopulationLocation

Sets the value of the reference property.

setRestingConc(Double) - Method in class org.neuroml1.model.channel.DecayingPoolModel

Sets the value of the restingConc property.

setRestingConcAttribute(Double) - Method in class org.neuroml1.model.channel.DecayingPoolModel

Sets the value of the restingConcAttribute property.

setReversalPotential(double) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Sets the value of the reversalPotential property.

setRiseTime(double) - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

Sets the value of the riseTime property.

setRole(DeprecatedIonRole) - Method in class org.neuroml1.model.channel.DeprecatedIon

Sets the value of the role property.

setScale(String) - Method in class org.neuroml1.model.channel.SteadyState

Sets the value of the scale property.

setScale(String) - Method in class org.neuroml1.model.channel.TimeCourse

Sets the value of the scale property.

setScale(String) - Method in class org.neuroml1.model.channel.Transition

Sets the value of the scale property.

setSegmentId(BigInteger) - Method in class org.neuroml1.model.network.InputSite

Sets the value of the segmentId property.

setSegmentId(BigInteger) - Method in class org.neuroml1.model.network.SynapticLocation

Sets the value of the segmentId property.

setSegments(Cell.Segments) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the segments property.

setShape(SpineShape) - Method in class org.neuroml1.model.morph.Spine

Sets the value of the shape property.

setShellThickness(Double) - Method in class org.neuroml1.model.channel.PoolVolumeInfo

Sets the value of the shellThickness property.

setShellThicknessAttribute(Double) - Method in class org.neuroml1.model.channel.PoolVolumeInfo

Sets the value of the shellThicknessAttribute property.

setSitePattern(InputSitePattern) - Method in class org.neuroml1.model.network.InputTarget

Sets the value of the sitePattern property.

setSites(InputSites) - Method in class org.neuroml1.model.network.InputTarget

Sets the value of the sites property.

setSize(BigInteger) - Method in class org.neuroml1.model.network.Connections

Sets the value of the size property.

setSize(BigInteger) - Method in class org.neuroml1.model.network.InputSites

Sets the value of the size property.

setSize(BigInteger) - Method in class org.neuroml1.model.network.Instances

Sets the value of the size property.

setSize(RectangularBox.Size) - Method in class org.neuroml1.model.meta.RectangularBox

Sets the value of the size property.

setSource(String) - Method in class org.neuroml1.model.channel.DeprecatedTransition

Sets the value of the source property.

setSource(Projection.SourceElement) - Method in class org.neuroml1.model.network.Projection

Sets the value of the source property.

setSourceAttribute(String) - Method in class org.neuroml1.model.network.Projection

Sets the value of the sourceAttribute property.

setSpacing(GridArrangement.Spacing) - Method in class org.neuroml1.model.network.GridArrangement

Sets the value of the spacing property.

setSpecAxialResistance(SpecAxialResistance) - Method in class org.neuroml1.model.bio.Biophysics

Sets the value of the specAxialResistance property.

setSpecCapacitance(SpecCapacitance) - Method in class org.neuroml1.model.bio.Biophysics

Sets the value of the specCapacitance property.

setSpecies(String) - Method in class org.neuroml1.model.channel.Block

Sets the value of the species property.

setSpecificAxialResistance(SpecAxialResistance) - Method in class org.neuroml1.model.bio.Biophysics

Sets the value of the specificAxialResistance property.

setSpecificCapacitance(SpecCapacitance) - Method in class org.neuroml1.model.bio.Biophysics

Sets the value of the specificCapacitance property.

setSphere(Sphere) - Method in class org.neuroml1.model.morph.Cell.CellBody

Sets the value of the sphere property.

setSphericalLocation(Sphere) - Method in class org.neuroml1.model.network.RandomArrangement

Sets the value of the sphericalLocation property.

setSpikeTimeDep(StdpDep) - Method in class org.neuroml1.model.channel.StdpSynapse

Sets the value of the spikeTimeDep property.

setSpines(Cell.Spines) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the spines property.

setState(String) - Method in class org.neuroml1.model.channel.DeprecatedHHGate

Sets the value of the state property.

setStatus(Status) - Method in class org.neuroml1.model.channel.ChannelType

Sets the value of the status property.

setStatus(Status) - Method in class org.neuroml1.model.channel.IonConcentration

Sets the value of the status property.

setStatus(Status) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the status property.

setStatus(Status) - Method in class org.neuroml1.model.morph.Cell

Sets the value of the status property.

setStdpSyn(StdpSynapse) - Method in class org.neuroml1.model.channel.SynapseType

Sets the value of the stdpSyn property.

setSynapseDirection(SynapseDirection) - Method in class org.neuroml1.model.network.PotentialSynLoc

Sets the value of the synapseDirection property.

setSynapseType(String) - Method in class org.neuroml1.model.network.LocalSynapticProperties

Sets the value of the synapseType property.

setSynapseType(String) - Method in class org.neuroml1.model.network.SynapseProperties

Sets the value of the synapseType property.

setSynapseType(GlobalSynapticProperties.SynapseTypeElement) - Method in class org.neuroml1.model.network.GlobalSynapticProperties

Sets the value of the synapseType property.

setSynapseTypeAttributeGSP(String) - Method in class org.neuroml1.model.network.GlobalSynapticProperties

Sets the value of the synapseTypeAttributeGSP property.

setSynapseTypeAttributePSL(String) - Method in class org.neuroml1.model.network.PotentialSynLoc

Sets the value of the synapseTypeAttributePSL property.

setSynapticMechanism(String) - Method in class org.neuroml1.model.network.RandomStim

Sets the value of the synapticMechanism property.

setTableDivisions(BigInteger) - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

Sets the value of the tableDivisions property.

setTableSettings(ImplementationPrefs.TableSettings) - Method in class org.neuroml1.model.channel.ImplementationPrefs

Sets the value of the tableSettings property.

setTag(String) - Method in class org.neuroml1.model.meta.Property

Sets the value of the tag property.

setTagAttribute(String) - Method in class org.neuroml1.model.meta.Property

Sets the value of the tagAttribute property.

setTarget(String) - Method in class org.neuroml1.model.channel.DeprecatedTransition

Sets the value of the target property.

setTarget(InputTarget) - Method in class org.neuroml1.model.network.Input

Sets the value of the target property.

setTarget(Projection.TargetElement) - Method in class org.neuroml1.model.network.Projection

Sets the value of the target property.

setTargetAttribute(String) - Method in class org.neuroml1.model.network.Projection

Sets the value of the targetAttribute property.

setTau(DeprecatedRateConstantEqnChoice) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Sets the value of the tau property.

setTau(DeprecatedRateConstVoltConcDep) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Sets the value of the tau property.

setTauFac(double) - Method in class org.neuroml1.model.channel.FacDep

Sets the value of the tauFac property.

setTauLtd(double) - Method in class org.neuroml1.model.channel.StdpDep

Sets the value of the tauLtd property.

setTauLtp(double) - Method in class org.neuroml1.model.channel.StdpDep

Sets the value of the tauLtp property.

setTauRec(double) - Method in class org.neuroml1.model.channel.FacDep

Sets the value of the tauRec property.

setThreshold(double) - Method in class org.neuroml1.model.channel.IntegrateAndFire

Sets the value of the threshold property.

setThreshold(Double) - Method in class org.neuroml1.model.network.SynapseInternalProperties

Sets the value of the threshold property.

setTo(String) - Method in class org.neuroml1.model.channel.SteadyState

Sets the value of the to property.

setTo(String) - Method in class org.neuroml1.model.channel.TimeCourse

Sets the value of the to property.

setTo(String) - Method in class org.neuroml1.model.channel.Transition

Sets the value of the to property.

setTransition(DeprecatedTransition) - Method in class org.neuroml1.model.channel.DeprecatedHHGate

Sets the value of the transition property.

setTranslationStart(double) - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

Sets the value of the translationStart property.

setTRefrac(double) - Method in class org.neuroml1.model.channel.IntegrateAndFire

Sets the value of the tRefrac property.

setType(Object) - Method in class org.neuroml1.model.meta.PropertyDetail

Sets the value of the type property.

setType(String) - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

Sets the value of the type property.

setType(MechanismType) - Method in class org.neuroml1.model.bio.Mechanism

Sets the value of the type property.

setUnits(Units) - Method in class org.neuroml1.model.bio.Biophysics

Sets the value of the units property.

setUnits(Units) - Method in class org.neuroml1.model.channel.ChannelML

Sets the value of the units property.

setUnits(Units) - Method in class org.neuroml1.model.network.Inputs

Sets the value of the units property.

setUnits(Units) - Method in class org.neuroml1.model.network.Projections

Sets the value of the units property.

setUri(String) - Method in class org.neuroml1.model.meta.ModelDBReference

Sets the value of the uri property.

setUri(String) - Method in class org.neuroml1.model.meta.NeuroMorphoRef

Sets the value of the uri property.

setUri(String) - Method in class org.neuroml1.model.meta.NeuronDBReference

Sets the value of the uri property.

setValue(double) - Method in class org.neuroml1.model.bio.NamedParameter

Sets the value of the value property.

setValue(double) - Method in class org.neuroml1.model.bio.UnnamedParameter

Sets the value of the value property.

setValue(double) - Method in class org.neuroml1.model.channel.DeprecatedParameter

Sets the value of the value property.

setValue(double) - Method in class org.neuroml1.model.channel.Offset

Sets the value of the value property.

setValue(double) - Method in class org.neuroml1.model.channel.Parameter

Sets the value of the value property.

setValue(String) - Method in class org.neuroml1.model.bio.InhomogeneousValue

Sets the value of the value property.

setValue(String) - Method in class org.neuroml1.model.channel.Initialisation

Sets the value of the value property.

setValue(String) - Method in class org.neuroml1.model.channel.IonSpecies

Sets the value of the value property.

setValue(String) - Method in class org.neuroml1.model.meta.Property

Sets the value of the value property.

setValue(StatusValue) - Method in class org.neuroml1.model.meta.Status

Sets the value of the value property.

setValueAttribute(String) - Method in class org.neuroml1.model.meta.Property

Sets the value of the valueAttribute property.

setVariable(String) - Method in class org.neuroml1.model.morph.InhomogeneousParam

Sets the value of the variable property.

setVariableName(String) - Method in class org.neuroml1.model.channel.ConcDependence

Sets the value of the variableName property.

setVariableName(String) - Method in class org.neuroml1.model.channel.ConcFactor

Sets the value of the variableName property.

setVoltageConcGate(DeprecatedVoltageConcGate) - Method in class org.neuroml1.model.channel.DeprecatedTransition

Sets the value of the voltageConcGate property.

setVoltageGate(DeprecatedVoltageGate) - Method in class org.neuroml1.model.channel.DeprecatedTransition

Sets the value of the voltageGate property.

setVolume(Double) - Method in class org.neuroml1.model.morph.Spine

Sets the value of the volume property.

setVolumeUnits(VolumeUnits) - Method in class org.neuroml1.model.morph.Morphology

Sets the value of the volumeUnits property.

setVolumeUnits(VolumeUnits) - Method in class org.neuroml1.model.network.NetworkML

Sets the value of the volumeUnits property.

setVolumeUnits(VolumeUnits) - Method in class org.neuroml1.model.NeuroMLLevel3

Sets the value of the volumeUnits property.

setVReset(double) - Method in class org.neuroml1.model.channel.IntegrateAndFire

Sets the value of the vReset property.

setWeight(Double) - Method in class org.neuroml1.model.network.SynapseInternalProperties

Sets the value of the weight property.

setWidth(Double) - Method in class org.neuroml1.model.meta.RectangularBox.Size

Sets the value of the width property.

setX(double) - Method in class org.neuroml1.model.meta.Point

Sets the value of the x property.

setX(double) - Method in class org.neuroml1.model.meta.Point3D

Sets the value of the x property.

setX(Double) - Method in class org.neuroml1.model.network.GridArrangement.Spacing

Sets the value of the x property.

setX(BigInteger) - Method in class org.neuroml1.model.meta.NonSpatialGrid

Sets the value of the x property.

setY(double) - Method in class org.neuroml1.model.meta.Point

Sets the value of the y property.

setY(double) - Method in class org.neuroml1.model.meta.Point3D

Sets the value of the y property.

setY(Double) - Method in class org.neuroml1.model.network.GridArrangement.Spacing

Sets the value of the y property.

setY(BigInteger) - Method in class org.neuroml1.model.meta.NonSpatialGrid

Sets the value of the y property.

setZ(double) - Method in class org.neuroml1.model.meta.Point

Sets the value of the z property.

setZ(double) - Method in class org.neuroml1.model.meta.Point3D

Sets the value of the z property.

setZ(Double) - Method in class org.neuroml1.model.network.GridArrangement.Spacing

Sets the value of the z property.

setZ(BigInteger) - Method in class org.neuroml1.model.meta.NonSpatialGrid

Sets the value of the z property.

setZeta(DeprecatedRateConstantEqnChoice) - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

Sets the value of the zeta property.

setZeta(DeprecatedRateConstantEqnChoice) - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

Sets the value of the zeta property.

shape - Variable in class org.neuroml1.model.morph.Spine

shellThickness - Variable in class org.neuroml1.model.channel.PoolVolumeInfo

shellThicknessAttribute - Variable in class org.neuroml1.model.channel.PoolVolumeInfo

SI_UNITS - Enum constant in enum org.neuroml1.model.meta.Units

Second, volt, meter, etc.

SIGMOID - Enum constant in enum org.neuroml1.model.channel.CoreEquationType

Of the form: A / (1 + exp((v-V1/2)/B))

SIGMOID - Enum constant in enum org.neuroml1.model.channel.DeprecatedCoreEquationType

Of the form: A / (1 + exp(k * (v-d)))

SIGNALLING_SUBSTANCE - Enum constant in enum org.neuroml1.model.channel.DeprecatedIonRole

Ion/substance is involved in internal signalling in the cell and the mechanism can alter its concentration, e.g.

site - Variable in class org.neuroml1.model.network.InputSites

sitePattern - Variable in class org.neuroml1.model.network.InputTarget

sites - Variable in class org.neuroml1.model.network.InputTarget

size - Variable in class org.neuroml1.model.meta.RectangularBox

size - Variable in class org.neuroml1.model.network.Connections

size - Variable in class org.neuroml1.model.network.InputSites

size - Variable in class org.neuroml1.model.network.Instances

Size() - Constructor for class org.neuroml1.model.meta.RectangularBox.Size

source - Variable in class org.neuroml1.model.channel.DeprecatedTransition

source - Variable in class org.neuroml1.model.network.Projection

sourceAttribute - Variable in class org.neuroml1.model.network.Projection

SourceElement() - Constructor for class org.neuroml1.model.network.Projection.SourceElement

SourceElement(String) - Constructor for class org.neuroml1.model.network.Projection.SourceElement

spacing - Variable in class org.neuroml1.model.network.GridArrangement

Spacing() - Constructor for class org.neuroml1.model.network.GridArrangement.Spacing

specAxialResistance - Variable in class org.neuroml1.model.bio.Biophysics

SpecAxialResistance - Class in org.neuroml1.model.bio

Specific axial resistance of a group of sections

SpecAxialResistance() - Constructor for class org.neuroml1.model.bio.SpecAxialResistance

specCapacitance - Variable in class org.neuroml1.model.bio.Biophysics

SpecCapacitance - Class in org.neuroml1.model.bio

Capacitance per unit area of a group of sections

SpecCapacitance() - Constructor for class org.neuroml1.model.bio.SpecCapacitance

species - Variable in class org.neuroml1.model.channel.Block

specificAxialResistance - Variable in class org.neuroml1.model.bio.Biophysics

specificCapacitance - Variable in class org.neuroml1.model.bio.Biophysics

sphere - Variable in class org.neuroml1.model.morph.Cell.CellBody

sphere - Variable in class org.neuroml1.model.morph.Feature

Sphere - Class in org.neuroml1.model.meta

A spherical structure such as a cell body or cell.

Sphere() - Constructor for class org.neuroml1.model.meta.Sphere

sphericalLocation - Variable in class org.neuroml1.model.network.RandomArrangement

spikeTimeDep - Variable in class org.neuroml1.model.channel.StdpSynapse

spine - Variable in class org.neuroml1.model.morph.Cell.Spines

Spine - Class in org.neuroml1.model.morph

A spine with location, shape, and direction.

Spine() - Constructor for class org.neuroml1.model.morph.Spine

spines - Variable in class org.neuroml1.model.morph.Cell

Spines() - Constructor for class org.neuroml1.model.morph.Cell.Spines

SpineShape - Enum in org.neuroml1.model.morph

Java class for SpineShape.

STABLE - Enum constant in enum org.neuroml1.model.meta.StatusValue

File can be used with reasonable confidence

state - Variable in class org.neuroml1.model.channel.DeprecatedHHGate

state - Variable in class org.neuroml1.model.channel.DeprecatedKSGate

state - Variable in class org.neuroml1.model.channel.Gate

State() - Constructor for class org.neuroml1.model.channel.Gate.State

status - Variable in class org.neuroml1.model.channel.ChannelType

status - Variable in class org.neuroml1.model.channel.IonConcentration

status - Variable in class org.neuroml1.model.channel.SynapseType

status - Variable in class org.neuroml1.model.morph.Cell

Status - Class in org.neuroml1.model.meta

Status element giving the stability state of files and some extra comments.

Status() - Constructor for class org.neuroml1.model.meta.Status

StatusValue - Enum in org.neuroml1.model.meta

Java class for StatusValue.

StdpDep - Class in org.neuroml1.model.channel

A synaptic mechanism implementing basic Spike Timing Dependent Plasticity based on Song and Abbott, 2001.

StdpDep() - Constructor for class org.neuroml1.model.channel.StdpDep

stdpSyn - Variable in class org.neuroml1.model.channel.SynapseType

StdpSynapse - Class in org.neuroml1.model.channel

A synaptic mechanism implementing basic Spike Timing Dependent Plasticity based on Song and Abbott, 2001 Extends MultiDecaySynapse

StdpSynapse() - Constructor for class org.neuroml1.model.channel.StdpSynapse

steadyState - Variable in class org.neuroml1.model.channel.GatingComplex

SteadyState - Class in org.neuroml1.model.channel

Steady state value of the transition between states in a GatingComplex

SteadyState() - Constructor for class org.neuroml1.model.channel.SteadyState

STUBBY - Enum constant in enum org.neuroml1.model.morph.SpineShape

synapseDirection - Variable in class org.neuroml1.model.network.PotentialSynLoc

SynapseDirection - Enum in org.neuroml1.model.network

Java class for SynapseDirection.

SynapseInternalProperties - Class in org.neuroml1.model.network

Variables specifying a single synapse or default values for a set of connections

SynapseInternalProperties() - Constructor for class org.neuroml1.model.network.SynapseInternalProperties

SynapseProperties - Class in org.neuroml1.model.network

Pre v1.7.1 format for global synapse properties.

SynapseProperties() - Constructor for class org.neuroml1.model.network.SynapseProperties

synapseProps - Variable in class org.neuroml1.model.network.Projection

synapseType - Variable in class org.neuroml1.model.channel.ChannelML

synapseType - Variable in class org.neuroml1.model.network.GlobalSynapticProperties

synapseType - Variable in class org.neuroml1.model.network.LocalSynapticProperties

synapseType - Variable in class org.neuroml1.model.network.SynapseProperties

SynapseType - Class in org.neuroml1.model.channel

Definition of a synaptic mechanism

SynapseType() - Constructor for class org.neuroml1.model.channel.SynapseType

synapseTypeAttributeGSP - Variable in class org.neuroml1.model.network.GlobalSynapticProperties

synapseTypeAttributePSL - Variable in class org.neuroml1.model.network.PotentialSynLoc

SynapseTypeElement() - Constructor for class org.neuroml1.model.network.GlobalSynapticProperties.SynapseTypeElement

SynapseTypeElement(String) - Constructor for class org.neuroml1.model.network.GlobalSynapticProperties.SynapseTypeElement

SynapticLocation - Class in org.neuroml1.model.network

Java class for SynapticLocation complex type.

SynapticLocation() - Constructor for class org.neuroml1.model.network.SynapticLocation

synapticMechanism - Variable in class org.neuroml1.model.network.RandomStim

T

tableDivisions - Variable in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

tableSettings - Variable in class org.neuroml1.model.channel.ImplementationPrefs

TableSettings() - Constructor for class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

tag - Variable in class org.neuroml1.model.meta.Property

tagAttribute - Variable in class org.neuroml1.model.meta.Property

target - Variable in class org.neuroml1.model.channel.DeprecatedTransition

target - Variable in class org.neuroml1.model.network.Input

target - Variable in class org.neuroml1.model.network.Projection

targetAttribute - Variable in class org.neuroml1.model.network.Projection

TargetElement() - Constructor for class org.neuroml1.model.network.Projection.TargetElement

TargetElement(String) - Constructor for class org.neuroml1.model.network.Projection.TargetElement

tau - Variable in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

tau - Variable in class org.neuroml1.model.channel.DeprecatedVoltageGate

tauFac - Variable in class org.neuroml1.model.channel.FacDep

tauLtd - Variable in class org.neuroml1.model.channel.StdpDep

tauLtp - Variable in class org.neuroml1.model.channel.StdpDep

tauRec - Variable in class org.neuroml1.model.channel.FacDep

TEMP_NAMESPACE - Static variable in class org.neuroml1.model.util.NeuroMLNamespacePrefixMapper

THIN - Enum constant in enum org.neuroml1.model.morph.SpineShape

threshold - Variable in class org.neuroml1.model.channel.IntegrateAndFire

threshold - Variable in class org.neuroml1.model.network.SynapseInternalProperties

timeCourse - Variable in class org.neuroml1.model.channel.GatingComplex

TimeCourse - Class in org.neuroml1.model.channel

Time course of the transition between states in a GatingComplex

TimeCourse() - Constructor for class org.neuroml1.model.channel.TimeCourse

to - Variable in class org.neuroml1.model.channel.SteadyState

to - Variable in class org.neuroml1.model.channel.TimeCourse

to - Variable in class org.neuroml1.model.channel.Transition

toString() - Method in class org.neuroml1.model.bio.Biophysics

toString() - Method in class org.neuroml1.model.bio.InhomogeneousValue

toString() - Method in class org.neuroml1.model.bio.InitialMembPotential

toString() - Method in class org.neuroml1.model.bio.IonProperties

toString() - Method in class org.neuroml1.model.bio.Mechanism

toString() - Method in class org.neuroml1.model.bio.NamedParameter

toString() - Method in class org.neuroml1.model.bio.SpecAxialResistance

toString() - Method in class org.neuroml1.model.bio.SpecCapacitance

toString() - Method in class org.neuroml1.model.bio.UnnamedParameter

toString() - Method in class org.neuroml1.model.bio.VariableNamedParameter

toString() - Method in class org.neuroml1.model.bio.VariableParameter

toString() - Method in class org.neuroml1.model.channel.Block

toString() - Method in class org.neuroml1.model.channel.BlockingSynapse

toString() - Method in class org.neuroml1.model.channel.ChannelML

toString() - Method in class org.neuroml1.model.channel.ChannelType

toString() - Method in class org.neuroml1.model.channel.ClosedState

toString() - Method in class org.neuroml1.model.channel.ConcDependence

toString() - Method in class org.neuroml1.model.channel.ConcFactor

toString() - Method in class org.neuroml1.model.channel.CurrentVoltageRelation

toString() - Method in class org.neuroml1.model.channel.DecayingPoolModel

toString() - Method in class org.neuroml1.model.channel.DeprecatedAkdEquation

toString() - Method in class org.neuroml1.model.channel.DeprecatedGenericEquation

toString() - Method in class org.neuroml1.model.channel.DeprecatedHHGate

toString() - Method in class org.neuroml1.model.channel.DeprecatedIon

toString() - Method in class org.neuroml1.model.channel.DeprecatedKSGate

toString() - Method in class org.neuroml1.model.channel.DeprecatedKSState

toString() - Method in class org.neuroml1.model.channel.DeprecatedOhmic.Conductance

toString() - Method in class org.neuroml1.model.channel.DeprecatedOhmic

toString() - Method in class org.neuroml1.model.channel.DeprecatedParameter

toString() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

toString() - Method in class org.neuroml1.model.channel.DeprecatedRateConstantEqnChoice

toString() - Method in class org.neuroml1.model.channel.DeprecatedRateConstVoltConcDep

toString() - Method in class org.neuroml1.model.channel.DeprecatedTransition

toString() - Method in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

toString() - Method in class org.neuroml1.model.channel.DeprecatedVoltageGate

toString() - Method in class org.neuroml1.model.channel.DoubleExponentialSynapse

toString() - Method in class org.neuroml1.model.channel.ElectricalSynapse

toString() - Method in class org.neuroml1.model.channel.FacDep

toString() - Method in class org.neuroml1.model.channel.FacDepSynapse

toString() - Method in class org.neuroml1.model.channel.FixedPoolInfo

toString() - Method in class org.neuroml1.model.channel.Gate.State

toString() - Method in class org.neuroml1.model.channel.Gate

toString() - Method in class org.neuroml1.model.channel.GatingComplex

toString() - Method in class org.neuroml1.model.channel.ImplementationPrefs.TableSettings

toString() - Method in class org.neuroml1.model.channel.ImplementationPrefs

toString() - Method in class org.neuroml1.model.channel.Initialisation

toString() - Method in class org.neuroml1.model.channel.IntegrateAndFire

toString() - Method in class org.neuroml1.model.channel.IonConcentration

toString() - Method in class org.neuroml1.model.channel.IonSpecies

toString() - Method in class org.neuroml1.model.channel.MultiDecaySynapse

toString() - Method in class org.neuroml1.model.channel.Offset

toString() - Method in class org.neuroml1.model.channel.OpenState

toString() - Method in class org.neuroml1.model.channel.Parameter

toString() - Method in class org.neuroml1.model.channel.Parameters

toString() - Method in class org.neuroml1.model.channel.PoolVolumeInfo

toString() - Method in class org.neuroml1.model.channel.Q10Settings

toString() - Method in class org.neuroml1.model.channel.RateAdjustments

toString() - Method in class org.neuroml1.model.channel.StdpDep

toString() - Method in class org.neuroml1.model.channel.StdpSynapse

toString() - Method in class org.neuroml1.model.channel.SteadyState

toString() - Method in class org.neuroml1.model.channel.SynapseType

toString() - Method in class org.neuroml1.model.channel.TimeCourse

toString() - Method in class org.neuroml1.model.channel.Transition

toString() - Method in class org.neuroml1.model.Level3Biophysics

toString() - Method in class org.neuroml1.model.Level3Cell

toString() - Method in class org.neuroml1.model.Level3Cells

toString() - Method in class org.neuroml1.model.meta.Annotation

toString() - Method in class org.neuroml1.model.meta.Authors

toString() - Method in class org.neuroml1.model.meta.GroupDetail

toString() - Method in class org.neuroml1.model.meta.Manifold

toString() - Method in class org.neuroml1.model.meta.ModelDBReference

toString() - Method in class org.neuroml1.model.meta.NeuroMorphoRef

toString() - Method in class org.neuroml1.model.meta.NeuronDBReference

toString() - Method in class org.neuroml1.model.meta.NonSpatialGrid

toString() - Method in class org.neuroml1.model.meta.Person

toString() - Method in class org.neuroml1.model.meta.Point

toString() - Method in class org.neuroml1.model.meta.Point3D

toString() - Method in class org.neuroml1.model.meta.Points

toString() - Method in class org.neuroml1.model.meta.Polygon

toString() - Method in class org.neuroml1.model.meta.Polyhedron.Polygons

toString() - Method in class org.neuroml1.model.meta.Polyhedron

toString() - Method in class org.neuroml1.model.meta.Properties

toString() - Method in class org.neuroml1.model.meta.Property

toString() - Method in class org.neuroml1.model.meta.PropertyDetail

toString() - Method in class org.neuroml1.model.meta.Publication

toString() - Method in class org.neuroml1.model.meta.RectangularBox.Size

toString() - Method in class org.neuroml1.model.meta.RectangularBox

toString() - Method in class org.neuroml1.model.meta.Sphere

toString() - Method in class org.neuroml1.model.meta.Status

toString() - Method in class org.neuroml1.model.morph.Cable

toString() - Method in class org.neuroml1.model.morph.CableGroup.Cable

toString() - Method in class org.neuroml1.model.morph.CableGroup

toString() - Method in class org.neuroml1.model.morph.Cell.Cables

toString() - Method in class org.neuroml1.model.morph.Cell.CellBody

toString() - Method in class org.neuroml1.model.morph.Cell.Segments

toString() - Method in class org.neuroml1.model.morph.Cell.Spines

toString() - Method in class org.neuroml1.model.morph.Cell

toString() - Method in class org.neuroml1.model.morph.Cells

toString() - Method in class org.neuroml1.model.morph.Feature

toString() - Method in class org.neuroml1.model.morph.FreePoints

toString() - Method in class org.neuroml1.model.morph.InhomogeneousParam.Distal

toString() - Method in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

toString() - Method in class org.neuroml1.model.morph.InhomogeneousParam

toString() - Method in class org.neuroml1.model.morph.Morphology.Features

toString() - Method in class org.neuroml1.model.morph.Morphology.GroupDetails

toString() - Method in class org.neuroml1.model.morph.Morphology.PropertyDetails

toString() - Method in class org.neuroml1.model.morph.Morphology

toString() - Method in class org.neuroml1.model.morph.Path

toString() - Method in class org.neuroml1.model.morph.Segment

toString() - Method in class org.neuroml1.model.morph.Spine

toString() - Method in class org.neuroml1.model.network.CellInstance

toString() - Method in class org.neuroml1.model.network.Connection

toString() - Method in class org.neuroml1.model.network.Connections

toString() - Method in class org.neuroml1.model.network.ConnectivityPattern.AllToAll

toString() - Method in class org.neuroml1.model.network.ConnectivityPattern.FixedProbability

toString() - Method in class org.neuroml1.model.network.ConnectivityPattern

toString() - Method in class org.neuroml1.model.network.GlobalSynapticProperties

toString() - Method in class org.neuroml1.model.network.GridArrangement.Spacing

toString() - Method in class org.neuroml1.model.network.GridArrangement

toString() - Method in class org.neuroml1.model.network.Input

toString() - Method in class org.neuroml1.model.network.Inputs

toString() - Method in class org.neuroml1.model.network.InputSite

toString() - Method in class org.neuroml1.model.network.InputSitePattern.AllCells

toString() - Method in class org.neuroml1.model.network.InputSitePattern.PercentageCells

toString() - Method in class org.neuroml1.model.network.InputSitePattern

toString() - Method in class org.neuroml1.model.network.InputSites

toString() - Method in class org.neuroml1.model.network.InputTarget

toString() - Method in class org.neuroml1.model.network.Instances

toString() - Method in class org.neuroml1.model.network.Level3Connectivity

toString() - Method in class org.neuroml1.model.network.LocalSynapticProperties

toString() - Method in class org.neuroml1.model.network.NetworkML

toString() - Method in class org.neuroml1.model.network.PerCellConnection

toString() - Method in class org.neuroml1.model.network.Population

toString() - Method in class org.neuroml1.model.network.PopulationLocation

toString() - Method in class org.neuroml1.model.network.Populations

toString() - Method in class org.neuroml1.model.network.PotentialSynapticLocation

toString() - Method in class org.neuroml1.model.network.PotentialSynLoc

toString() - Method in class org.neuroml1.model.network.Projection

toString() - Method in class org.neuroml1.model.network.Projections

toString() - Method in class org.neuroml1.model.network.PulseInput

toString() - Method in class org.neuroml1.model.network.RandomArrangement

toString() - Method in class org.neuroml1.model.network.RandomStim

toString() - Method in class org.neuroml1.model.network.RandomStimInstance

toString() - Method in class org.neuroml1.model.network.SynapseInternalProperties

toString() - Method in class org.neuroml1.model.network.SynapseProperties

toString() - Method in class org.neuroml1.model.network.SynapticLocation

toString() - Method in class org.neuroml1.model.NeuroMLLevel3

transition - Variable in class org.neuroml1.model.channel.DeprecatedHHGate

transition - Variable in class org.neuroml1.model.channel.DeprecatedKSGate

transition - Variable in class org.neuroml1.model.channel.GatingComplex

Transition - Class in org.neuroml1.model.channel

Transition between states in a GatingComplex

Transition() - Constructor for class org.neuroml1.model.channel.Transition

translationStart - Variable in class org.neuroml1.model.morph.InhomogeneousParam.Proximal

tRefrac - Variable in class org.neuroml1.model.channel.IntegrateAndFire

type - Variable in class org.neuroml1.model.bio.Mechanism

type - Variable in class org.neuroml1.model.channel.DeprecatedRateConstantEqn

type - Variable in class org.neuroml1.model.meta.PropertyDetail

U

units - Variable in class org.neuroml1.model.bio.Biophysics

units - Variable in class org.neuroml1.model.channel.ChannelML

units - Variable in class org.neuroml1.model.network.Inputs

units - Variable in class org.neuroml1.model.network.Projections

Units - Enum in org.neuroml1.model.meta

Java class for Units.

unmarshaller - Variable in class org.neuroml1.model.util.NeuroMLConverter

UnnamedParameter - Class in org.neuroml1.model.bio

Definition of a value for a quantity and the associated groups of cables which have this value.

UnnamedParameter() - Constructor for class org.neuroml1.model.bio.UnnamedParameter

uri - Variable in class org.neuroml1.model.meta.ModelDBReference

uri - Variable in class org.neuroml1.model.meta.NeuroMorphoRef

uri - Variable in class org.neuroml1.model.meta.NeuronDBReference

V

validateWithTests(File) - Method in class org.neuroml1.model.util.NeuroML1Validator

value - Variable in class org.neuroml1.model.bio.InhomogeneousValue

value - Variable in class org.neuroml1.model.bio.NamedParameter

value - Variable in class org.neuroml1.model.bio.UnnamedParameter

value - Variable in class org.neuroml1.model.channel.DeprecatedParameter

value - Variable in class org.neuroml1.model.channel.Initialisation

value - Variable in class org.neuroml1.model.channel.IonSpecies

value - Variable in class org.neuroml1.model.channel.Offset

value - Variable in class org.neuroml1.model.channel.Parameter

value - Variable in class org.neuroml1.model.meta.Property

value - Variable in class org.neuroml1.model.meta.Status

value() - Method in enum org.neuroml1.model.bio.MechanismType

value() - Method in enum org.neuroml1.model.channel.ConductanceLaw

value() - Method in enum org.neuroml1.model.channel.CoreEquationType

value() - Method in enum org.neuroml1.model.channel.DeprecatedCoreEquationType

value() - Method in enum org.neuroml1.model.channel.DeprecatedIonRole

value() - Method in enum org.neuroml1.model.meta.LengthUnits

value() - Method in enum org.neuroml1.model.meta.StatusValue

value() - Method in enum org.neuroml1.model.meta.Units

value() - Method in enum org.neuroml1.model.meta.VolumeUnits

value() - Method in enum org.neuroml1.model.meta.YesNo

value() - Method in enum org.neuroml1.model.morph.SpineShape

value() - Method in enum org.neuroml1.model.network.SynapseDirection

valueAttribute - Variable in class org.neuroml1.model.meta.Property

valueOf(String) - Static method in enum org.neuroml1.model.bio.MechanismType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.channel.ConductanceLaw

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.channel.CoreEquationType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.channel.DeprecatedCoreEquationType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.channel.DeprecatedIonRole

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.meta.LengthUnits

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.meta.StatusValue

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.meta.Units

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.meta.VolumeUnits

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.meta.YesNo

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.morph.SpineShape

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml1.model.network.SynapseDirection

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.neuroml1.model.bio.MechanismType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.channel.ConductanceLaw

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.channel.CoreEquationType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.channel.DeprecatedCoreEquationType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.channel.DeprecatedIonRole

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.meta.LengthUnits

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.meta.StatusValue

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.meta.Units

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.meta.VolumeUnits

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.meta.YesNo

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.morph.SpineShape

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml1.model.network.SynapseDirection

Returns an array containing the constants of this enum type, in the order they are declared.

variable - Variable in class org.neuroml1.model.morph.InhomogeneousParam

variableName - Variable in class org.neuroml1.model.channel.ConcDependence

variableName - Variable in class org.neuroml1.model.channel.ConcFactor

VariableNamedParameter - Class in org.neuroml1.model.bio

Definition of a value for a quantity which varies over a given group of cables

VariableNamedParameter() - Constructor for class org.neuroml1.model.bio.VariableNamedParameter

variableParameter - Variable in class org.neuroml1.model.bio.InitialMembPotential

variableParameter - Variable in class org.neuroml1.model.bio.Mechanism

variableParameter - Variable in class org.neuroml1.model.bio.SpecAxialResistance

variableParameter - Variable in class org.neuroml1.model.bio.SpecCapacitance

VariableParameter - Class in org.neuroml1.model.bio

Definition of a value for a quantity which varies over a given group of cables

VariableParameter() - Constructor for class org.neuroml1.model.bio.VariableParameter

variableParameterAlt - Variable in class org.neuroml1.model.bio.Mechanism

variableParameterAlt - Variable in class org.neuroml1.model.bio.SpecAxialResistance

variableParameterAlt - Variable in class org.neuroml1.model.bio.SpecCapacitance

voltageConcGate - Variable in class org.neuroml1.model.channel.DeprecatedTransition

voltageGate - Variable in class org.neuroml1.model.channel.DeprecatedTransition

volume - Variable in class org.neuroml1.model.morph.Spine

volumeUnits - Variable in class org.neuroml1.model.morph.Morphology

volumeUnits - Variable in class org.neuroml1.model.network.NetworkML

volumeUnits - Variable in class org.neuroml1.model.NeuroMLLevel3

VolumeUnits - Enum in org.neuroml1.model.meta

Java class for VolumeUnits.

vReset - Variable in class org.neuroml1.model.channel.IntegrateAndFire

W

weight - Variable in class org.neuroml1.model.network.SynapseInternalProperties

width - Variable in class org.neuroml1.model.meta.RectangularBox.Size

X

x - Variable in class org.neuroml1.model.meta.NonSpatialGrid

x - Variable in class org.neuroml1.model.meta.Point

x - Variable in class org.neuroml1.model.meta.Point3D

x - Variable in class org.neuroml1.model.network.GridArrangement.Spacing

xmlToChannel(String) - Method in class org.neuroml1.model.util.NeuroMLConverter

xmlToMorphology(String) - Method in class org.neuroml1.model.util.NeuroMLConverter

xmlToNetwork(String) - Method in class org.neuroml1.model.util.NeuroMLConverter

Y

y - Variable in class org.neuroml1.model.meta.NonSpatialGrid

y - Variable in class org.neuroml1.model.meta.Point

y - Variable in class org.neuroml1.model.meta.Point3D

y - Variable in class org.neuroml1.model.network.GridArrangement.Spacing

YES - Enum constant in enum org.neuroml1.model.meta.YesNo

YesNo - Enum in org.neuroml1.model.meta

Java class for YesNo.

Z

z - Variable in class org.neuroml1.model.meta.NonSpatialGrid

z - Variable in class org.neuroml1.model.meta.Point

z - Variable in class org.neuroml1.model.meta.Point3D

z - Variable in class org.neuroml1.model.network.GridArrangement.Spacing

zeta - Variable in class org.neuroml1.model.channel.DeprecatedVoltageConcGate

zeta - Variable in class org.neuroml1.model.channel.DeprecatedVoltageGate

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