Package org.neuroml1.model.bio

Class Biophysics

java.lang.Object
org.neuroml1.model.bio.Biophysics
All Implemented Interfaces:
Cloneable, org.jvnet.jaxb2_commons.lang.CopyTo2, org.jvnet.jaxb2_commons.lang.Equals2, org.jvnet.jaxb2_commons.lang.HashCode2, org.jvnet.jaxb2_commons.lang.ToString2
Direct Known Subclasses:
Level3Biophysics
public class Biophysics extends Object implements Cloneable, org.jvnet.jaxb2_commons.lang.CopyTo2, org.jvnet.jaxb2_commons.lang.Equals2, org.jvnet.jaxb2_commons.lang.HashCode2, org.jvnet.jaxb2_commons.lang.ToString2
Description of biophysical properties of a cell.

Java class for Biophysics complex type.

The following schema fragment specifies the expected content contained within this class. 

 <complexType name="Biophysics">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <element name="mechanism" type="{http://morphml.org/biophysics/schema}Mechanism" maxOccurs="unbounded"/>
         <choice>
           <element name="specificCapacitance" type="{http://morphml.org/biophysics/schema}SpecCapacitance"/>
           <element name="spec_capacitance" type="{http://morphml.org/biophysics/schema}SpecCapacitance"/>
         </choice>
         <choice>
           <element name="specificAxialResistance" type="{http://morphml.org/biophysics/schema}SpecAxialResistance"/>
           <element name="spec_axial_resistance" type="{http://morphml.org/biophysics/schema}SpecAxialResistance"/>
         </choice>
         <choice>
           <element name="initialMembPotential" type="{http://morphml.org/biophysics/schema}InitialMembPotential" minOccurs="0"/>
           <element name="init_memb_potential" type="{http://morphml.org/biophysics/schema}InitialMembPotential" minOccurs="0"/>
         </choice>
         <choice>
           <element name="ionProperties" type="{http://morphml.org/biophysics/schema}IonProperties" minOccurs="0"/>
           <element name="ion_props" type="{http://morphml.org/biophysics/schema}IonProperties" maxOccurs="unbounded" minOccurs="0"/>
         </choice>
       </sequence>
       <attribute name="units" use="required" type="{http://morphml.org/metadata/schema}Units" />
     </restriction>
   </complexContent>
 </complexType>

  • Field Details

  • Constructor Details

    • Biophysics

      public Biophysics()

  • Method Details

    • getMechanism

      public List<Mechanism> getMechanism()
      Gets the value of the mechanism property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the mechanism property.

      For example, to add a new item, do as follows: 

          getMechanism().add(newItem);

      Objects of the following type(s) are allowed in the list Mechanism

    • getSpecificCapacitance

      public SpecCapacitance getSpecificCapacitance()
      Gets the value of the specificCapacitance property.
      Returns:
      possible object is SpecCapacitance

    • setSpecificCapacitance

      public void setSpecificCapacitance(SpecCapacitance value)
      Sets the value of the specificCapacitance property.
      Parameters:
      value - allowed object is SpecCapacitance

    • getSpecCapacitance

      public SpecCapacitance getSpecCapacitance()
      Gets the value of the specCapacitance property.
      Returns:
      possible object is SpecCapacitance

    • setSpecCapacitance

      public void setSpecCapacitance(SpecCapacitance value)
      Sets the value of the specCapacitance property.
      Parameters:
      value - allowed object is SpecCapacitance

    • getSpecificAxialResistance

      public SpecAxialResistance getSpecificAxialResistance()
      Gets the value of the specificAxialResistance property.
      Returns:
      possible object is SpecAxialResistance

    • setSpecificAxialResistance

      public void setSpecificAxialResistance(SpecAxialResistance value)
      Sets the value of the specificAxialResistance property.
      Parameters:
      value - allowed object is SpecAxialResistance

    • getSpecAxialResistance

      public SpecAxialResistance getSpecAxialResistance()
      Gets the value of the specAxialResistance property.
      Returns:
      possible object is SpecAxialResistance

    • setSpecAxialResistance

      public void setSpecAxialResistance(SpecAxialResistance value)
      Sets the value of the specAxialResistance property.
      Parameters:
      value - allowed object is SpecAxialResistance

    • getInitialMembPotential

      public InitialMembPotential getInitialMembPotential()
      Gets the value of the initialMembPotential property.
      Returns:
      possible object is InitialMembPotential

    • setInitialMembPotential

      public void setInitialMembPotential(InitialMembPotential value)
      Sets the value of the initialMembPotential property.
      Parameters:
      value - allowed object is InitialMembPotential

    • getInitMembPotential

      public InitialMembPotential getInitMembPotential()
      Gets the value of the initMembPotential property.
      Returns:
      possible object is InitialMembPotential

    • setInitMembPotential

      public void setInitMembPotential(InitialMembPotential value)
      Sets the value of the initMembPotential property.
      Parameters:
      value - allowed object is InitialMembPotential

    • getIonProperties

      public IonProperties getIonProperties()
      Gets the value of the ionProperties property.
      Returns:
      possible object is IonProperties

    • setIonProperties

      public void setIonProperties(IonProperties value)
      Sets the value of the ionProperties property.
      Parameters:
      value - allowed object is IonProperties

    • getIonProps

      public List<IonProperties> getIonProps()
      Gets the value of the ionProps property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the ionProps property.

      For example, to add a new item, do as follows: 

          getIonProps().add(newItem);

      Objects of the following type(s) are allowed in the list IonProperties

    • getUnits

      public Units getUnits()
      Gets the value of the units property.
      Returns:
      possible object is Units

    • setUnits

      public void setUnits(Units value)
      Sets the value of the units property.
      Parameters:
      value - allowed object is Units

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • append

      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, StringBuilder buffer, org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      Specified by:
      append in interface org.jvnet.jaxb2_commons.lang.ToString2

    • appendFields

      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, StringBuilder buffer, org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      Specified by:
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2

    • equals

      public boolean equals(org.jvnet.jaxb2_commons.locator.ObjectLocator thisLocator, org.jvnet.jaxb2_commons.locator.ObjectLocator thatLocator, Object object, org.jvnet.jaxb2_commons.lang.EqualsStrategy2 strategy)
      Specified by:
      equals in interface org.jvnet.jaxb2_commons.lang.Equals2

    • equals

      public boolean equals(Object object)
      Overrides:
      equals in class Object

    • hashCode

      public int hashCode(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, org.jvnet.jaxb2_commons.lang.HashCodeStrategy2 strategy)
      Specified by:
      hashCode in interface org.jvnet.jaxb2_commons.lang.HashCode2

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • clone

      public Object clone()
      Overrides:
      clone in class Object

    • copyTo

      public Object copyTo(Object target)
      Specified by:
      copyTo in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • copyTo

      public Object copyTo(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, Object target, org.jvnet.jaxb2_commons.lang.CopyStrategy2 strategy)
      Specified by:
      copyTo in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • createNewInstance

      public Object createNewInstance()
      Specified by:
      createNewInstance in interface org.jvnet.jaxb2_commons.lang.CopyTo2