Package org.neuroml1.model.channel

Class ChannelML

java.lang.Object
org.neuroml1.model.channel.ChannelML
All Implemented Interfaces:
Cloneable, org.jvnet.jaxb2_commons.lang.CopyTo2, org.jvnet.jaxb2_commons.lang.Equals2, org.jvnet.jaxb2_commons.lang.HashCode2, org.jvnet.jaxb2_commons.lang.ToString2
public class ChannelML extends Object implements Cloneable, org.jvnet.jaxb2_commons.lang.CopyTo2, org.jvnet.jaxb2_commons.lang.Equals2, org.jvnet.jaxb2_commons.lang.HashCode2, org.jvnet.jaxb2_commons.lang.ToString2
Root element containing the ions used in the mechanism, the unit system of the file (as attribute), and information on channels and/or ion concentration dynamics. Normally only the ion element and one of channel_type, synapse_type or ion_concentration should be present.

Java class for ChannelML complex type.

The following schema fragment specifies the expected content contained within this class. 

 <complexType name="ChannelML">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <group ref="{http://morphml.org/metadata/schema}metadata"/>
         <element name="ion" type="{http://morphml.org/channelml/schema}Deprecated_Ion" maxOccurs="unbounded" minOccurs="0"/>
         <element name="channel_type" type="{http://morphml.org/channelml/schema}ChannelType" maxOccurs="unbounded" minOccurs="0"/>
         <element name="synapse_type" type="{http://morphml.org/channelml/schema}SynapseType" maxOccurs="unbounded" minOccurs="0"/>
         <element name="ion_concentration" type="{http://morphml.org/channelml/schema}IonConcentration" maxOccurs="unbounded" minOccurs="0"/>
       </sequence>
       <attribute name="units" use="required" type="{http://morphml.org/metadata/schema}Units" />
     </restriction>
   </complexContent>
 </complexType>

  • Field Details

  • Constructor Details

    • ChannelML

      public ChannelML()

  • Method Details

    • getNotes

      public String getNotes()
      Gets the value of the notes property.
      Returns:
      possible object is String

    • setNotes

      public void setNotes(String value)
      Sets the value of the notes property.
      Parameters:
      value - allowed object is String

    • getProperties

      public Properties getProperties()
      Gets the value of the properties property.
      Returns:
      possible object is Properties

    • setProperties

      public void setProperties(Properties value)
      Sets the value of the properties property.
      Parameters:
      value - allowed object is Properties

    • getAnnotation

      public Annotation getAnnotation()
      Gets the value of the annotation property.
      Returns:
      possible object is Annotation

    • setAnnotation

      public void setAnnotation(Annotation value)
      Sets the value of the annotation property.
      Parameters:
      value - allowed object is Annotation

    • getGroup

      public List<String> getGroup()
      Gets the value of the group property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the group property.

      For example, to add a new item, do as follows: 

          getGroup().add(newItem);

      Objects of the following type(s) are allowed in the list String

    • getIon

      public List<DeprecatedIon> getIon()
      Gets the value of the ion property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the ion property.

      For example, to add a new item, do as follows: 

          getIon().add(newItem);

      Objects of the following type(s) are allowed in the list DeprecatedIon

    • getChannelType

      public List<ChannelType> getChannelType()
      Gets the value of the channelType property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the channelType property.

      For example, to add a new item, do as follows: 

          getChannelType().add(newItem);

      Objects of the following type(s) are allowed in the list ChannelType

    • getSynapseType

      public List<SynapseType> getSynapseType()
      Gets the value of the synapseType property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the synapseType property.

      For example, to add a new item, do as follows: 

          getSynapseType().add(newItem);

      Objects of the following type(s) are allowed in the list SynapseType

    • getIonConcentration

      public List<IonConcentration> getIonConcentration()
      Gets the value of the ionConcentration property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the ionConcentration property.

      For example, to add a new item, do as follows: 

          getIonConcentration().add(newItem);

      Objects of the following type(s) are allowed in the list IonConcentration

    • getUnits

      public Units getUnits()
      Gets the value of the units property.
      Returns:
      possible object is Units

    • setUnits

      public void setUnits(Units value)
      Sets the value of the units property.
      Parameters:
      value - allowed object is Units

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • append

      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, StringBuilder buffer, org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      Specified by:
      append in interface org.jvnet.jaxb2_commons.lang.ToString2

    • appendFields

      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, StringBuilder buffer, org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      Specified by:
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2

    • equals

      public boolean equals(org.jvnet.jaxb2_commons.locator.ObjectLocator thisLocator, org.jvnet.jaxb2_commons.locator.ObjectLocator thatLocator, Object object, org.jvnet.jaxb2_commons.lang.EqualsStrategy2 strategy)
      Specified by:
      equals in interface org.jvnet.jaxb2_commons.lang.Equals2

    • equals

      public boolean equals(Object object)
      Overrides:
      equals in class Object

    • hashCode

      public int hashCode(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, org.jvnet.jaxb2_commons.lang.HashCodeStrategy2 strategy)
      Specified by:
      hashCode in interface org.jvnet.jaxb2_commons.lang.HashCode2

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • clone

      public Object clone()
      Overrides:
      clone in class Object

    • copyTo

      public Object copyTo(Object target)
      Specified by:
      copyTo in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • copyTo

      public Object copyTo(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, Object target, org.jvnet.jaxb2_commons.lang.CopyStrategy2 strategy)
      Specified by:
      copyTo in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • createNewInstance

      public Object createNewInstance()
      Specified by:
      createNewInstance in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • getChannelTypeByName

      public ChannelType getChannelTypeByName(String name)
      Gets a channel type by name, or null if no such channel exists.