Package org.neuroml1.model

Class NeuroMLLevel3

java.lang.Object
org.neuroml1.model.NeuroMLLevel3
All Implemented Interfaces:
Cloneable, org.jvnet.jaxb2_commons.lang.CopyTo2, org.jvnet.jaxb2_commons.lang.Equals2, org.jvnet.jaxb2_commons.lang.HashCode2, org.jvnet.jaxb2_commons.lang.ToString2
public class NeuroMLLevel3 extends Object implements Cloneable, org.jvnet.jaxb2_commons.lang.CopyTo2, org.jvnet.jaxb2_commons.lang.Equals2, org.jvnet.jaxb2_commons.lang.HashCode2, org.jvnet.jaxb2_commons.lang.ToString2
Description of neuronal models, including biophysics and channel mechanisms, and network connections (NeuroML Level 3).

Java class for NeuroMLLevel3 complex type.

The following schema fragment specifies the expected content contained within this class. 

 <complexType name="NeuroMLLevel3">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <group ref="{http://morphml.org/metadata/schema}metadata"/>
         <group ref="{http://morphml.org/metadata/schema}referencedata"/>
         <element name="cells" type="{http://morphml.org/neuroml/schema}Level3Cells" minOccurs="0"/>
         <element name="channels" type="{http://morphml.org/channelml/schema}ChannelML" minOccurs="0"/>
         <group ref="{http://morphml.org/networkml/schema}CoreNetworkElements" minOccurs="0"/>
       </sequence>
       <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
       <attribute name="lengthUnits" type="{http://morphml.org/metadata/schema}LengthUnits" />
       <attribute name="length_units" type="{http://morphml.org/metadata/schema}LengthUnits" />
       <attribute name="volumeUnits" type="{http://morphml.org/metadata/schema}VolumeUnits" default="cubic_millimeter" />
     </restriction>
   </complexContent>
 </complexType>

  • Field Details

  • Constructor Details

    • NeuroMLLevel3

      public NeuroMLLevel3()

  • Method Details

    • getNotes

      public String getNotes()
      Gets the value of the notes property.
      Returns:
      possible object is String

    • setNotes

      public void setNotes(String value)
      Sets the value of the notes property.
      Parameters:
      value - allowed object is String

    • getProperties

      public Properties getProperties()
      Gets the value of the properties property.
      Returns:
      possible object is Properties

    • setProperties

      public void setProperties(Properties value)
      Sets the value of the properties property.
      Parameters:
      value - allowed object is Properties

    • getAnnotation

      public Annotation getAnnotation()
      Gets the value of the annotation property.
      Returns:
      possible object is Annotation

    • setAnnotation

      public void setAnnotation(Annotation value)
      Sets the value of the annotation property.
      Parameters:
      value - allowed object is Annotation

    • getGroup

      public List<String> getGroup()
      Gets the value of the group property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the group property.

      For example, to add a new item, do as follows: 

          getGroup().add(newItem);

      Objects of the following type(s) are allowed in the list String

    • getAuthorList

      public Authors getAuthorList()
      Gets the value of the authorList property.
      Returns:
      possible object is Authors

    • setAuthorList

      public void setAuthorList(Authors value)
      Sets the value of the authorList property.
      Parameters:
      value - allowed object is Authors

    • getPublication

      public List<Publication> getPublication()
      Gets the value of the publication property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the publication property.

      For example, to add a new item, do as follows: 

          getPublication().add(newItem);

      Objects of the following type(s) are allowed in the list Publication

    • getNeuronDBref

      public List<NeuronDBReference> getNeuronDBref()
      Gets the value of the neuronDBref property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the neuronDBref property.

      For example, to add a new item, do as follows: 

          getNeuronDBref().add(newItem);

      Objects of the following type(s) are allowed in the list NeuronDBReference

    • getModelDBref

      public List<ModelDBReference> getModelDBref()
      Gets the value of the modelDBref property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the modelDBref property.

      For example, to add a new item, do as follows: 

          getModelDBref().add(newItem);

      Objects of the following type(s) are allowed in the list ModelDBReference

    • getNeuroMorphoRef

      public List<NeuroMorphoRef> getNeuroMorphoRef()
      Gets the value of the neuroMorphoRef property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the neuroMorphoRef property.

      For example, to add a new item, do as follows: 

          getNeuroMorphoRef().add(newItem);

      Objects of the following type(s) are allowed in the list NeuroMorphoRef

    • getCells

      public Level3Cells getCells()
      Gets the value of the cells property.
      Returns:
      possible object is Level3Cells

    • setCells

      public void setCells(Level3Cells value)
      Sets the value of the cells property.
      Parameters:
      value - allowed object is Level3Cells

    • getChannels

      public ChannelML getChannels()
      Gets the value of the channels property.
      Returns:
      possible object is ChannelML

    • setChannels

      public void setChannels(ChannelML value)
      Sets the value of the channels property.
      Parameters:
      value - allowed object is ChannelML

    • getPopulations

      public Populations getPopulations()
      Gets the value of the populations property.
      Returns:
      possible object is Populations

    • setPopulations

      public void setPopulations(Populations value)
      Sets the value of the populations property.
      Parameters:
      value - allowed object is Populations

    • getProjections

      public Projections getProjections()
      Gets the value of the projections property.
      Returns:
      possible object is Projections

    • setProjections

      public void setProjections(Projections value)
      Sets the value of the projections property.
      Parameters:
      value - allowed object is Projections

    • getInputs

      public Inputs getInputs()
      Gets the value of the inputs property.
      Returns:
      possible object is Inputs

    • setInputs

      public void setInputs(Inputs value)
      Sets the value of the inputs property.
      Parameters:
      value - allowed object is Inputs

    • getName

      public String getName()
      Gets the value of the name property.
      Returns:
      possible object is String

    • setName

      public void setName(String value)
      Sets the value of the name property.
      Parameters:
      value - allowed object is String

    • getLengthUnitsAlt

      public LengthUnits getLengthUnitsAlt()
      Gets the value of the lengthUnitsAlt property.
      Returns:
      possible object is LengthUnits

    • setLengthUnitsAlt

      public void setLengthUnitsAlt(LengthUnits value)
      Sets the value of the lengthUnitsAlt property.
      Parameters:
      value - allowed object is LengthUnits

    • getLengthUnits

      public LengthUnits getLengthUnits()
      Gets the value of the lengthUnits property.
      Returns:
      possible object is LengthUnits

    • setLengthUnits

      public void setLengthUnits(LengthUnits value)
      Sets the value of the lengthUnits property.
      Parameters:
      value - allowed object is LengthUnits

    • getVolumeUnits

      public VolumeUnits getVolumeUnits()
      Gets the value of the volumeUnits property.
      Returns:
      possible object is VolumeUnits

    • setVolumeUnits

      public void setVolumeUnits(VolumeUnits value)
      Sets the value of the volumeUnits property.
      Parameters:
      value - allowed object is VolumeUnits

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • append

      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, StringBuilder buffer, org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      Specified by:
      append in interface org.jvnet.jaxb2_commons.lang.ToString2

    • appendFields

      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, StringBuilder buffer, org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      Specified by:
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2

    • equals

      public boolean equals(org.jvnet.jaxb2_commons.locator.ObjectLocator thisLocator, org.jvnet.jaxb2_commons.locator.ObjectLocator thatLocator, Object object, org.jvnet.jaxb2_commons.lang.EqualsStrategy2 strategy)
      Specified by:
      equals in interface org.jvnet.jaxb2_commons.lang.Equals2

    • equals

      public boolean equals(Object object)
      Overrides:
      equals in class Object

    • hashCode

      public int hashCode(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, org.jvnet.jaxb2_commons.lang.HashCodeStrategy2 strategy)
      Specified by:
      hashCode in interface org.jvnet.jaxb2_commons.lang.HashCode2

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • clone

      public Object clone()
      Overrides:
      clone in class Object

    • copyTo

      public Object copyTo(Object target)
      Specified by:
      copyTo in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • copyTo

      public Object copyTo(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, Object target, org.jvnet.jaxb2_commons.lang.CopyStrategy2 strategy)
      Specified by:
      copyTo in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • createNewInstance

      public Object createNewInstance()
      Specified by:
      createNewInstance in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • getCellList

      public List<Level3Cell> getCellList()
      Get the list of cells in this NeuroML file

    • getPopulationList

      public List<Population> getPopulationList()
      Get the list of populations in this NeuroML file

    • getProjectionList

      public List<Projection> getProjectionList()
      Get the list of projections in this NeuroML file