Package org.neuroml1.model.morph

Class Morphology

java.lang.Object
org.neuroml1.model.morph.Morphology
All Implemented Interfaces:
Cloneable, org.jvnet.jaxb2_commons.lang.CopyTo2, org.jvnet.jaxb2_commons.lang.Equals2, org.jvnet.jaxb2_commons.lang.HashCode2, org.jvnet.jaxb2_commons.lang.ToString2
public class Morphology extends Object implements Cloneable, org.jvnet.jaxb2_commons.lang.CopyTo2, org.jvnet.jaxb2_commons.lang.Equals2, org.jvnet.jaxb2_commons.lang.HashCode2, org.jvnet.jaxb2_commons.lang.ToString2
The main element which details the neuronal morphology. Cells, various histological features, and properties associated with the data can be contained in this element

Java class for Morphology complex type.

The following schema fragment specifies the expected content contained within this class. 

 <complexType name="Morphology">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <group ref="{http://morphml.org/metadata/schema}metadata"/>
         <element name="cells" type="{http://morphml.org/morphml/schema}Cells"/>
         <element name="features" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <group ref="{http://morphml.org/metadata/schema}metadata"/>
                   <element name="feature" type="{http://morphml.org/morphml/schema}Feature" maxOccurs="unbounded"/>
                 </sequence>
               </restriction>
             </complexContent>
           </complexType>
         </element>
         <element name="propertyDetails" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <element name="propertyDetail" type="{http://morphml.org/metadata/schema}PropertyDetail" maxOccurs="unbounded"/>
                 </sequence>
               </restriction>
             </complexContent>
           </complexType>
         </element>
         <element name="groupDetails" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <element name="groupDetail" type="{http://morphml.org/metadata/schema}GroupDetail" maxOccurs="unbounded"/>
                 </sequence>
               </restriction>
             </complexContent>
           </complexType>
         </element>
       </sequence>
       <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
       <attribute name="lengthUnits" type="{http://morphml.org/metadata/schema}LengthUnits" />
       <attribute name="length_units" type="{http://morphml.org/metadata/schema}LengthUnits" />
       <attribute name="volumeUnits" type="{http://morphml.org/metadata/schema}VolumeUnits" default="cubic_millimeter" />
     </restriction>
   </complexContent>
 </complexType>

  • Field Details

  • Constructor Details

    • Morphology

      public Morphology()

  • Method Details

    • getNotes

      public String getNotes()
      Gets the value of the notes property.
      Returns:
      possible object is String

    • setNotes

      public void setNotes(String value)
      Sets the value of the notes property.
      Parameters:
      value - allowed object is String

    • getProperties

      public Properties getProperties()
      Gets the value of the properties property.
      Returns:
      possible object is Properties

    • setProperties

      public void setProperties(Properties value)
      Sets the value of the properties property.
      Parameters:
      value - allowed object is Properties

    • getAnnotation

      public Annotation getAnnotation()
      Gets the value of the annotation property.
      Returns:
      possible object is Annotation

    • setAnnotation

      public void setAnnotation(Annotation value)
      Sets the value of the annotation property.
      Parameters:
      value - allowed object is Annotation

    • getGroup

      public List<String> getGroup()
      Gets the value of the group property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the group property.

      For example, to add a new item, do as follows: 

          getGroup().add(newItem);

      Objects of the following type(s) are allowed in the list String

    • getCells

      public Cells getCells()
      Gets the value of the cells property.
      Returns:
      possible object is Cells

    • setCells

      public void setCells(Cells value)
      Sets the value of the cells property.
      Parameters:
      value - allowed object is Cells

    • getFeatures

      public Morphology.Features getFeatures()
      Gets the value of the features property.
      Returns:
      possible object is Morphology.Features

    • setFeatures

      public void setFeatures(Morphology.Features value)
      Sets the value of the features property.
      Parameters:
      value - allowed object is Morphology.Features

    • getPropertyDetails

      public Morphology.PropertyDetails getPropertyDetails()
      Gets the value of the propertyDetails property.
      Returns:
      possible object is Morphology.PropertyDetails

    • setPropertyDetails

      public void setPropertyDetails(Morphology.PropertyDetails value)
      Sets the value of the propertyDetails property.
      Parameters:
      value - allowed object is Morphology.PropertyDetails

    • getGroupDetails

      public Morphology.GroupDetails getGroupDetails()
      Gets the value of the groupDetails property.
      Returns:
      possible object is Morphology.GroupDetails

    • setGroupDetails

      public void setGroupDetails(Morphology.GroupDetails value)
      Sets the value of the groupDetails property.
      Parameters:
      value - allowed object is Morphology.GroupDetails

    • getName

      public String getName()
      Gets the value of the name property.
      Returns:
      possible object is String

    • setName

      public void setName(String value)
      Sets the value of the name property.
      Parameters:
      value - allowed object is String

    • getLengthUnitsAlt

      public LengthUnits getLengthUnitsAlt()
      Gets the value of the lengthUnitsAlt property.
      Returns:
      possible object is LengthUnits

    • setLengthUnitsAlt

      public void setLengthUnitsAlt(LengthUnits value)
      Sets the value of the lengthUnitsAlt property.
      Parameters:
      value - allowed object is LengthUnits

    • getLengthUnits

      public LengthUnits getLengthUnits()
      Gets the value of the lengthUnits property.
      Returns:
      possible object is LengthUnits

    • setLengthUnits

      public void setLengthUnits(LengthUnits value)
      Sets the value of the lengthUnits property.
      Parameters:
      value - allowed object is LengthUnits

    • getVolumeUnits

      public VolumeUnits getVolumeUnits()
      Gets the value of the volumeUnits property.
      Returns:
      possible object is VolumeUnits

    • setVolumeUnits

      public void setVolumeUnits(VolumeUnits value)
      Sets the value of the volumeUnits property.
      Parameters:
      value - allowed object is VolumeUnits

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • append

      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, StringBuilder buffer, org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      Specified by:
      append in interface org.jvnet.jaxb2_commons.lang.ToString2

    • appendFields

      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, StringBuilder buffer, org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      Specified by:
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2

    • equals

      public boolean equals(org.jvnet.jaxb2_commons.locator.ObjectLocator thisLocator, org.jvnet.jaxb2_commons.locator.ObjectLocator thatLocator, Object object, org.jvnet.jaxb2_commons.lang.EqualsStrategy2 strategy)
      Specified by:
      equals in interface org.jvnet.jaxb2_commons.lang.Equals2

    • equals

      public boolean equals(Object object)
      Overrides:
      equals in class Object

    • hashCode

      public int hashCode(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, org.jvnet.jaxb2_commons.lang.HashCodeStrategy2 strategy)
      Specified by:
      hashCode in interface org.jvnet.jaxb2_commons.lang.HashCode2

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • clone

      public Object clone()
      Overrides:
      clone in class Object

    • copyTo

      public Object copyTo(Object target)
      Specified by:
      copyTo in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • copyTo

      public Object copyTo(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, Object target, org.jvnet.jaxb2_commons.lang.CopyStrategy2 strategy)
      Specified by:
      copyTo in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • createNewInstance

      public Object createNewInstance()
      Specified by:
      createNewInstance in interface org.jvnet.jaxb2_commons.lang.CopyTo2

    • getCellList

      public List<Cell> getCellList()
      Gets the list of cells for this Morphology.