Index (org.neuroml.model 1.10.1 API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

A

a - Variable in class org.neuroml.model.AdExIaFCell
a - Variable in class org.neuroml.model.EIFCondExpIsfaIsta
a - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
a - Variable in class org.neuroml.model.HindmarshRose1984Cell
a - Variable in class org.neuroml.model.Izhikevich2007Cell
a - Variable in class org.neuroml.model.IzhikevichCell
active - Variable in class org.neuroml.model.VoltageClampTriple
Adapter1 - Class in org.neuroml.model
Adapter1() - Constructor for class org.neuroml.model.Adapter1
Adapter2 - Class in org.neuroml.model
Adapter2() - Constructor for class org.neuroml.model.Adapter2
addElementToDocument(NeuroMLDocument, Standalone) - Static method in class org.neuroml.model.util.NeuroMLConverter
addStringAttribute(Group, String, String, H5File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
adExIaFCell - Variable in class org.neuroml.model.NeuroMLDocument
AdExIaFCell - Class in org.neuroml.model: Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
AdExIaFCell() - Constructor for class org.neuroml.model.AdExIaFCell
AllowedSpaces - Enum in org.neuroml.model: Java class for allowedSpaces.
alphac - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
alphaCondSynapse - Variable in class org.neuroml.model.NeuroMLDocument
AlphaCondSynapse - Class in org.neuroml.model: Alpha synapse: rise time and decay time are both tau_syn.
AlphaCondSynapse() - Constructor for class org.neuroml.model.AlphaCondSynapse
alphaCurrentSynapse - Variable in class org.neuroml.model.NeuroMLDocument
AlphaCurrentSynapse - Class in org.neuroml.model: Alpha current synapse: rise time and decay time are both **tau.** \n :param tau: Time course for rise and decay :type tau: time :param ibase: Baseline current increase after receiving a spike :type ibase: current
AlphaCurrentSynapse() - Constructor for class org.neuroml.model.AlphaCurrentSynapse
alphaCurrSynapse - Variable in class org.neuroml.model.NeuroMLDocument
AlphaCurrSynapse - Class in org.neuroml.model: Alpha synapse: rise time and decay time are both tau_syn.
AlphaCurrSynapse() - Constructor for class org.neuroml.model.AlphaCurrSynapse
alphaSynapse - Variable in class org.neuroml.model.NeuroMLDocument
AlphaSynapse - Class in org.neuroml.model: Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** \n :param tau: Time course of rise/decay :type tau: time :param gbase: Baseline conductance, generally the maximum conductance following a single spike :type gbase: conductance :param erev: Reversal potential of the synapse :type erev: voltage
AlphaSynapse() - Constructor for class org.neuroml.model.AlphaSynapse
amplitude - Variable in class org.neuroml.model.PulseGenerator
amplitude - Variable in class org.neuroml.model.PulseGeneratorDL
amplitude - Variable in class org.neuroml.model.SineGenerator
amplitude - Variable in class org.neuroml.model.SineGeneratorDL
annotation - Variable in class org.neuroml.model.SegmentGroup
annotation - Variable in class org.neuroml.model.Standalone
Annotation - Class in org.neuroml.model: A structured annotation containing metadata, specifically RDF or **property** elements
Annotation() - Constructor for class org.neuroml.model.Annotation
any - Variable in class org.neuroml.model.Annotation
any - Variable in class org.neuroml.model.CellSet
any - Variable in class org.neuroml.model.ForwardTransition
any - Variable in class org.neuroml.model.ReactionScheme
any - Variable in class org.neuroml.model.Region
any - Variable in class org.neuroml.model.ReverseTransition
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AdExIaFCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCondSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCurrentSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCurrSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Annotation
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Base
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCellMembPotCap
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConductanceBasedSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnection
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnectionNewFormat
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnectionOldFormat
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCurrentBasedSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseNonNegativeIntegerId
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseProjection
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNIaFCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNIaFCondCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePynnSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseVoltageDepSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseWithoutId
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BiophysicalProperties
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BiophysicalProperties2CaPools
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BlockingPlasticSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BlockMechanism
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Case
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Cell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Cell2CaPools
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CellSet
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensity
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityGHK
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityGHK2
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNernst
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNernstCa2
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniform
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityVShift
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelPopulation
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ClosedState
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ComponentType
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CompoundInput
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CompoundInputDL
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConcentrationModelD
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConditionalDerivedVariable
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Connection
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConnectionWD
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Constant
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnection
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnectionInstance
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnectionInstanceW
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousProjection
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DecayingPoolConcentrationModel
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DerivedParameter
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DerivedVariable
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DistalDetails
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DoubleSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Dynamics
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EIFCondAlphaIsfaIsta
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EIFCondExpIsfaIsta
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnection
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnectionInstance
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnectionInstanceW
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalProjection
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EventOut
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpCondSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpCurrSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExplicitInput
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpOneSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Exposure
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpThreeSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpTwoSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExtracellularProperties
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExtracellularPropertiesLocal
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FitzHughNagumo1969Cell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FitzHughNagumoCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FixedFactorConcentrationModel
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ForwardTransition
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GapJunction
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateFractional
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateFractionalSubgate
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHInstantaneous
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRates
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesInf
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesTau
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesTauInf
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHTauInf
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHUndetermined
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateKS
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GradedSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GridLayout
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHCondExp
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHRate
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHTime
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHVariable
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HindmarshRose1984Cell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafRefCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafTauCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafTauRefCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCondAlpha
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCondExp
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCurrAlpha
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCurrExp
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Include
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IncludeType
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InhomogeneousParameter
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InhomogeneousValue
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InitMembPotential
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Input
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InputList
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InputW
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Instance
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InstanceRequirement
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IntracellularProperties
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IntracellularProperties2CaPools
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannel
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelHH
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelKS
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelScalable
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelVShift
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Izhikevich2007Cell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IzhikevichCell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Layout
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.LEMSProperty
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.LinearGradedSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Location
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Member
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.MembraneProperties
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.MembraneProperties2CaPools
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Morphology
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NamedDimensionalType
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NamedDimensionalVariable
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Network
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NeuroMLDocument
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnCondition
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnEntry
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnEvent
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnStart
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OpenState
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Parameter
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Path
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PlasticityMechanism
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Point3DWithDiam
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PoissonFiringSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Population
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Projection
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Property
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ProximalDetails
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PulseGenerator
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PulseGeneratorDL
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Q10ConductanceScaling
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Q10Settings
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RampGenerator
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RampGeneratorDL
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RandomLayout
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ReactionScheme
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Regime
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Region
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Requirement
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Resistivity
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ReverseTransition
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Segment
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentEndPoint
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentGroup
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentParent
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SilentSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SineGenerator
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SineGeneratorDL
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Space
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpaceStructure
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Species
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpecificCapacitance
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Spike
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeArray
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGenerator
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorPoisson
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorRandom
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorRefPoisson
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeSourcePoisson
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeThresh
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Standalone
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.StateAssignment
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.StateVariable
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SubTree
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SynapticConnection
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TauInfTransition
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TimeDerivative
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TimedSynapticInput
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TransientPoissonFiringSynapse
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Transition
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.UnstructuredLayout
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VariableParameter
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VoltageClamp
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VoltageClampTriple
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AdExIaFCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCondSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCurrentSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCurrSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Annotation
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Base
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCellMembPotCap
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConductanceBasedSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnection
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnectionNewFormat
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnectionOldFormat
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCurrentBasedSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseNonNegativeIntegerId
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseProjection
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNIaFCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNIaFCondCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePynnSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseVoltageDepSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseWithoutId
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BiophysicalProperties
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BiophysicalProperties2CaPools
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BlockingPlasticSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BlockMechanism
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Case
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Cell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Cell2CaPools
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CellSet
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensity
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityGHK
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityGHK2
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNernst
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNernstCa2
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniform
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityVShift
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelPopulation
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ClosedState
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ComponentType
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CompoundInput
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CompoundInputDL
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConcentrationModelD
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConditionalDerivedVariable
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Connection
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConnectionWD
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Constant
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnection
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnectionInstance
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnectionInstanceW
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousProjection
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DecayingPoolConcentrationModel
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DerivedParameter
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DerivedVariable
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DistalDetails
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DoubleSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Dynamics
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EIFCondAlphaIsfaIsta
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EIFCondExpIsfaIsta
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnection
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnectionInstance
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnectionInstanceW
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalProjection
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EventOut
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpCondSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpCurrSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExplicitInput
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpOneSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Exposure
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpThreeSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpTwoSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExtracellularProperties
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExtracellularPropertiesLocal
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FitzHughNagumo1969Cell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FitzHughNagumoCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FixedFactorConcentrationModel
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ForwardTransition
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GapJunction
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateFractional
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateFractionalSubgate
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHInstantaneous
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRates
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesInf
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesTau
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesTauInf
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHTauInf
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHUndetermined
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateKS
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GradedSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GridLayout
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHCondExp
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHRate
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHTime
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHVariable
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HindmarshRose1984Cell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafRefCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafTauCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafTauRefCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCondAlpha
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCondExp
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCurrAlpha
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCurrExp
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Include
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IncludeType
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InhomogeneousParameter
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InhomogeneousValue
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InitMembPotential
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Input
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InputList
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InputW
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Instance
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InstanceRequirement
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IntracellularProperties
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IntracellularProperties2CaPools
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannel
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelHH
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelKS
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelScalable
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelVShift
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Izhikevich2007Cell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IzhikevichCell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Layout
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.LEMSProperty
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.LinearGradedSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Location
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Member
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.MembraneProperties
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.MembraneProperties2CaPools
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Morphology
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NamedDimensionalType
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NamedDimensionalVariable
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Network
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NeuroMLDocument
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnCondition
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnEntry
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnEvent
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnStart
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OpenState
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Parameter
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Path
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PlasticityMechanism
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Point3DWithDiam
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PoissonFiringSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Population
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Projection
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Property
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ProximalDetails
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PulseGenerator
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PulseGeneratorDL
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Q10ConductanceScaling
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Q10Settings
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RampGenerator
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RampGeneratorDL
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RandomLayout
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ReactionScheme
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Regime
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Region
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Requirement
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Resistivity
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ReverseTransition
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Segment
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentEndPoint
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentGroup
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentParent
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SilentSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SineGenerator
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SineGeneratorDL
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Space
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpaceStructure
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Species
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpecificCapacitance
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Spike
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeArray
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGenerator
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorPoisson
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorRandom
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorRefPoisson
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeSourcePoisson
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeThresh
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Standalone
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.StateAssignment
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.StateVariable
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SubTree
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SynapticConnection
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TauInfTransition
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TimeDerivative
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TimedSynapticInput
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TransientPoissonFiringSynapse
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Transition
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.UnstructuredLayout
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VariableParameter
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VoltageClamp
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VoltageClampTriple
averageRate - Variable in class org.neuroml.model.PoissonFiringSynapse
averageRate - Variable in class org.neuroml.model.SpikeGeneratorPoisson
averageRate - Variable in class org.neuroml.model.TransientPoissonFiringSynapse

B

b - Variable in class org.neuroml.model.AdExIaFCell
b - Variable in class org.neuroml.model.EIFCondExpIsfaIsta
b - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
b - Variable in class org.neuroml.model.HindmarshRose1984Cell
b - Variable in class org.neuroml.model.Izhikevich2007Cell
b - Variable in class org.neuroml.model.IzhikevichCell
Base - Class in org.neuroml.model: Anything which can have a unique (within its parent) id of the form NmlId (spaceless combination of letters, numbers and underscore).
Base() - Constructor for class org.neuroml.model.Base
BASE_CELL_CAP_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_CELL_CAP_POINT_COND_BASED - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_CELL_CAP_POINT_COND_BASED_CA - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_CELL_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_CELL_COMP_TYPE_CAP__I_MEMB - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_CONC_DEP_RATE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_CONC_DEP_VAR_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_COND_SCALING_CA - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_GATE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_GRADED_SYNAPSE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_IAF_CAP_CELL - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_IAF_CELL - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_ION_CHANNEL_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_PLASTICITY_MECHANISM_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_POINT_CURR_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_POINT_CURR_DL_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_PYNN_CELL - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_RATE_SYNAPSE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_RATE_UNIT - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_SPIKE_SOURCE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_SYNAPSE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
BASE_VOLT_DEP_CURR_SRC_SPIKING_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
baseCell - Variable in class org.neuroml.model.NeuroMLDocument
BaseCell - Class in org.neuroml.model: Base type of any cell ( e.
BaseCell() - Constructor for class org.neuroml.model.BaseCell
BaseCellMembPotCap - Class in org.neuroml.model: Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) \n :param C: Total capacitance of the cell membrane :type C: capacitance
BaseCellMembPotCap() - Constructor for class org.neuroml.model.BaseCellMembPotCap
BaseConductanceBasedSynapse - Class in org.neuroml.model: Synapse model which exposes a conductance **g** in addition to producing a current.
BaseConductanceBasedSynapse() - Constructor for class org.neuroml.model.BaseConductanceBasedSynapse
BaseConductanceBasedSynapseTwo - Class in org.neuroml.model: Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
BaseConductanceBasedSynapseTwo() - Constructor for class org.neuroml.model.BaseConductanceBasedSynapseTwo
BaseConnection - Class in org.neuroml.model: Base of all synaptic connections (chemical/electrical/analog, etc.) inside projections
BaseConnection() - Constructor for class org.neuroml.model.BaseConnection
BaseConnectionNewFormat - Class in org.neuroml.model: Base of all synaptic connections with preCell, postSegment, etc.
BaseConnectionNewFormat() - Constructor for class org.neuroml.model.BaseConnectionNewFormat
BaseConnectionOldFormat - Class in org.neuroml.model: Base of all synaptic connections with preCellId, postSegmentId, etc.
BaseConnectionOldFormat() - Constructor for class org.neuroml.model.BaseConnectionOldFormat
BaseCurrentBasedSynapse - Class in org.neuroml.model: Synapse model which produces a synaptic current.
BaseCurrentBasedSynapse() - Constructor for class org.neuroml.model.BaseCurrentBasedSynapse
basedOn - Variable in class org.neuroml.model.Space
baselineAmplitude - Variable in class org.neuroml.model.RampGenerator
baselineAmplitude - Variable in class org.neuroml.model.RampGeneratorDL
BaseNonNegativeIntegerId - Class in org.neuroml.model: Anything which can have a unique (within its parent) id, which must be an integer zero or greater.
BaseNonNegativeIntegerId() - Constructor for class org.neuroml.model.BaseNonNegativeIntegerId
BaseProjection - Class in org.neuroml.model: Base for projection (set of synaptic connections) between two populations
BaseProjection() - Constructor for class org.neuroml.model.BaseProjection
BasePyNNCell - Class in org.neuroml.model: Base type of any PyNN standard cell model.
BasePyNNCell() - Constructor for class org.neuroml.model.BasePyNNCell
BasePyNNIaFCell - Class in org.neuroml.model: Base type of any PyNN standard integrate and fire model \n :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
BasePyNNIaFCell() - Constructor for class org.neuroml.model.BasePyNNIaFCell
BasePyNNIaFCondCell - Class in org.neuroml.model: Base type of conductance based PyNN IaF cell models \n :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_E: none :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_I: none :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
BasePyNNIaFCondCell() - Constructor for class org.neuroml.model.BasePyNNIaFCondCell
BasePynnSynapse - Class in org.neuroml.model: Base type for all PyNN synapses.
BasePynnSynapse() - Constructor for class org.neuroml.model.BasePynnSynapse
BaseSynapse - Class in org.neuroml.model: Base type for all synapses, i.
BaseSynapse() - Constructor for class org.neuroml.model.BaseSynapse
BaseVoltageDepSynapse - Class in org.neuroml.model: Base type for synapses with a dependence on membrane potential
BaseVoltageDepSynapse() - Constructor for class org.neuroml.model.BaseVoltageDepSynapse
BaseWithoutId - Class in org.neuroml.model: Base element without ID specified *yet*, e.g.
BaseWithoutId() - Constructor for class org.neuroml.model.BaseWithoutId
betac - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
biophysicalProperties - Variable in class org.neuroml.model.Cell
biophysicalProperties - Variable in class org.neuroml.model.NeuroMLDocument
BiophysicalProperties - Class in org.neuroml.model: The biophysical properties of the **cell** , including the **membraneProperties** and the **intracellularProperties**
BiophysicalProperties() - Constructor for class org.neuroml.model.BiophysicalProperties
biophysicalProperties2CaPools - Variable in class org.neuroml.model.Cell2CaPools
BiophysicalProperties2CaPools - Class in org.neuroml.model: The biophysical properties of the **cell** , including the **membraneProperties2CaPools** and the **intracellularProperties2CaPools** for a cell with two Ca pools
BiophysicalProperties2CaPools() - Constructor for class org.neuroml.model.BiophysicalProperties2CaPools
biophysicalPropertiesAttr - Variable in class org.neuroml.model.Cell
blockConcentration - Variable in class org.neuroml.model.BlockMechanism
blockingPlasticSynapse - Variable in class org.neuroml.model.NeuroMLDocument
BlockingPlasticSynapse - Class in org.neuroml.model: Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
BlockingPlasticSynapse() - Constructor for class org.neuroml.model.BlockingPlasticSynapse
blockMechanism - Variable in class org.neuroml.model.BlockingPlasticSynapse
BlockMechanism - Class in org.neuroml.model: Java class for BlockMechanism complex type.
BlockMechanism() - Constructor for class org.neuroml.model.BlockMechanism
BlockTypes - Enum in org.neuroml.model: Java class for BlockTypes.

C

c - Variable in class org.neuroml.model.HindmarshRose1984Cell
c - Variable in class org.neuroml.model.IafCell
c - Variable in class org.neuroml.model.Izhikevich2007Cell
c - Variable in class org.neuroml.model.IzhikevichCell
cap - Variable in class org.neuroml.model.BaseCellMembPotCap
Case - Class in org.neuroml.model: Java class for Case complex type.
Case() - Constructor for class org.neuroml.model.Case
cell - Variable in class org.neuroml.model.NeuroMLDocument
Cell - Class in org.neuroml.model: Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
Cell() - Constructor for class org.neuroml.model.Cell
CELL_2CA_POOLS_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
CELL_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
cell2CaPools - Variable in class org.neuroml.model.NeuroMLDocument
Cell2CaPools - Class in org.neuroml.model: Variant of cell with two independent Ca2+ pools.
Cell2CaPools() - Constructor for class org.neuroml.model.Cell2CaPools
cellSet - Variable in class org.neuroml.model.Network
CellSet - Class in org.neuroml.model: Java class for CellSet complex type.
CellSet() - Constructor for class org.neuroml.model.CellSet
CellUtils - Class in org.neuroml.model.util
CellUtils() - Constructor for class org.neuroml.model.util.CellUtils
channelDensity - Variable in class org.neuroml.model.MembraneProperties
ChannelDensity - Class in org.neuroml.model: Specifies a time varying ohmic conductance density, **gDensity,** which is distributed on an area of the **cell** ( specified in **membraneProperties** ) with fixed reversal potential **erev** producing a current density **iDensity** \n :param erev: The reversal potential of the current produced :type erev: voltage :param condDensity: :type condDensity: conductanceDensity
ChannelDensity() - Constructor for class org.neuroml.model.ChannelDensity
channelDensityGHK - Variable in class org.neuroml.model.MembraneProperties
ChannelDensityGHK - Class in org.neuroml.model: Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity** and whose reversal potential is calculated from the Goldman Hodgkin Katz equation.
ChannelDensityGHK() - Constructor for class org.neuroml.model.ChannelDensityGHK
channelDensityGHK2 - Variable in class org.neuroml.model.MembraneProperties
ChannelDensityGHK2 - Class in org.neuroml.model: Time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity.** Modified version of Jaffe et al.
ChannelDensityGHK2() - Constructor for class org.neuroml.model.ChannelDensityGHK2
channelDensityNernst - Variable in class org.neuroml.model.MembraneProperties
ChannelDensityNernst - Class in org.neuroml.model: Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the **cell,** producing a current density **iDensity** and whose reversal potential is calculated from the Nernst equation.
ChannelDensityNernst() - Constructor for class org.neuroml.model.ChannelDensityNernst
channelDensityNernstCa2 - Variable in class org.neuroml.model.MembraneProperties2CaPools
ChannelDensityNernstCa2 - Class in org.neuroml.model: This component is similar to the original component type **channelDensityNernst** but it is changed in order to have a reversal potential that depends on a second independent Ca++ pool ( ca2 ).
ChannelDensityNernstCa2() - Constructor for class org.neuroml.model.ChannelDensityNernstCa2
channelDensityNonUniform - Variable in class org.neuroml.model.MembraneProperties
ChannelDensityNonUniform - Class in org.neuroml.model: Specifies a time varying ohmic conductance density, which is distributed on a region of the **cell.** The conductance density of the channel is not uniform, but is set using the **variableParameter** .
ChannelDensityNonUniform() - Constructor for class org.neuroml.model.ChannelDensityNonUniform
channelDensityNonUniformGHK - Variable in class org.neuroml.model.MembraneProperties
ChannelDensityNonUniformGHK - Class in org.neuroml.model: Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose current is calculated from the Goldman-Hodgkin-Katz equation.
ChannelDensityNonUniformGHK() - Constructor for class org.neuroml.model.ChannelDensityNonUniformGHK
channelDensityNonUniformNernst - Variable in class org.neuroml.model.MembraneProperties
ChannelDensityNonUniformNernst - Class in org.neuroml.model: Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose reversal potential is calculated from the Nernst equation.
ChannelDensityNonUniformNernst() - Constructor for class org.neuroml.model.ChannelDensityNonUniformNernst
channelDensityVShift - Variable in class org.neuroml.model.MembraneProperties
ChannelDensityVShift - Class in org.neuroml.model: Same as **channelDensity** , but with a **vShift** parameter to change voltage activation of gates.
ChannelDensityVShift() - Constructor for class org.neuroml.model.ChannelDensityVShift
channelPopulation - Variable in class org.neuroml.model.MembraneProperties
ChannelPopulation - Class in org.neuroml.model: Population of a **number** of ohmic ion channels.
ChannelPopulation() - Constructor for class org.neuroml.model.ChannelPopulation
ChannelTypes - Enum in org.neuroml.model: Java class for channelTypes.
close(H5File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
closedState - Variable in class org.neuroml.model.GateKS
ClosedState - Class in org.neuroml.model: A **KSState** with **relativeConductance** of 0 \n :param relativeConductance: :type relativeConductance: none
ClosedState() - Constructor for class org.neuroml.model.ClosedState
cm - Variable in class org.neuroml.model.BasePyNNCell
cm - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
compare(String, String) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
component - Variable in class org.neuroml.model.InputList
component - Variable in class org.neuroml.model.Population
componentType - Variable in class org.neuroml.model.NeuroMLDocument
ComponentType - Class in org.neuroml.model: Contains an extension to NeuroML by creating custom LEMS ComponentType.
ComponentType() - Constructor for class org.neuroml.model.ComponentType
compoundInput - Variable in class org.neuroml.model.NeuroMLDocument
CompoundInput - Class in org.neuroml.model: Generates a current which is the sum of all its child **basePointCurrent** element, e.
CompoundInput() - Constructor for class org.neuroml.model.CompoundInput
compoundInputDL - Variable in class org.neuroml.model.NeuroMLDocument
CompoundInputDL - Class in org.neuroml.model: Generates a current which is the sum of all its child **basePointCurrentDL** elements, e.
CompoundInputDL() - Constructor for class org.neuroml.model.CompoundInputDL
CONC_MODEL_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
CONC_MODEL_CONC_STATE_VAR - Static variable in class org.neuroml.model.util.NeuroMLElements
CONC_MODEL_INIT_CONC - Static variable in class org.neuroml.model.util.NeuroMLElements
CONC_MODEL_INIT_EXT_CONC - Static variable in class org.neuroml.model.util.NeuroMLElements
CONC_MODEL_SURF_AREA - Static variable in class org.neuroml.model.util.NeuroMLElements
concentrationModel - Variable in class org.neuroml.model.Species
ConcentrationModelD - Class in org.neuroml.model: Java class for ConcentrationModel_D complex type.
ConcentrationModelD() - Constructor for class org.neuroml.model.ConcentrationModelD
condDensity - Variable in class org.neuroml.model.ChannelDensity
condDensity - Variable in class org.neuroml.model.ChannelDensityGHK2
condDensity - Variable in class org.neuroml.model.ChannelDensityNernst
condition - Variable in class org.neuroml.model.Case
conditionalDerivedVariable - Variable in class org.neuroml.model.Dynamics
ConditionalDerivedVariable - Class in org.neuroml.model: Java class for ConditionalDerivedVariable complex type.
ConditionalDerivedVariable() - Constructor for class org.neuroml.model.ConditionalDerivedVariable
conditioningVoltage - Variable in class org.neuroml.model.VoltageClampTriple
conductance - Variable in class org.neuroml.model.GapJunction
conductance - Variable in class org.neuroml.model.GradedSynapse
conductance - Variable in class org.neuroml.model.IonChannel
conductance - Variable in class org.neuroml.model.IonChannelKS
conductance - Variable in class org.neuroml.model.LinearGradedSynapse
connection - Variable in class org.neuroml.model.Projection
Connection - Class in org.neuroml.model: Event connection directly between named components, which gets processed via a new instance of a **synapse** component which is created on the target component.
Connection() - Constructor for class org.neuroml.model.Connection
CONNECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
CONNECTION_WEIGHT_DELAY - Static variable in class org.neuroml.model.util.NeuroMLElements
connectionInfo(BaseConnectionNewFormat) - Static method in class org.neuroml.model.util.NeuroMLConverter
connectionInfo(BaseConnectionOldFormat) - Static method in class org.neuroml.model.util.NeuroMLConverter
connectionWD - Variable in class org.neuroml.model.Projection
ConnectionWD - Class in org.neuroml.model: Event connection between named components, which gets processed via a new instance of a synapse component which is created on the target component, includes setting of **weight** and **delay** for the synaptic connection \n :param weight: :type weight: none :param delay: :type delay: time
ConnectionWD() - Constructor for class org.neuroml.model.ConnectionWD
constant - Variable in class org.neuroml.model.ComponentType
Constant - Class in org.neuroml.model: LEMS ComponentType for Constant.
Constant() - Constructor for class org.neuroml.model.Constant
CONTINUOUS_CONNECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
CONTINUOUS_CONNECTION_INSTANCE - Static variable in class org.neuroml.model.util.NeuroMLElements
CONTINUOUS_CONNECTION_INSTANCE_WEIGHT - Static variable in class org.neuroml.model.util.NeuroMLElements
CONTINUOUS_PROJECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
continuousConnection - Variable in class org.neuroml.model.ContinuousProjection
ContinuousConnection - Class in org.neuroml.model: An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
ContinuousConnection() - Constructor for class org.neuroml.model.ContinuousConnection
continuousConnectionInstance - Variable in class org.neuroml.model.ContinuousProjection
ContinuousConnectionInstance - Class in org.neuroml.model: An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
ContinuousConnectionInstance() - Constructor for class org.neuroml.model.ContinuousConnectionInstance
continuousConnectionInstanceW - Variable in class org.neuroml.model.ContinuousProjection
ContinuousConnectionInstanceW - Class in org.neuroml.model: An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
ContinuousConnectionInstanceW() - Constructor for class org.neuroml.model.ContinuousConnectionInstanceW
continuousProjection - Variable in class org.neuroml.model.Network
ContinuousProjection - Class in org.neuroml.model: A projection between **presynapticPopulation** and **postsynapticPopulation** through components **preComponent** at the start and **postComponent** at the end of a **continuousConnection** or **continuousConnectionInstance** .
ContinuousProjection() - Constructor for class org.neuroml.model.ContinuousProjection
convertNeuroML2ToLems(String) - Static method in class org.neuroml.model.util.NeuroMLConverter
createAdExIaFCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of AdExIaFCell
createAlphaCondSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of AlphaCondSynapse
createAlphaCurrentSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of AlphaCurrentSynapse
createAlphaCurrSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of AlphaCurrSynapse
createAlphaSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of AlphaSynapse
createAnnotation() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Annotation
createBase() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Base
createBaseCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseCell
createBaseCellMembPotCap() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseCellMembPotCap
createBaseConductanceBasedSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseConductanceBasedSynapse
createBaseConductanceBasedSynapseTwo() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseConductanceBasedSynapseTwo
createBaseConnection() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseConnection
createBaseConnectionNewFormat() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseConnectionNewFormat
createBaseConnectionOldFormat() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseConnectionOldFormat
createBaseCurrentBasedSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseCurrentBasedSynapse
createBaseNonNegativeIntegerId() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseNonNegativeIntegerId
createBaseProjection() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseProjection
createBasePyNNCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BasePyNNCell
createBasePyNNIaFCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BasePyNNIaFCell
createBasePyNNIaFCondCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BasePyNNIaFCondCell
createBasePynnSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BasePynnSynapse
createBaseSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseSynapse
createBaseVoltageDepSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseVoltageDepSynapse
createBaseWithoutId() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BaseWithoutId
createBiophysicalProperties() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BiophysicalProperties
createBiophysicalProperties2CaPools() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BiophysicalProperties2CaPools
createBlockingPlasticSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BlockingPlasticSynapse
createBlockMechanism() - Method in class org.neuroml.model.ObjectFactory: Create an instance of BlockMechanism
createCase() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Case
createCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Cell
createCell2CaPools() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Cell2CaPools
createCellSet() - Method in class org.neuroml.model.ObjectFactory: Create an instance of CellSet
createChannelDensity() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ChannelDensity
createChannelDensityGHK() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ChannelDensityGHK
createChannelDensityGHK2() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ChannelDensityGHK2
createChannelDensityNernst() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ChannelDensityNernst
createChannelDensityNernstCa2() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ChannelDensityNernstCa2
createChannelDensityNonUniform() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ChannelDensityNonUniform
createChannelDensityNonUniformGHK() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ChannelDensityNonUniformGHK
createChannelDensityNonUniformNernst() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ChannelDensityNonUniformNernst
createChannelDensityVShift() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ChannelDensityVShift
createChannelPopulation() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ChannelPopulation
createClosedState() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ClosedState
createComponentType() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ComponentType
createCompoundInput() - Method in class org.neuroml.model.ObjectFactory: Create an instance of CompoundInput
createCompoundInputDL() - Method in class org.neuroml.model.ObjectFactory: Create an instance of CompoundInputDL
createConcentrationModelD() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ConcentrationModelD
createConditionalDerivedVariable() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ConditionalDerivedVariable
createConnection() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Connection
createConnectionWD() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ConnectionWD
createConstant() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Constant
createContinuousConnection() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ContinuousConnection
createContinuousConnectionInstance() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ContinuousConnectionInstance
createContinuousConnectionInstanceW() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ContinuousConnectionInstanceW
createContinuousProjection() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ContinuousProjection
createDecayingPoolConcentrationModel() - Method in class org.neuroml.model.ObjectFactory: Create an instance of DecayingPoolConcentrationModel
createDerivedParameter() - Method in class org.neuroml.model.ObjectFactory: Create an instance of DerivedParameter
createDerivedVariable() - Method in class org.neuroml.model.ObjectFactory: Create an instance of DerivedVariable
createDistalDetails() - Method in class org.neuroml.model.ObjectFactory: Create an instance of DistalDetails
createDoubleSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of DoubleSynapse
createDynamics() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Dynamics
createEIFCondAlphaIsfaIsta() - Method in class org.neuroml.model.ObjectFactory: Create an instance of EIFCondAlphaIsfaIsta
createEIFCondExpIsfaIsta() - Method in class org.neuroml.model.ObjectFactory: Create an instance of EIFCondExpIsfaIsta
createElectricalConnection() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ElectricalConnection
createElectricalConnectionInstance() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ElectricalConnectionInstance
createElectricalConnectionInstanceW() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ElectricalConnectionInstanceW
createElectricalProjection() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ElectricalProjection
createEventOut() - Method in class org.neuroml.model.ObjectFactory: Create an instance of EventOut
createExpCondSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ExpCondSynapse
createExpCurrSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ExpCurrSynapse
createExplicitInput() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ExplicitInput
createExpOneSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ExpOneSynapse
createExposure() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Exposure
createExpThreeSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ExpThreeSynapse
createExpTwoSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ExpTwoSynapse
createExtracellularProperties() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ExtracellularProperties
createExtracellularPropertiesLocal() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ExtracellularPropertiesLocal
createFitzHughNagumo1969Cell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of FitzHughNagumo1969Cell
createFitzHughNagumoCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of FitzHughNagumoCell
createFixedFactorConcentrationModel() - Method in class org.neuroml.model.ObjectFactory: Create an instance of FixedFactorConcentrationModel
createForwardTransition() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ForwardTransition
createGapJunction() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GapJunction
createGateFractional() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GateFractional
createGateFractionalSubgate() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GateFractionalSubgate
createGateHHInstantaneous() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GateHHInstantaneous
createGateHHRates() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GateHHRates
createGateHHRatesInf() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GateHHRatesInf
createGateHHRatesTau() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GateHHRatesTau
createGateHHRatesTauInf() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GateHHRatesTauInf
createGateHHTauInf() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GateHHTauInf
createGateHHUndetermined() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GateHHUndetermined
createGateKS() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GateKS
createGradedSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GradedSynapse
createGridLayout() - Method in class org.neuroml.model.ObjectFactory: Create an instance of GridLayout
createH5file(File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
createHHCondExp() - Method in class org.neuroml.model.ObjectFactory: Create an instance of HHCondExp
createHHRate() - Method in class org.neuroml.model.ObjectFactory: Create an instance of HHRate
createHHTime() - Method in class org.neuroml.model.ObjectFactory: Create an instance of HHTime
createHHVariable() - Method in class org.neuroml.model.ObjectFactory: Create an instance of HHVariable
createHindmarshRose1984Cell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of HindmarshRose1984Cell
createIafCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IafCell
createIafRefCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IafRefCell
createIafTauCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IafTauCell
createIafTauRefCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IafTauRefCell
createIFCondAlpha() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IFCondAlpha
createIFCondExp() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IFCondExp
createIFCurrAlpha() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IFCurrAlpha
createIFCurrExp() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IFCurrExp
createInclude() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Include
createIncludeType() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IncludeType
createInhomogeneousParameter() - Method in class org.neuroml.model.ObjectFactory: Create an instance of InhomogeneousParameter
createInhomogeneousValue() - Method in class org.neuroml.model.ObjectFactory: Create an instance of InhomogeneousValue
createInitMembPotential() - Method in class org.neuroml.model.ObjectFactory: Create an instance of InitMembPotential
createInput() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Input
createInputList() - Method in class org.neuroml.model.ObjectFactory: Create an instance of InputList
createInputW() - Method in class org.neuroml.model.ObjectFactory: Create an instance of InputW
createInstance() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Instance
createInstanceRequirement() - Method in class org.neuroml.model.ObjectFactory: Create an instance of InstanceRequirement
createIntracellularProperties() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IntracellularProperties
createIntracellularProperties2CaPools() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IntracellularProperties2CaPools
createIonChannel() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IonChannel
createIonChannelHH() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IonChannelHH
createIonChannelKS() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IonChannelKS
createIonChannelScalable() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IonChannelScalable
createIonChannelVShift() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IonChannelVShift
createIzhikevich2007Cell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Izhikevich2007Cell
createIzhikevichCell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of IzhikevichCell
createLayout() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Layout
createLEMSProperty() - Method in class org.neuroml.model.ObjectFactory: Create an instance of LEMSProperty
createLinearGradedSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of LinearGradedSynapse
createLocation() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Location
createMember() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Member
createMembraneProperties() - Method in class org.neuroml.model.ObjectFactory: Create an instance of MembraneProperties
createMembraneProperties2CaPools() - Method in class org.neuroml.model.ObjectFactory: Create an instance of MembraneProperties2CaPools
createMorphology() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Morphology
createNamedDimensionalType() - Method in class org.neuroml.model.ObjectFactory: Create an instance of NamedDimensionalType
createNamedDimensionalVariable() - Method in class org.neuroml.model.ObjectFactory: Create an instance of NamedDimensionalVariable
createNetwork() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Network
createNeuroml(NeuroMLDocument) - Method in class org.neuroml.model.ObjectFactory: Create an instance of JAXBElement<NeuroMLDocument>
createNeuroMLDocument() - Method in class org.neuroml.model.ObjectFactory: Create an instance of NeuroMLDocument
createNeuroMLH5file(NeuroMLDocument, File) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
createOnCondition() - Method in class org.neuroml.model.ObjectFactory: Create an instance of OnCondition
createOnEntry() - Method in class org.neuroml.model.ObjectFactory: Create an instance of OnEntry
createOnEvent() - Method in class org.neuroml.model.ObjectFactory: Create an instance of OnEvent
createOnStart() - Method in class org.neuroml.model.ObjectFactory: Create an instance of OnStart
createOpenState() - Method in class org.neuroml.model.ObjectFactory: Create an instance of OpenState
createParameter() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Parameter
createPath() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Path
createPinskyRinzelCA3Cell() - Method in class org.neuroml.model.ObjectFactory: Create an instance of PinskyRinzelCA3Cell
createPlasticityMechanism() - Method in class org.neuroml.model.ObjectFactory: Create an instance of PlasticityMechanism
createPoint3DWithDiam() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Point3DWithDiam
createPoissonFiringSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of PoissonFiringSynapse
createPopulation() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Population
createProjection() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Projection
createProperty() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Property
createProximalDetails() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ProximalDetails
createPulseGenerator() - Method in class org.neuroml.model.ObjectFactory: Create an instance of PulseGenerator
createPulseGeneratorDL() - Method in class org.neuroml.model.ObjectFactory: Create an instance of PulseGeneratorDL
createQ10ConductanceScaling() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Q10ConductanceScaling
createQ10Settings() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Q10Settings
createRampGenerator() - Method in class org.neuroml.model.ObjectFactory: Create an instance of RampGenerator
createRampGeneratorDL() - Method in class org.neuroml.model.ObjectFactory: Create an instance of RampGeneratorDL
createRandomLayout() - Method in class org.neuroml.model.ObjectFactory: Create an instance of RandomLayout
createReactionScheme() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ReactionScheme
createRegime() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Regime
createRegion() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Region
createRequirement() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Requirement
createResistivity() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Resistivity
createReverseTransition() - Method in class org.neuroml.model.ObjectFactory: Create an instance of ReverseTransition
createSegment() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Segment
createSegmentEndPoint() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SegmentEndPoint
createSegmentGroup() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SegmentGroup
createSegmentParent() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SegmentParent
createSilentSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SilentSynapse
createSineGenerator() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SineGenerator
createSineGeneratorDL() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SineGeneratorDL
createSpace() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Space
createSpaceStructure() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SpaceStructure
createSpecies() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Species
createSpecificCapacitance() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SpecificCapacitance
createSpike() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Spike
createSpikeArray() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SpikeArray
createSpikeGenerator() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SpikeGenerator
createSpikeGeneratorPoisson() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SpikeGeneratorPoisson
createSpikeGeneratorRandom() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SpikeGeneratorRandom
createSpikeGeneratorRefPoisson() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SpikeGeneratorRefPoisson
createSpikeSourcePoisson() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SpikeSourcePoisson
createSpikeThresh() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SpikeThresh
createStandalone() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Standalone
createStateAssignment() - Method in class org.neuroml.model.ObjectFactory: Create an instance of StateAssignment
createStateVariable() - Method in class org.neuroml.model.ObjectFactory: Create an instance of StateVariable
createSubTree() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SubTree
createSynapticConnection() - Method in class org.neuroml.model.ObjectFactory: Create an instance of SynapticConnection
createTauInfTransition() - Method in class org.neuroml.model.ObjectFactory: Create an instance of TauInfTransition
createTimeDerivative() - Method in class org.neuroml.model.ObjectFactory: Create an instance of TimeDerivative
createTimedSynapticInput() - Method in class org.neuroml.model.ObjectFactory: Create an instance of TimedSynapticInput
createTransientPoissonFiringSynapse() - Method in class org.neuroml.model.ObjectFactory: Create an instance of TransientPoissonFiringSynapse
createTransition() - Method in class org.neuroml.model.ObjectFactory: Create an instance of Transition
createUnstructuredLayout() - Method in class org.neuroml.model.ObjectFactory: Create an instance of UnstructuredLayout
createVariableParameter() - Method in class org.neuroml.model.ObjectFactory: Create an instance of VariableParameter
createVoltageClamp() - Method in class org.neuroml.model.ObjectFactory: Create an instance of VoltageClamp
createVoltageClampTriple() - Method in class org.neuroml.model.ObjectFactory: Create an instance of VoltageClampTriple

D

d - Variable in class org.neuroml.model.HindmarshRose1984Cell
d - Variable in class org.neuroml.model.Izhikevich2007Cell
d - Variable in class org.neuroml.model.IzhikevichCell
dataSet(Dataset) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
decayConstant - Variable in class org.neuroml.model.DecayingPoolConcentrationModel
decayConstant - Variable in class org.neuroml.model.FixedFactorConcentrationModel
decayingPoolConcentrationModel - Variable in class org.neuroml.model.NeuroMLDocument
DecayingPoolConcentrationModel - Class in org.neuroml.model: Model of an intracellular buffering mechanism for **ion** ( currently hard Coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** The ion is assumed to occupy a shell inside the membrane of thickness **shellThickness.** \n :param restingConc: :type restingConc: concentration :param decayConstant: :type decayConstant: time :param shellThickness: :type shellThickness: length
DecayingPoolConcentrationModel() - Constructor for class org.neuroml.model.DecayingPoolConcentrationModel
DEFAULT_SCHEMA_LOCATION_VERSION_2_0 - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_1 - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_2 - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_3 - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_3_1 - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_ALPHA - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA1 - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA2 - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA3 - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA4 - Static variable in class org.neuroml.model.util.NeuroMLElements
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA5 - Static variable in class org.neuroml.model.util.NeuroMLElements
defaultValue - Variable in class org.neuroml.model.LEMSProperty
delay - Variable in class org.neuroml.model.ConnectionWD
delay - Variable in class org.neuroml.model.PulseGenerator
delay - Variable in class org.neuroml.model.PulseGeneratorDL
delay - Variable in class org.neuroml.model.RampGenerator
delay - Variable in class org.neuroml.model.RampGeneratorDL
delay - Variable in class org.neuroml.model.SineGenerator
delay - Variable in class org.neuroml.model.SineGeneratorDL
delay - Variable in class org.neuroml.model.TransientPoissonFiringSynapse
delay - Variable in class org.neuroml.model.VoltageClamp
delay - Variable in class org.neuroml.model.VoltageClampTriple
delT - Variable in class org.neuroml.model.AdExIaFCell
delta - Variable in class org.neuroml.model.GradedSynapse
deltaT - Variable in class org.neuroml.model.EIFCondExpIsfaIsta
derivedParameter - Variable in class org.neuroml.model.ComponentType
DerivedParameter - Class in org.neuroml.model: LEMS DerivedParamter element
DerivedParameter() - Constructor for class org.neuroml.model.DerivedParameter
derivedVariable - Variable in class org.neuroml.model.Dynamics
DerivedVariable - Class in org.neuroml.model: LEMS ComponentType for DerivedVariable
DerivedVariable() - Constructor for class org.neuroml.model.DerivedVariable
description - Variable in class org.neuroml.model.ComponentType
description - Variable in class org.neuroml.model.Constant
description - Variable in class org.neuroml.model.Exposure
description - Variable in class org.neuroml.model.NamedDimensionalType
description - Variable in class org.neuroml.model.NamedDimensionalVariable
description - Variable in class org.neuroml.model.util.StandardTest
destination - Variable in class org.neuroml.model.ExplicitInput
destination - Variable in class org.neuroml.model.Input
destination - Variable in class org.neuroml.model.SynapticConnection
diameter - Variable in class org.neuroml.model.Point3DWithDiam
dimension - Variable in class org.neuroml.model.Constant
dimension - Variable in class org.neuroml.model.Exposure
dimension - Variable in class org.neuroml.model.NamedDimensionalType
dimension - Variable in class org.neuroml.model.NamedDimensionalVariable
distal - Variable in class org.neuroml.model.InhomogeneousParameter
distal - Variable in class org.neuroml.model.Segment
DistalDetails - Class in org.neuroml.model: What to do at the distal point when creating an inhomogeneous parameter
DistalDetails() - Constructor for class org.neuroml.model.DistalDetails
distance(Point3DWithDiam, Point3DWithDiam) - Static method in class org.neuroml.model.util.CellUtils
DOUBLE_SYNAPSE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
doubleSynapse - Variable in class org.neuroml.model.NeuroMLDocument
DoubleSynapse - Class in org.neuroml.model: Synapse consisting of two independent synaptic mechanisms ( e.
DoubleSynapse() - Constructor for class org.neuroml.model.DoubleSynapse
duration - Variable in class org.neuroml.model.PulseGenerator
duration - Variable in class org.neuroml.model.PulseGeneratorDL
duration - Variable in class org.neuroml.model.RampGenerator
duration - Variable in class org.neuroml.model.RampGeneratorDL
duration - Variable in class org.neuroml.model.SineGenerator
duration - Variable in class org.neuroml.model.SineGeneratorDL
duration - Variable in class org.neuroml.model.SpikeSourcePoisson
duration - Variable in class org.neuroml.model.TransientPoissonFiringSynapse
duration - Variable in class org.neuroml.model.VoltageClamp
duration - Variable in class org.neuroml.model.VoltageClampTriple
dynamics - Variable in class org.neuroml.model.ComponentType
Dynamics - Class in org.neuroml.model: LEMS ComponentType for Dynamics
Dynamics() - Constructor for class org.neuroml.model.Dynamics

E

eCa - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
eifCondAlphaIsfaIsta - Variable in class org.neuroml.model.NeuroMLDocument
EIFCondAlphaIsfaIsta - Class in org.neuroml.model: Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance \n :param v_spike: :type v_spike: none :param delta_T: :type delta_T: none :param tau_w: :type tau_w: none :param a: :type a: none :param b: :type b: none :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_E: none :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_I: none :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
EIFCondAlphaIsfaIsta() - Constructor for class org.neuroml.model.EIFCondAlphaIsfaIsta
eifCondExpIsfaIsta - Variable in class org.neuroml.model.NeuroMLDocument
EIFCondExpIsfaIsta - Class in org.neuroml.model: Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance \n :param v_spike: :type v_spike: none :param delta_T: :type delta_T: none :param tau_w: :type tau_w: none :param a: :type a: none :param b: :type b: none :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_E: none :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_I: none :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
EIFCondExpIsfaIsta() - Constructor for class org.neuroml.model.EIFCondExpIsfaIsta
ek - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
el - Variable in class org.neuroml.model.AdExIaFCell
el - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
ELECTRICAL_CONNECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
ELECTRICAL_CONNECTION_INSTANCE - Static variable in class org.neuroml.model.util.NeuroMLElements
ELECTRICAL_CONNECTION_INSTANCE_WEIGHT - Static variable in class org.neuroml.model.util.NeuroMLElements
ELECTRICAL_PROJECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
electricalConnection - Variable in class org.neuroml.model.ElectricalProjection
ElectricalConnection - Class in org.neuroml.model: To enable connections between populations through gap junctions.
ElectricalConnection() - Constructor for class org.neuroml.model.ElectricalConnection
electricalConnectionInstance - Variable in class org.neuroml.model.ElectricalProjection
ElectricalConnectionInstance - Class in org.neuroml.model: To enable connections between populations through gap junctions.
ElectricalConnectionInstance() - Constructor for class org.neuroml.model.ElectricalConnectionInstance
electricalConnectionInstanceW - Variable in class org.neuroml.model.ElectricalProjection
ElectricalConnectionInstanceW - Class in org.neuroml.model: To enable connections between populations through gap junctions.
ElectricalConnectionInstanceW() - Constructor for class org.neuroml.model.ElectricalConnectionInstanceW
electricalProjection - Variable in class org.neuroml.model.Network
ElectricalProjection - Class in org.neuroml.model: A projection between **presynapticPopulation** to another **postsynapticPopulation** through gap junctions.
ElectricalProjection() - Constructor for class org.neuroml.model.ElectricalProjection
eNa - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
endGroup(Group) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
erev - Variable in class org.neuroml.model.BaseConductanceBasedSynapse
erev - Variable in class org.neuroml.model.BaseConductanceBasedSynapseTwo
erev - Variable in class org.neuroml.model.ChannelDensity
erev - Variable in class org.neuroml.model.ChannelDensityNonUniform
erev - Variable in class org.neuroml.model.ChannelPopulation
erev - Variable in class org.neuroml.model.GradedSynapse
eRev - Variable in class org.neuroml.model.AlphaCondSynapse
eRev - Variable in class org.neuroml.model.ExpCondSynapse
eRevE - Variable in class org.neuroml.model.BasePyNNIaFCondCell
eRevE - Variable in class org.neuroml.model.HHCondExp
eRevI - Variable in class org.neuroml.model.BasePyNNIaFCondCell
eRevI - Variable in class org.neuroml.model.HHCondExp
eRevK - Variable in class org.neuroml.model.HHCondExp
eRevLeak - Variable in class org.neuroml.model.HHCondExp
eRevNa - Variable in class org.neuroml.model.HHCondExp
ERROR - Enum constant in enum org.neuroml.model.util.StandardTest.LEVEL
EUCLIDEAN_1_D - Enum constant in enum org.neuroml.model.AllowedSpaces
EUCLIDEAN_2_D - Enum constant in enum org.neuroml.model.AllowedSpaces
EUCLIDEAN_3_D - Enum constant in enum org.neuroml.model.AllowedSpaces
eventOut - Variable in class org.neuroml.model.OnCondition
eventOut - Variable in class org.neuroml.model.OnEvent
EventOut - Class in org.neuroml.model: Java class for EventOut complex type.
EventOut() - Constructor for class org.neuroml.model.EventOut
expCondSynapse - Variable in class org.neuroml.model.NeuroMLDocument
ExpCondSynapse - Class in org.neuroml.model: Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) \n :param e_rev: :type e_rev: none :param tau_syn: :type tau_syn: none
ExpCondSynapse() - Constructor for class org.neuroml.model.ExpCondSynapse
expCurrSynapse - Variable in class org.neuroml.model.NeuroMLDocument
ExpCurrSynapse - Class in org.neuroml.model: Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) \n :param tau_syn: :type tau_syn: none
ExpCurrSynapse() - Constructor for class org.neuroml.model.ExpCurrSynapse
experimentalTemp - Variable in class org.neuroml.model.Q10ConductanceScaling
experimentalTemp - Variable in class org.neuroml.model.Q10Settings
explicitInput - Variable in class org.neuroml.model.Network
ExplicitInput - Class in org.neuroml.model: An explicit input ( anything which extends **basePointCurrent** ) to a target cell in a population
ExplicitInput() - Constructor for class org.neuroml.model.ExplicitInput
expOneSynapse - Variable in class org.neuroml.model.NeuroMLDocument
ExpOneSynapse - Class in org.neuroml.model: Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** \n :param tauDecay: Time course of decay :type tauDecay: time :param gbase: Baseline conductance, generally the maximum conductance following a single spike :type gbase: conductance :param erev: Reversal potential of the synapse :type erev: voltage
ExpOneSynapse() - Constructor for class org.neuroml.model.ExpOneSynapse
exposure - Variable in class org.neuroml.model.ComponentType
exposure - Variable in class org.neuroml.model.NamedDimensionalVariable
Exposure - Class in org.neuroml.model: LEMS Exposure (ComponentType property)
Exposure() - Constructor for class org.neuroml.model.Exposure
expThreeSynapse - Variable in class org.neuroml.model.NeuroMLDocument
ExpThreeSynapse - Class in org.neuroml.model: Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
ExpThreeSynapse() - Constructor for class org.neuroml.model.ExpThreeSynapse
expTwoSynapse - Variable in class org.neuroml.model.NeuroMLDocument
ExpTwoSynapse - Class in org.neuroml.model: Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** \n :param tauRise: :type tauRise: time :param tauDecay: :type tauDecay: time :param gbase: Baseline conductance, generally the maximum conductance following a single spike :type gbase: conductance :param erev: Reversal potential of the synapse :type erev: voltage
ExpTwoSynapse() - Constructor for class org.neuroml.model.ExpTwoSynapse
extracellularProperties - Variable in class org.neuroml.model.BiophysicalProperties
extracellularProperties - Variable in class org.neuroml.model.BiophysicalProperties2CaPools
extracellularProperties - Variable in class org.neuroml.model.Network
extracellularProperties - Variable in class org.neuroml.model.NeuroMLDocument
extracellularProperties - Variable in class org.neuroml.model.Population
ExtracellularProperties - Class in org.neuroml.model: Java class for ExtracellularProperties complex type.
ExtracellularProperties() - Constructor for class org.neuroml.model.ExtracellularProperties
ExtracellularPropertiesLocal - Class in org.neuroml.model: Java class for ExtracellularPropertiesLocal complex type.
ExtracellularPropertiesLocal() - Constructor for class org.neuroml.model.ExtracellularPropertiesLocal

F

FALSE - Enum constant in enum org.neuroml.model.TrueOrFalse
finishAmplitude - Variable in class org.neuroml.model.RampGenerator
finishAmplitude - Variable in class org.neuroml.model.RampGeneratorDL
fitzHughNagumo1969Cell - Variable in class org.neuroml.model.NeuroMLDocument
FitzHughNagumo1969Cell - Class in org.neuroml.model: The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons.
FitzHughNagumo1969Cell() - Constructor for class org.neuroml.model.FitzHughNagumo1969Cell
fitzHughNagumoCell - Variable in class org.neuroml.model.NeuroMLDocument
FitzHughNagumoCell - Class in org.neuroml.model: Simple dimensionless model of spiking cell from FitzHugh and Nagumo.
FitzHughNagumoCell() - Constructor for class org.neuroml.model.FitzHughNagumoCell
fixedFactorConcentrationModel - Variable in class org.neuroml.model.NeuroMLDocument
FixedFactorConcentrationModel - Class in org.neuroml.model: Model of buffering of concentration of an ion ( currently hard coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** A fixed factor **rho** is used to scale the incoming current *independently of the size of the compartment* to produce a concentration change.
FixedFactorConcentrationModel() - Constructor for class org.neuroml.model.FixedFactorConcentrationModel
fixedQ10 - Variable in class org.neuroml.model.Q10Settings
forwardRate - Variable in class org.neuroml.model.GateHHRates
forwardRate - Variable in class org.neuroml.model.GateHHRatesInf
forwardRate - Variable in class org.neuroml.model.GateHHRatesTau
forwardRate - Variable in class org.neuroml.model.GateHHRatesTauInf
forwardRate - Variable in class org.neuroml.model.GateHHUndetermined
ForwardTransition - Class in org.neuroml.model: A forward only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
ForwardTransition() - Constructor for class org.neuroml.model.ForwardTransition
forwardTransitionAndReverseTransitionOrTauInfTransition - Variable in class org.neuroml.model.GateKS
fractionalConductance - Variable in class org.neuroml.model.GateFractionalSubgate
fractionAlong - Variable in class org.neuroml.model.Input
fractionAlong - Variable in class org.neuroml.model.SegmentParent
from - Variable in class org.neuroml.model.ForwardTransition
from - Variable in class org.neuroml.model.Path
from - Variable in class org.neuroml.model.ReverseTransition
from - Variable in class org.neuroml.model.SubTree
from - Variable in class org.neuroml.model.SynapticConnection
from - Variable in class org.neuroml.model.TauInfTransition
fromValue(String) - Static method in enum org.neuroml.model.AllowedSpaces
fromValue(String) - Static method in enum org.neuroml.model.BlockTypes
fromValue(String) - Static method in enum org.neuroml.model.ChannelTypes
fromValue(String) - Static method in enum org.neuroml.model.GateTypes
fromValue(String) - Static method in enum org.neuroml.model.Metric
fromValue(String) - Static method in enum org.neuroml.model.NetworkTypes
fromValue(String) - Static method in enum org.neuroml.model.PlasticityTypes
fromValue(String) - Static method in enum org.neuroml.model.PopulationTypes
fromValue(String) - Static method in enum org.neuroml.model.TrueOrFalse

G

gAmpa - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
GAP_JUNCTION - Static variable in class org.neuroml.model.util.NeuroMLElements
gapJunction - Variable in class org.neuroml.model.NeuroMLDocument
GapJunction - Class in org.neuroml.model: Gap junction/single electrical connection \n :param conductance: :type conductance: conductance
GapJunction() - Constructor for class org.neuroml.model.GapJunction
gate - Variable in class org.neuroml.model.IonChannel
GATE_FRACTIONAL - Enum constant in enum org.neuroml.model.GateTypes
GATE_H_HRATES - Enum constant in enum org.neuroml.model.GateTypes
GATE_H_HRATES_INF - Enum constant in enum org.neuroml.model.GateTypes
GATE_H_HRATES_TAU - Enum constant in enum org.neuroml.model.GateTypes
GATE_H_HRATES_TAU_INF - Enum constant in enum org.neuroml.model.GateTypes
GATE_H_HTAU_INF - Enum constant in enum org.neuroml.model.GateTypes
GATE_HH_INSTANTANEOUS - Enum constant in enum org.neuroml.model.GateTypes
GATE_KS - Enum constant in enum org.neuroml.model.GateTypes
gateFractional - Variable in class org.neuroml.model.IonChannel
GateFractional - Class in org.neuroml.model: Gate composed of subgates contributing with fractional conductance \n :param instances: :type instances: none
GateFractional() - Constructor for class org.neuroml.model.GateFractional
GateFractionalSubgate - Class in org.neuroml.model: Java class for GateFractionalSubgate complex type.
GateFractionalSubgate() - Constructor for class org.neuroml.model.GateFractionalSubgate
gateHHInstantaneous - Variable in class org.neuroml.model.IonChannel
GateHHInstantaneous - Class in org.neuroml.model: Gate which follows the general Hodgkin Huxley formalism but is instantaneous, so tau = 0 and gate follows exactly inf value \n :param instances: :type instances: none
GateHHInstantaneous() - Constructor for class org.neuroml.model.GateHHInstantaneous
gateHHrates - Variable in class org.neuroml.model.IonChannel
GateHHRates - Class in org.neuroml.model: Gate which follows the general Hodgkin Huxley formalism \n :param instances: :type instances: none
GateHHRates() - Constructor for class org.neuroml.model.GateHHRates
gateHHratesInf - Variable in class org.neuroml.model.IonChannel
GateHHRatesInf - Class in org.neuroml.model: Gate which follows the general Hodgkin Huxley formalism \n :param instances: :type instances: none
GateHHRatesInf() - Constructor for class org.neuroml.model.GateHHRatesInf
gateHHratesTau - Variable in class org.neuroml.model.IonChannel
GateHHRatesTau - Class in org.neuroml.model: Gate which follows the general Hodgkin Huxley formalism \n :param instances: :type instances: none
GateHHRatesTau() - Constructor for class org.neuroml.model.GateHHRatesTau
gateHHratesTauInf - Variable in class org.neuroml.model.IonChannel
GateHHRatesTauInf - Class in org.neuroml.model: Gate which follows the general Hodgkin Huxley formalism \n :param instances: :type instances: none
GateHHRatesTauInf() - Constructor for class org.neuroml.model.GateHHRatesTauInf
gateHHtauInf - Variable in class org.neuroml.model.IonChannel
GateHHTauInf - Class in org.neuroml.model: Gate which follows the general Hodgkin Huxley formalism \n :param instances: :type instances: none
GateHHTauInf() - Constructor for class org.neuroml.model.GateHHTauInf
GateHHUndetermined - Class in org.neuroml.model: Note all sub elements for gateHHrates, gateHHratesTau, gateFractional etc.
GateHHUndetermined() - Constructor for class org.neuroml.model.GateHHUndetermined
gateKS - Variable in class org.neuroml.model.IonChannelKS
GateKS - Class in org.neuroml.model: A gate which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them \n :param instances: :type instances: none
GateKS() - Constructor for class org.neuroml.model.GateKS
GateTypes - Enum in org.neuroml.model: Java class for gateTypes.
gbarK - Variable in class org.neuroml.model.HHCondExp
gbarNa - Variable in class org.neuroml.model.HHCondExp
gbase - Variable in class org.neuroml.model.BaseConductanceBasedSynapse
gbase1 - Variable in class org.neuroml.model.BaseConductanceBasedSynapseTwo
gbase2 - Variable in class org.neuroml.model.BaseConductanceBasedSynapseTwo
gc - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
gCa - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
getA() - Method in class org.neuroml.model.AdExIaFCell: Gets the value of the a property.
getA() - Method in class org.neuroml.model.EIFCondExpIsfaIsta: Gets the value of the a property.
getA() - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Gets the value of the a property.
getA() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the a property.
getA() - Method in class org.neuroml.model.Izhikevich2007Cell: Gets the value of the a property.
getA() - Method in class org.neuroml.model.IzhikevichCell: Gets the value of the a property.
getActive() - Method in class org.neuroml.model.VoltageClampTriple: Gets the value of the active property.
getAdExIaFCell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the adExIaFCell property.
getAllStandaloneElements(NeuroMLDocument) - Static method in class org.neuroml.model.util.NeuroMLConverter
getAlphac() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the alphac property.
getAlphaCondSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the alphaCondSynapse property.
getAlphaCurrentSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the alphaCurrentSynapse property.
getAlphaCurrSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the alphaCurrSynapse property.
getAlphaSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the alphaSynapse property.
getAmplitude() - Method in class org.neuroml.model.PulseGenerator: Gets the value of the amplitude property.
getAmplitude() - Method in class org.neuroml.model.PulseGeneratorDL: Gets the value of the amplitude property.
getAmplitude() - Method in class org.neuroml.model.SineGenerator: Gets the value of the amplitude property.
getAmplitude() - Method in class org.neuroml.model.SineGeneratorDL: Gets the value of the amplitude property.
getAnnotation() - Method in class org.neuroml.model.SegmentGroup: Gets the value of the annotation property.
getAnnotation() - Method in class org.neuroml.model.Standalone: Gets the value of the annotation property.
getAny() - Method in class org.neuroml.model.Annotation: Gets the value of the any property.
getAny() - Method in class org.neuroml.model.CellSet: Gets the value of the any property.
getAny() - Method in class org.neuroml.model.ForwardTransition: Gets the value of the any property.
getAny() - Method in class org.neuroml.model.ReactionScheme: Gets the value of the any property.
getAny() - Method in class org.neuroml.model.Region: Gets the value of the any property.
getAny() - Method in class org.neuroml.model.ReverseTransition: Gets the value of the any property.
getAverageRate() - Method in class org.neuroml.model.PoissonFiringSynapse: Gets the value of the averageRate property.
getAverageRate() - Method in class org.neuroml.model.SpikeGeneratorPoisson: Gets the value of the averageRate property.
getAverageRate() - Method in class org.neuroml.model.TransientPoissonFiringSynapse: Gets the value of the averageRate property.
getB() - Method in class org.neuroml.model.AdExIaFCell: Gets the value of the b property.
getB() - Method in class org.neuroml.model.EIFCondExpIsfaIsta: Gets the value of the b property.
getB() - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Gets the value of the b property.
getB() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the b property.
getB() - Method in class org.neuroml.model.Izhikevich2007Cell: Gets the value of the b property.
getB() - Method in class org.neuroml.model.IzhikevichCell: Gets the value of the b property.
getBaseCell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the baseCell property.
getBasedOn() - Method in class org.neuroml.model.Space: Gets the value of the basedOn property.
getBaselineAmplitude() - Method in class org.neuroml.model.RampGenerator: Gets the value of the baselineAmplitude property.
getBaselineAmplitude() - Method in class org.neuroml.model.RampGeneratorDL: Gets the value of the baselineAmplitude property.
getBetac() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the betac property.
getBiophysicalProperties() - Method in class org.neuroml.model.Cell: Gets the value of the biophysicalProperties property.
getBiophysicalProperties() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the biophysicalProperties property.
getBiophysicalProperties2CaPools() - Method in class org.neuroml.model.Cell2CaPools: Gets the value of the biophysicalProperties2CaPools property.
getBiophysicalPropertiesAttr() - Method in class org.neuroml.model.Cell: Gets the value of the biophysicalPropertiesAttr property.
getBlockConcentration() - Method in class org.neuroml.model.BlockMechanism: Gets the value of the blockConcentration property.
getBlockingPlasticSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the blockingPlasticSynapse property.
getBlockMechanism() - Method in class org.neuroml.model.BlockingPlasticSynapse: Gets the value of the blockMechanism property.
getC() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the c property.
getC() - Method in class org.neuroml.model.IafCell: Gets the value of the c property.
getC() - Method in class org.neuroml.model.Izhikevich2007Cell: Gets the value of the c property.
getC() - Method in class org.neuroml.model.IzhikevichCell: Gets the value of the c property.
getCap() - Method in class org.neuroml.model.BaseCellMembPotCap: Gets the value of the cap property.
getCase() - Method in class org.neuroml.model.ConditionalDerivedVariable: Gets the value of the case property.
getCell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the cell property.
getCell2CaPools() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the cell2CaPools property.
getCellBiophysicalProperties(Cell, NeuroMLDocument) - Static method in class org.neuroml.model.util.CellUtils
getCellMorphology(Cell, NeuroMLDocument) - Static method in class org.neuroml.model.util.CellUtils
getCellSet() - Method in class org.neuroml.model.Network: Gets the value of the cellSet property.
getChannelDensity() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the channelDensity property.
getChannelDensityGHK() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the channelDensityGHK property.
getChannelDensityGHK2() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the channelDensityGHK2 property.
getChannelDensityNernst() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the channelDensityNernst property.
getChannelDensityNernstCa2() - Method in class org.neuroml.model.MembraneProperties2CaPools: Gets the value of the channelDensityNernstCa2 property.
getChannelDensityNonUniform() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the channelDensityNonUniform property.
getChannelDensityNonUniformGHK() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the channelDensityNonUniformGHK property.
getChannelDensityNonUniformNernst() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the channelDensityNonUniformNernst property.
getChannelDensityVShift() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the channelDensityVShift property.
getChannelPopulation() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the channelPopulation property.
getClosedState() - Method in class org.neuroml.model.GateKS: Gets the value of the closedState property.
getCm() - Method in class org.neuroml.model.BasePyNNCell: Gets the value of the cm property.
getCm() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the cm property.
getComponent() - Method in class org.neuroml.model.InputList: Gets the value of the component property.
getComponent() - Method in class org.neuroml.model.Population: Gets the value of the component property.
getComponentType() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the componentType property.
getCompoundInput() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the compoundInput property.
getCompoundInputDL() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the compoundInputDL property.
getConcentrationModel() - Method in class org.neuroml.model.Species: Gets the value of the concentrationModel property.
getCondDensity() - Method in class org.neuroml.model.ChannelDensity: Gets the value of the condDensity property.
getCondDensity() - Method in class org.neuroml.model.ChannelDensityGHK2: Gets the value of the condDensity property.
getCondDensity() - Method in class org.neuroml.model.ChannelDensityNernst: Gets the value of the condDensity property.
getCondition() - Method in class org.neuroml.model.Case: Gets the value of the condition property.
getConditionalDerivedVariable() - Method in class org.neuroml.model.Dynamics: Gets the value of the conditionalDerivedVariable property.
getConditioningVoltage() - Method in class org.neuroml.model.VoltageClampTriple: Gets the value of the conditioningVoltage property.
getConductance() - Method in class org.neuroml.model.GapJunction: Gets the value of the conductance property.
getConductance() - Method in class org.neuroml.model.GradedSynapse: Gets the value of the conductance property.
getConductance() - Method in class org.neuroml.model.IonChannel: Gets the value of the conductance property.
getConductance() - Method in class org.neuroml.model.IonChannelKS: Gets the value of the conductance property.
getConductance() - Method in class org.neuroml.model.LinearGradedSynapse: Gets the value of the conductance property.
getConnection() - Method in class org.neuroml.model.Projection: Gets the value of the connection property.
getConnection(String, int) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
getConnectionWD() - Method in class org.neuroml.model.Projection: Gets the value of the connectionWD property.
getConstant() - Method in class org.neuroml.model.ComponentType: Gets the value of the constant property.
getContinuousConnection() - Method in class org.neuroml.model.ContinuousProjection: Gets the value of the continuousConnection property.
getContinuousConnectionInstance() - Method in class org.neuroml.model.ContinuousProjection: Gets the value of the continuousConnectionInstance property.
getContinuousConnectionInstanceW() - Method in class org.neuroml.model.ContinuousProjection: Gets the value of the continuousConnectionInstanceW property.
getContinuousProjection() - Method in class org.neuroml.model.Network: Gets the value of the continuousProjection property.
getD() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the d property.
getD() - Method in class org.neuroml.model.Izhikevich2007Cell: Gets the value of the d property.
getD() - Method in class org.neuroml.model.IzhikevichCell: Gets the value of the d property.
getDecayConstant() - Method in class org.neuroml.model.DecayingPoolConcentrationModel: Gets the value of the decayConstant property.
getDecayConstant() - Method in class org.neuroml.model.FixedFactorConcentrationModel: Gets the value of the decayConstant property.
getDecayingPoolConcentrationModel() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the decayingPoolConcentrationModel property.
getDefaultValue() - Method in class org.neuroml.model.LEMSProperty: Gets the value of the defaultValue property.
getDelay() - Method in class org.neuroml.model.ConnectionWD: Gets the value of the delay property.
getDelay() - Method in class org.neuroml.model.PulseGenerator: Gets the value of the delay property.
getDelay() - Method in class org.neuroml.model.PulseGeneratorDL: Gets the value of the delay property.
getDelay() - Method in class org.neuroml.model.RampGenerator: Gets the value of the delay property.
getDelay() - Method in class org.neuroml.model.RampGeneratorDL: Gets the value of the delay property.
getDelay() - Method in class org.neuroml.model.SineGenerator: Gets the value of the delay property.
getDelay() - Method in class org.neuroml.model.SineGeneratorDL: Gets the value of the delay property.
getDelay() - Method in class org.neuroml.model.TransientPoissonFiringSynapse: Gets the value of the delay property.
getDelay() - Method in class org.neuroml.model.VoltageClamp: Gets the value of the delay property.
getDelay() - Method in class org.neuroml.model.VoltageClampTriple: Gets the value of the delay property.
getDelT() - Method in class org.neuroml.model.AdExIaFCell: Gets the value of the delT property.
getDelta() - Method in class org.neuroml.model.GradedSynapse: Gets the value of the delta property.
getDeltaT() - Method in class org.neuroml.model.EIFCondExpIsfaIsta: Gets the value of the deltaT property.
getDerivedParameter() - Method in class org.neuroml.model.ComponentType: Gets the value of the derivedParameter property.
getDerivedVariable() - Method in class org.neuroml.model.Dynamics: Gets the value of the derivedVariable property.
getDescription() - Method in class org.neuroml.model.ComponentType: Gets the value of the description property.
getDescription() - Method in class org.neuroml.model.Constant: Gets the value of the description property.
getDescription() - Method in class org.neuroml.model.Exposure: Gets the value of the description property.
getDescription() - Method in class org.neuroml.model.NamedDimensionalType: Gets the value of the description property.
getDescription() - Method in class org.neuroml.model.NamedDimensionalVariable: Gets the value of the description property.
getDestination() - Method in class org.neuroml.model.ExplicitInput: Gets the value of the destination property.
getDestination() - Method in class org.neuroml.model.Input: Gets the value of the destination property.
getDestination() - Method in class org.neuroml.model.SynapticConnection: Gets the value of the destination property.
getDiameter() - Method in class org.neuroml.model.Point3DWithDiam: Gets the value of the diameter property.
getDimension() - Method in class org.neuroml.model.Constant: Gets the value of the dimension property.
getDimension() - Method in class org.neuroml.model.Exposure: Gets the value of the dimension property.
getDimension() - Method in class org.neuroml.model.NamedDimensionalType: Gets the value of the dimension property.
getDimension() - Method in class org.neuroml.model.NamedDimensionalVariable: Gets the value of the dimension property.
getDistal() - Method in class org.neuroml.model.InhomogeneousParameter: Gets the value of the distal property.
getDistal() - Method in class org.neuroml.model.Segment: Gets the value of the distal property.
getDoubleSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the doubleSynapse property.
getDuration() - Method in class org.neuroml.model.PulseGenerator: Gets the value of the duration property.
getDuration() - Method in class org.neuroml.model.PulseGeneratorDL: Gets the value of the duration property.
getDuration() - Method in class org.neuroml.model.RampGenerator: Gets the value of the duration property.
getDuration() - Method in class org.neuroml.model.RampGeneratorDL: Gets the value of the duration property.
getDuration() - Method in class org.neuroml.model.SineGenerator: Gets the value of the duration property.
getDuration() - Method in class org.neuroml.model.SineGeneratorDL: Gets the value of the duration property.
getDuration() - Method in class org.neuroml.model.SpikeSourcePoisson: Gets the value of the duration property.
getDuration() - Method in class org.neuroml.model.TransientPoissonFiringSynapse: Gets the value of the duration property.
getDuration() - Method in class org.neuroml.model.VoltageClamp: Gets the value of the duration property.
getDuration() - Method in class org.neuroml.model.VoltageClampTriple: Gets the value of the duration property.
getDynamics() - Method in class org.neuroml.model.ComponentType: Gets the value of the dynamics property.
getECa() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the eCa property.
getEIFCondAlphaIsfaIsta() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the eifCondAlphaIsfaIsta property.
getEIFCondExpIsfaIsta() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the eifCondExpIsfaIsta property.
getEK() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the ek property.
getEL() - Method in class org.neuroml.model.AdExIaFCell: Gets the value of the el property.
getEL() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the el property.
getElectricalConnection() - Method in class org.neuroml.model.ElectricalProjection: Gets the value of the electricalConnection property.
getElectricalConnectionInstance() - Method in class org.neuroml.model.ElectricalProjection: Gets the value of the electricalConnectionInstance property.
getElectricalConnectionInstanceW() - Method in class org.neuroml.model.ElectricalProjection: Gets the value of the electricalConnectionInstanceW property.
getElectricalProjection() - Method in class org.neuroml.model.Network: Gets the value of the electricalProjection property.
getENa() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the eNa property.
getErev() - Method in class org.neuroml.model.BaseConductanceBasedSynapse: Gets the value of the erev property.
getErev() - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo: Gets the value of the erev property.
getErev() - Method in class org.neuroml.model.ChannelDensity: Gets the value of the erev property.
getErev() - Method in class org.neuroml.model.ChannelDensityNonUniform: Gets the value of the erev property.
getErev() - Method in class org.neuroml.model.ChannelPopulation: Gets the value of the erev property.
getErev() - Method in class org.neuroml.model.GradedSynapse: Gets the value of the erev property.
getERev() - Method in class org.neuroml.model.AlphaCondSynapse: Gets the value of the eRev property.
getERev() - Method in class org.neuroml.model.ExpCondSynapse: Gets the value of the eRev property.
getERevE() - Method in class org.neuroml.model.BasePyNNIaFCondCell: Gets the value of the eRevE property.
getERevE() - Method in class org.neuroml.model.HHCondExp: Gets the value of the eRevE property.
getERevI() - Method in class org.neuroml.model.BasePyNNIaFCondCell: Gets the value of the eRevI property.
getERevI() - Method in class org.neuroml.model.HHCondExp: Gets the value of the eRevI property.
getERevK() - Method in class org.neuroml.model.HHCondExp: Gets the value of the eRevK property.
getERevLeak() - Method in class org.neuroml.model.HHCondExp: Gets the value of the eRevLeak property.
getERevNa() - Method in class org.neuroml.model.HHCondExp: Gets the value of the eRevNa property.
getEventOut() - Method in class org.neuroml.model.OnCondition: Gets the value of the eventOut property.
getEventOut() - Method in class org.neuroml.model.OnEvent: Gets the value of the eventOut property.
getExpCondSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the expCondSynapse property.
getExpCurrSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the expCurrSynapse property.
getExperimentalTemp() - Method in class org.neuroml.model.Q10ConductanceScaling: Gets the value of the experimentalTemp property.
getExperimentalTemp() - Method in class org.neuroml.model.Q10Settings: Gets the value of the experimentalTemp property.
getExplicitInput() - Method in class org.neuroml.model.Network: Gets the value of the explicitInput property.
getExpOneSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the expOneSynapse property.
getExposure() - Method in class org.neuroml.model.ComponentType: Gets the value of the exposure property.
getExposure() - Method in class org.neuroml.model.NamedDimensionalVariable: Gets the value of the exposure property.
getExpThreeSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the expThreeSynapse property.
getExpTwoSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the expTwoSynapse property.
getExtends() - Method in class org.neuroml.model.ComponentType: Gets the value of the extends property.
getExtracellularProperties() - Method in class org.neuroml.model.BiophysicalProperties: Gets the value of the extracellularProperties property.
getExtracellularProperties() - Method in class org.neuroml.model.BiophysicalProperties2CaPools: Gets the value of the extracellularProperties property.
getExtracellularProperties() - Method in class org.neuroml.model.Network: Gets the value of the extracellularProperties property.
getExtracellularProperties() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the extracellularProperties property.
getExtracellularProperties() - Method in class org.neuroml.model.Population: Gets the value of the extracellularProperties property.
getFinishAmplitude() - Method in class org.neuroml.model.RampGenerator: Gets the value of the finishAmplitude property.
getFinishAmplitude() - Method in class org.neuroml.model.RampGeneratorDL: Gets the value of the finishAmplitude property.
getFirstStringValAttr(ArrayList<Attribute>, String) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
getFitzHughNagumo1969Cell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the fitzHughNagumo1969Cell property.
getFitzHughNagumoCell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the fitzHughNagumoCell property.
getFixedFactorConcentrationModel() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the fixedFactorConcentrationModel property.
getFixedQ10() - Method in class org.neuroml.model.Q10Settings: Gets the value of the fixedQ10 property.
getFormattedUnits(String) - Static method in class org.neuroml.model.util.UnitsFormatterUtils
getForwardRate() - Method in class org.neuroml.model.GateHHRates: Gets the value of the forwardRate property.
getForwardRate() - Method in class org.neuroml.model.GateHHRatesInf: Gets the value of the forwardRate property.
getForwardRate() - Method in class org.neuroml.model.GateHHRatesTau: Gets the value of the forwardRate property.
getForwardRate() - Method in class org.neuroml.model.GateHHRatesTauInf: Gets the value of the forwardRate property.
getForwardRate() - Method in class org.neuroml.model.GateHHUndetermined: Gets the value of the forwardRate property.
getForwardTransitionAndReverseTransitionOrTauInfTransition() - Method in class org.neuroml.model.GateKS: Gets the value of the forwardTransitionAndReverseTransitionOrTauInfTransition property.
getFractionalConductance() - Method in class org.neuroml.model.GateFractionalSubgate: Gets the value of the fractionalConductance property.
getFractionAlong() - Method in class org.neuroml.model.Input: Gets the value of the fractionAlong property.
getFractionAlong() - Method in class org.neuroml.model.SegmentParent: Gets the value of the fractionAlong property.
getFractionAlong(Input) - Static method in class org.neuroml.model.util.NeuroMLConverter
getFractionAlongSegGroupLength(Cell, String, int, float) - Static method in class org.neuroml.model.util.CellUtils
getFractionAlongSegGroupLength(Cell, NeuroMLDocument, String, int, float) - Static method in class org.neuroml.model.util.CellUtils
getFrom() - Method in class org.neuroml.model.ForwardTransition: Gets the value of the from property.
getFrom() - Method in class org.neuroml.model.Path: Gets the value of the from property.
getFrom() - Method in class org.neuroml.model.ReverseTransition: Gets the value of the from property.
getFrom() - Method in class org.neuroml.model.SubTree: Gets the value of the from property.
getFrom() - Method in class org.neuroml.model.SynapticConnection: Gets the value of the from property.
getFrom() - Method in class org.neuroml.model.TauInfTransition: Gets the value of the from property.
getGAmpa() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the gAmpa property.
getGapJunction() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the gapJunction property.
getGate() - Method in class org.neuroml.model.IonChannel: Gets the value of the gate property.
getGateFractional() - Method in class org.neuroml.model.IonChannel: Gets the value of the gateFractional property.
getGateHHInstantaneous() - Method in class org.neuroml.model.IonChannel: Gets the value of the gateHHInstantaneous property.
getGateHHrates() - Method in class org.neuroml.model.IonChannel: Gets the value of the gateHHrates property.
getGateHHratesInf() - Method in class org.neuroml.model.IonChannel: Gets the value of the gateHHratesInf property.
getGateHHratesTau() - Method in class org.neuroml.model.IonChannel: Gets the value of the gateHHratesTau property.
getGateHHratesTauInf() - Method in class org.neuroml.model.IonChannel: Gets the value of the gateHHratesTauInf property.
getGateHHtauInf() - Method in class org.neuroml.model.IonChannel: Gets the value of the gateHHtauInf property.
getGateKS() - Method in class org.neuroml.model.IonChannelKS: Gets the value of the gateKS property.
getGbarK() - Method in class org.neuroml.model.HHCondExp: Gets the value of the gbarK property.
getGbarNa() - Method in class org.neuroml.model.HHCondExp: Gets the value of the gbarNa property.
getGbase() - Method in class org.neuroml.model.BaseConductanceBasedSynapse: Gets the value of the gbase property.
getGbase1() - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo: Gets the value of the gbase1 property.
getGbase2() - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo: Gets the value of the gbase2 property.
getGc() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the gc property.
getGCa() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the gCa property.
getGKahp() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the gKahp property.
getGKC() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the gkc property.
getGKdr() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the gKdr property.
getGL() - Method in class org.neuroml.model.AdExIaFCell: Gets the value of the gl property.
getGLd() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the gLd property.
getGLeak() - Method in class org.neuroml.model.HHCondExp: Gets the value of the gLeak property.
getGLs() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the gLs property.
getGNa() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the gNa property.
getGNmda() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the gNmda property.
getGradedSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the gradedSynapse property.
getGrid() - Method in class org.neuroml.model.Layout: Gets the value of the grid property.
getHHCondExp() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the hhCondExp property.
getHindmarshRose1984Cell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the hindmarshRose1984Cell property.
getHref() - Method in class org.neuroml.model.IncludeType: Gets the value of the href property.
getI() - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Gets the value of the i property.
getI() - Method in class org.neuroml.model.FitzHughNagumoCell: Gets the value of the i property.
getI() - Method in class org.neuroml.model.Instance: Gets the value of the i property.
getIafCell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the iafCell property.
getIafRefCell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the iafRefCell property.
getIafTauCell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the iafTauCell property.
getIafTauRefCell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the iafTauRefCell property.
getIbase() - Method in class org.neuroml.model.AlphaCurrentSynapse: Gets the value of the ibase property.
getId() - Method in class org.neuroml.model.Base: Gets the value of the id property.
getId() - Method in class org.neuroml.model.BaseNonNegativeIntegerId: Gets the value of the id property.
getId() - Method in class org.neuroml.model.Instance: Gets the value of the id property.
getIDend() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the iDend property.
getIdsVsSegments(Cell) - Static method in class org.neuroml.model.util.CellUtils: Deprecated.
use getIdsVsSegments(Cell cell, NeuroMLDocument nml2doc) instead.
getIdsVsSegments(Cell, NeuroMLDocument) - Static method in class org.neuroml.model.util.CellUtils
getIFCondAlpha() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the ifCondAlpha property.
getIFCondExp() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the ifCondExp property.
getIFCurrAlpha() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the ifCurrAlpha property.
getIFCurrExp() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the ifCurrExp property.
getInclude() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the include property.
getInclude() - Method in class org.neuroml.model.SegmentGroup: Gets the value of the include property.
getInhomogeneousParameter() - Method in class org.neuroml.model.InhomogeneousValue: Gets the value of the inhomogeneousParameter property.
getInhomogeneousParameter() - Method in class org.neuroml.model.SegmentGroup: Gets the value of the inhomogeneousParameter property.
getInhomogeneousValue() - Method in class org.neuroml.model.VariableParameter: Gets the value of the inhomogeneousValue property.
getInitial() - Method in class org.neuroml.model.Regime: Gets the value of the initial property.
getInitialConcentration() - Method in class org.neuroml.model.Species: Gets the value of the initialConcentration property.
getInitialExtConcentration() - Method in class org.neuroml.model.Species: Gets the value of the initialExtConcentration property.
getInitMembPotential() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the initMembPotential property.
getInitReleaseProb() - Method in class org.neuroml.model.PlasticityMechanism: Gets the value of the initReleaseProb property.
getInput() - Method in class org.neuroml.model.ExplicitInput: Gets the value of the input property.
getInput() - Method in class org.neuroml.model.InputList: Gets the value of the input property.
getInputDatatype(H5File) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
getInputList() - Method in class org.neuroml.model.Network: Gets the value of the inputList property.
getInputW() - Method in class org.neuroml.model.InputList: Gets the value of the inputW property.
getInstance() - Method in class org.neuroml.model.Population: Gets the value of the instance property.
getInstanceRequirement() - Method in class org.neuroml.model.ComponentType: Gets the value of the instanceRequirement property.
getInstances() - Method in class org.neuroml.model.GateFractional: Gets the value of the instances property.
getInstances() - Method in class org.neuroml.model.GateHHInstantaneous: Gets the value of the instances property.
getInstances() - Method in class org.neuroml.model.GateHHRates: Gets the value of the instances property.
getInstances() - Method in class org.neuroml.model.GateHHRatesInf: Gets the value of the instances property.
getInstances() - Method in class org.neuroml.model.GateHHRatesTau: Gets the value of the instances property.
getInstances() - Method in class org.neuroml.model.GateHHRatesTauInf: Gets the value of the instances property.
getInstances() - Method in class org.neuroml.model.GateHHTauInf: Gets the value of the instances property.
getInstances() - Method in class org.neuroml.model.GateHHUndetermined: Gets the value of the instances property.
getInstances() - Method in class org.neuroml.model.GateKS: Gets the value of the instances property.
getIntracellularProperties() - Method in class org.neuroml.model.BiophysicalProperties: Gets the value of the intracellularProperties property.
getIntracellularProperties() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the intracellularProperties property.
getIntracellularProperties2CaPools() - Method in class org.neuroml.model.BiophysicalProperties2CaPools: Gets the value of the intracellularProperties2CaPools property.
getIOffset() - Method in class org.neuroml.model.BasePyNNCell: Gets the value of the iOffset property.
getIon() - Method in class org.neuroml.model.ChannelDensity: Gets the value of the ion property.
getIon() - Method in class org.neuroml.model.ChannelDensityGHK: Gets the value of the ion property.
getIon() - Method in class org.neuroml.model.ChannelDensityGHK2: Gets the value of the ion property.
getIon() - Method in class org.neuroml.model.ChannelDensityNernst: Gets the value of the ion property.
getIon() - Method in class org.neuroml.model.ChannelDensityNonUniform: Gets the value of the ion property.
getIon() - Method in class org.neuroml.model.ChannelDensityNonUniformGHK: Gets the value of the ion property.
getIon() - Method in class org.neuroml.model.ChannelDensityNonUniformNernst: Gets the value of the ion property.
getIon() - Method in class org.neuroml.model.ChannelPopulation: Gets the value of the ion property.
getIon() - Method in class org.neuroml.model.DecayingPoolConcentrationModel: Gets the value of the ion property.
getIon() - Method in class org.neuroml.model.FixedFactorConcentrationModel: Gets the value of the ion property.
getIon() - Method in class org.neuroml.model.Species: Gets the value of the ion property.
getIonChannel() - Method in class org.neuroml.model.ChannelDensity: Gets the value of the ionChannel property.
getIonChannel() - Method in class org.neuroml.model.ChannelDensityGHK: Gets the value of the ionChannel property.
getIonChannel() - Method in class org.neuroml.model.ChannelDensityGHK2: Gets the value of the ionChannel property.
getIonChannel() - Method in class org.neuroml.model.ChannelDensityNernst: Gets the value of the ionChannel property.
getIonChannel() - Method in class org.neuroml.model.ChannelDensityNonUniform: Gets the value of the ionChannel property.
getIonChannel() - Method in class org.neuroml.model.ChannelDensityNonUniformGHK: Gets the value of the ionChannel property.
getIonChannel() - Method in class org.neuroml.model.ChannelDensityNonUniformNernst: Gets the value of the ionChannel property.
getIonChannel() - Method in class org.neuroml.model.ChannelPopulation: Gets the value of the ionChannel property.
getIonChannel() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the ionChannel property.
getIonChannelHH() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the ionChannelHH property.
getIonChannelKS() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the ionChannelKS property.
getIonChannelVShift() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the ionChannelVShift property.
getISoma() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the iSoma property.
getIzhikevich2007Cell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the izhikevich2007Cell property.
getIzhikevichCell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the izhikevichCell property.
getJ() - Method in class org.neuroml.model.Instance: Gets the value of the j property.
getK() - Method in class org.neuroml.model.GradedSynapse: Gets the value of the k property.
getK() - Method in class org.neuroml.model.Instance: Gets the value of the k property.
getK() - Method in class org.neuroml.model.Izhikevich2007Cell: Gets the value of the k property.
getLayout() - Method in class org.neuroml.model.Population: Gets the value of the layout property.
getLeakConductance() - Method in class org.neuroml.model.IafCell: Gets the value of the leakConductance property.
getLeakReversal() - Method in class org.neuroml.model.IafCell: Gets the value of the leakReversal property.
getLeakReversal() - Method in class org.neuroml.model.IafTauCell: Gets the value of the leakReversal property.
getLinearGradedSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the linearGradedSynapse property.
getLocation() - Method in class org.neuroml.model.Instance: Gets the value of the location property.
getLocation(String, int, boolean) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
getMaxISI() - Method in class org.neuroml.model.SpikeGeneratorRandom: Gets the value of the maxISI property.
getMember() - Method in class org.neuroml.model.SegmentGroup: Gets the value of the member property.
getMembraneProperties() - Method in class org.neuroml.model.BiophysicalProperties: Gets the value of the membraneProperties property.
getMembraneProperties2CaPools() - Method in class org.neuroml.model.BiophysicalProperties2CaPools: Gets the value of the membraneProperties2CaPools property.
getMetaid() - Method in class org.neuroml.model.Standalone: Gets the value of the metaid property.
getMetric() - Method in class org.neuroml.model.InhomogeneousParameter: Gets the value of the metric property.
getMidpoint() - Method in class org.neuroml.model.HHRate: Gets the value of the midpoint property.
getMidpoint() - Method in class org.neuroml.model.HHTime: Gets the value of the midpoint property.
getMidpoint() - Method in class org.neuroml.model.HHVariable: Gets the value of the midpoint property.
getMinimumISI() - Method in class org.neuroml.model.SpikeGeneratorRefPoisson: Gets the value of the minimumISI property.
getMinISI() - Method in class org.neuroml.model.SpikeGeneratorRandom: Gets the value of the minISI property.
getMorphology() - Method in class org.neuroml.model.Cell: Gets the value of the morphology property.
getMorphology() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the morphology property.
getMorphologyAttr() - Method in class org.neuroml.model.Cell: Gets the value of the morphologyAttr property.
getName() - Method in class org.neuroml.model.ComponentType: Gets the value of the name property.
getName() - Method in class org.neuroml.model.Constant: Gets the value of the name property.
getName() - Method in class org.neuroml.model.Exposure: Gets the value of the name property.
getName() - Method in class org.neuroml.model.InstanceRequirement: Gets the value of the name property.
getName() - Method in class org.neuroml.model.NamedDimensionalType: Gets the value of the name property.
getName() - Method in class org.neuroml.model.NamedDimensionalVariable: Gets the value of the name property.
getName() - Method in class org.neuroml.model.Regime: Gets the value of the name property.
getName() - Method in class org.neuroml.model.Segment: Gets the value of the name property.
getNamesVsSegmentGroups(Cell) - Static method in class org.neuroml.model.util.CellUtils
getNamesVsSegmentGroups(Cell, NeuroMLDocument) - Static method in class org.neuroml.model.util.CellUtils
getNetwork() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the network property.
getNeuroLexId() - Method in class org.neuroml.model.BaseCell: Gets the value of the neuroLexId property.
getNeuroLexId() - Method in class org.neuroml.model.BaseConnection: Gets the value of the neuroLexId property.
getNeuroLexId() - Method in class org.neuroml.model.BaseSynapse: Gets the value of the neuroLexId property.
getNeuroLexId() - Method in class org.neuroml.model.IonChannelKS: Gets the value of the neuroLexId property.
getNeuroLexId() - Method in class org.neuroml.model.IonChannelScalable: Gets the value of the neuroLexId property.
getNeuroLexId() - Method in class org.neuroml.model.Network: Gets the value of the neuroLexId property.
getNeuroLexId() - Method in class org.neuroml.model.Population: Gets the value of the neuroLexId property.
getNeuroLexId() - Method in class org.neuroml.model.Segment: Gets the value of the neuroLexId property.
getNeuroLexId() - Method in class org.neuroml.model.SegmentGroup: Gets the value of the neuroLexId property.
getNeuroLexId() - Method in class org.neuroml.model.SynapticConnection: Gets the value of the neuroLexId property.
getNeuroMLDocument() - Method in class org.neuroml.model.util.hdf5.NetworkHelper
getNeuroMLDocument() - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
getNormalizationEnd() - Method in class org.neuroml.model.DistalDetails: Gets the value of the normalizationEnd property.
getNotes() - Method in class org.neuroml.model.GateFractional: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.GateFractionalSubgate: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.GateHHInstantaneous: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.GateHHRates: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.GateHHRatesInf: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.GateHHRatesTau: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.GateHHRatesTauInf: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.GateHHTauInf: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.GateHHUndetermined: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.GateKS: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.SegmentGroup: Gets the value of the notes property.
getNotes() - Method in class org.neuroml.model.Standalone: Gets the value of the notes property.
getNumber() - Method in class org.neuroml.model.ChannelPopulation: Gets the value of the number property.
getNumber() - Method in class org.neuroml.model.RandomLayout: Gets the value of the number property.
getNumber() - Method in class org.neuroml.model.UnstructuredLayout: Gets the value of the number property.
getNumberConnections(String) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
getOnCondition() - Method in class org.neuroml.model.Dynamics: Gets the value of the onCondition property.
getOnCondition() - Method in class org.neuroml.model.Regime: Gets the value of the onCondition property.
getOnEntry() - Method in class org.neuroml.model.Regime: Gets the value of the onEntry property.
getOnEvent() - Method in class org.neuroml.model.Dynamics: Gets the value of the onEvent property.
getOnStart() - Method in class org.neuroml.model.Dynamics: Gets the value of the onStart property.
getOpenState() - Method in class org.neuroml.model.GateKS: Gets the value of the openState property.
getParameter() - Method in class org.neuroml.model.ComponentType: Gets the value of the parameter property.
getParameter() - Method in class org.neuroml.model.VariableParameter: Gets the value of the parameter property.
getParent() - Method in class org.neuroml.model.Segment: Gets the value of the parent property.
getPath() - Method in class org.neuroml.model.SegmentGroup: Gets the value of the path property.
getPeriod() - Method in class org.neuroml.model.SineGenerator: Gets the value of the period property.
getPeriod() - Method in class org.neuroml.model.SineGeneratorDL: Gets the value of the period property.
getPeriod() - Method in class org.neuroml.model.SpikeGenerator: Gets the value of the period property.
getPermeability() - Method in class org.neuroml.model.ChannelDensityGHK: Gets the value of the permeability property.
getPhase() - Method in class org.neuroml.model.SineGenerator: Gets the value of the phase property.
getPhase() - Method in class org.neuroml.model.SineGeneratorDL: Gets the value of the phase property.
getPhi() - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Gets the value of the phi property.
getPinskyRinzelCA3Cell() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the pinskyRinzelCA3Cell property.
getPlasticityMechanism() - Method in class org.neuroml.model.BlockingPlasticSynapse: Gets the value of the plasticityMechanism property.
getPoissonFiringSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the poissonFiringSynapse property.
getPopDatatype(H5File) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
getPopulation() - Method in class org.neuroml.model.InputList: Gets the value of the population property.
getPopulation() - Method in class org.neuroml.model.Network: Gets the value of the population property.
getPopulationComponent(String) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
getPopulationIds() - Method in class org.neuroml.model.util.hdf5.NetworkHelper
getPopulationSize(String) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
getPopulationType(String) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
getPort() - Method in class org.neuroml.model.EventOut: Gets the value of the port property.
getPort() - Method in class org.neuroml.model.OnEvent: Gets the value of the port property.
getPostCell() - Method in class org.neuroml.model.BaseConnectionNewFormat: Gets the value of the postCell property.
getPostCellId() - Method in class org.neuroml.model.BaseConnectionOldFormat: Gets the value of the postCellId property.
getPostCellId(BaseConnection) - Static method in class org.neuroml.model.util.NeuroMLConverter
getPostComponent() - Method in class org.neuroml.model.ContinuousConnection: Gets the value of the postComponent property.
getPostFractionAlong() - Method in class org.neuroml.model.BaseConnectionNewFormat: Gets the value of the postFractionAlong property.
getPostFractionAlong() - Method in class org.neuroml.model.BaseConnectionOldFormat: Gets the value of the postFractionAlong property.
getPostSegment() - Method in class org.neuroml.model.BaseConnectionNewFormat: Gets the value of the postSegment property.
getPostSegmentId() - Method in class org.neuroml.model.BaseConnectionOldFormat: Gets the value of the postSegmentId property.
getPostsynapticPopulation() - Method in class org.neuroml.model.BaseProjection: Gets the value of the postsynapticPopulation property.
getPp() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the pp property.
getPreCell() - Method in class org.neuroml.model.BaseConnectionNewFormat: Gets the value of the preCell property.
getPreCellId() - Method in class org.neuroml.model.BaseConnectionOldFormat: Gets the value of the preCellId property.
getPreCellId(BaseConnection) - Static method in class org.neuroml.model.util.NeuroMLConverter
getPreComponent() - Method in class org.neuroml.model.ContinuousConnection: Gets the value of the preComponent property.
getPreFractionAlong() - Method in class org.neuroml.model.BaseConnectionNewFormat: Gets the value of the preFractionAlong property.
getPreFractionAlong() - Method in class org.neuroml.model.BaseConnectionOldFormat: Gets the value of the preFractionAlong property.
getPreSegment() - Method in class org.neuroml.model.BaseConnectionNewFormat: Gets the value of the preSegment property.
getPreSegmentId() - Method in class org.neuroml.model.BaseConnectionOldFormat: Gets the value of the preSegmentId property.
getPresynapticPopulation() - Method in class org.neuroml.model.BaseProjection: Gets the value of the presynapticPopulation property.
getProjDatatype(H5File) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
getProjection() - Method in class org.neuroml.model.Network: Gets the value of the projection property.
getProjectionIds() - Method in class org.neuroml.model.util.hdf5.NetworkHelper
getProperty() - Method in class org.neuroml.model.ComponentType: Gets the value of the property property.
getProperty() - Method in class org.neuroml.model.SegmentGroup: Gets the value of the property property.
getProperty() - Method in class org.neuroml.model.Standalone: Gets the value of the property property.
getProximal() - Method in class org.neuroml.model.InhomogeneousParameter: Gets the value of the proximal property.
getProximal() - Method in class org.neuroml.model.Segment: Gets the value of the proximal property.
getPulseGenerator() - Method in class org.neuroml.model.CompoundInput: Gets the value of the pulseGenerator property.
getPulseGenerator() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the pulseGenerator property.
getPulseGeneratorDL() - Method in class org.neuroml.model.CompoundInputDL: Gets the value of the pulseGeneratorDL property.
getPulseGeneratorDL() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the pulseGeneratorDL property.
getQ10ConductanceScaling() - Method in class org.neuroml.model.IonChannelScalable: Gets the value of the q10ConductanceScaling property.
getQ10Factor() - Method in class org.neuroml.model.Q10ConductanceScaling: Gets the value of the q10Factor property.
getQ10Factor() - Method in class org.neuroml.model.Q10Settings: Gets the value of the q10Factor property.
getQ10Settings() - Method in class org.neuroml.model.GateFractional: Gets the value of the q10Settings property.
getQ10Settings() - Method in class org.neuroml.model.GateFractionalSubgate: Gets the value of the q10Settings property.
getQ10Settings() - Method in class org.neuroml.model.GateHHRates: Gets the value of the q10Settings property.
getQ10Settings() - Method in class org.neuroml.model.GateHHRatesInf: Gets the value of the q10Settings property.
getQ10Settings() - Method in class org.neuroml.model.GateHHRatesTau: Gets the value of the q10Settings property.
getQ10Settings() - Method in class org.neuroml.model.GateHHRatesTauInf: Gets the value of the q10Settings property.
getQ10Settings() - Method in class org.neuroml.model.GateHHTauInf: Gets the value of the q10Settings property.
getQ10Settings() - Method in class org.neuroml.model.GateHHUndetermined: Gets the value of the q10Settings property.
getQ10Settings() - Method in class org.neuroml.model.GateKS: Gets the value of the q10Settings property.
getQd0() - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Gets the value of the qd0 property.
getR() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the r property.
getRampGenerator() - Method in class org.neuroml.model.CompoundInput: Gets the value of the rampGenerator property.
getRampGenerator() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the rampGenerator property.
getRampGeneratorDL() - Method in class org.neuroml.model.CompoundInputDL: Gets the value of the rampGeneratorDL property.
getRampGeneratorDL() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the rampGeneratorDL property.
getRandom() - Method in class org.neuroml.model.Layout: Gets the value of the random property.
getRate() - Method in class org.neuroml.model.HHRate: Gets the value of the rate property.
getRate() - Method in class org.neuroml.model.HHTime: Gets the value of the rate property.
getRate() - Method in class org.neuroml.model.HHVariable: Gets the value of the rate property.
getRate() - Method in class org.neuroml.model.SpikeSourcePoisson: Gets the value of the rate property.
getRefract() - Method in class org.neuroml.model.AdExIaFCell: Gets the value of the refract property.
getRefract() - Method in class org.neuroml.model.IafRefCell: Gets the value of the refract property.
getRefract() - Method in class org.neuroml.model.IafTauRefCell: Gets the value of the refract property.
getRegime() - Method in class org.neuroml.model.Dynamics: Gets the value of the regime property.
getRegime() - Method in class org.neuroml.model.Transition: Gets the value of the regime property.
getRegion() - Method in class org.neuroml.model.Network: Gets the value of the region property.
getRegion() - Method in class org.neuroml.model.RandomLayout: Gets the value of the region property.
getRequirement() - Method in class org.neuroml.model.ComponentType: Gets the value of the requirement property.
getReset() - Method in class org.neuroml.model.AdExIaFCell: Gets the value of the reset property.
getReset() - Method in class org.neuroml.model.IafCell: Gets the value of the reset property.
getReset() - Method in class org.neuroml.model.IafTauCell: Gets the value of the reset property.
getResistivity() - Method in class org.neuroml.model.IntracellularProperties: Gets the value of the resistivity property.
getRestingConc() - Method in class org.neuroml.model.DecayingPoolConcentrationModel: Gets the value of the restingConc property.
getRestingConc() - Method in class org.neuroml.model.FixedFactorConcentrationModel: Gets the value of the restingConc property.
getReturnVoltage() - Method in class org.neuroml.model.VoltageClampTriple: Gets the value of the returnVoltage property.
getReverseRate() - Method in class org.neuroml.model.GateHHRates: Gets the value of the reverseRate property.
getReverseRate() - Method in class org.neuroml.model.GateHHRatesInf: Gets the value of the reverseRate property.
getReverseRate() - Method in class org.neuroml.model.GateHHRatesTau: Gets the value of the reverseRate property.
getReverseRate() - Method in class org.neuroml.model.GateHHRatesTauInf: Gets the value of the reverseRate property.
getReverseRate() - Method in class org.neuroml.model.GateHHUndetermined: Gets the value of the reverseRate property.
getRho() - Method in class org.neuroml.model.FixedFactorConcentrationModel: Gets the value of the rho property.
getRootGroup(H5File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
getS() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the s property.
getScale() - Method in class org.neuroml.model.HHRate: Gets the value of the scale property.
getScale() - Method in class org.neuroml.model.HHTime: Gets the value of the scale property.
getScale() - Method in class org.neuroml.model.HHVariable: Gets the value of the scale property.
getScalingConc() - Method in class org.neuroml.model.BlockMechanism: Gets the value of the scalingConc property.
getScalingVolt() - Method in class org.neuroml.model.BlockMechanism: Gets the value of the scalingVolt property.
getSegment() - Method in class org.neuroml.model.ChannelDensity: Gets the value of the segment property.
getSegment() - Method in class org.neuroml.model.ChannelDensityGHK: Gets the value of the segment property.
getSegment() - Method in class org.neuroml.model.ChannelDensityGHK2: Gets the value of the segment property.
getSegment() - Method in class org.neuroml.model.ChannelDensityNernst: Gets the value of the segment property.
getSegment() - Method in class org.neuroml.model.ChannelPopulation: Gets the value of the segment property.
getSegment() - Method in class org.neuroml.model.Member: Gets the value of the segment property.
getSegment() - Method in class org.neuroml.model.Morphology: Gets the value of the segment property.
getSegment() - Method in class org.neuroml.model.SegmentEndPoint: Gets the value of the segment property.
getSegment() - Method in class org.neuroml.model.SegmentParent: Gets the value of the segment property.
getSegmentGroup() - Method in class org.neuroml.model.ChannelDensity: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.ChannelDensityGHK: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.ChannelDensityGHK2: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.ChannelDensityNernst: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.ChannelPopulation: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.Include: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.InitMembPotential: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.Morphology: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.Resistivity: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.Species: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.SpecificCapacitance: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.SpikeThresh: Gets the value of the segmentGroup property.
getSegmentGroup() - Method in class org.neuroml.model.VariableParameter: Gets the value of the segmentGroup property.
getSegmentGroup(Cell, String) - Static method in class org.neuroml.model.util.CellUtils
getSegmentGroupsVsSegIds(Cell) - Static method in class org.neuroml.model.util.CellUtils
getSegmentGroupsVsSegIds(Cell, NeuroMLDocument) - Static method in class org.neuroml.model.util.CellUtils
getSegmentId() - Method in class org.neuroml.model.Input: Gets the value of the segmentId property.
getSegmentId(Input) - Static method in class org.neuroml.model.util.NeuroMLConverter
getSegmentIdsInGroup(LinkedHashMap<String, SegmentGroup>, SegmentGroup) - Static method in class org.neuroml.model.util.CellUtils
getSegmentIdsInGroup(Cell, String) - Static method in class org.neuroml.model.util.CellUtils
getSegmentsInGroup(Cell, String) - Static method in class org.neuroml.model.util.CellUtils: Deprecated.
getSegmentsInGroup(Cell, LinkedHashMap<String, SegmentGroup>, SegmentGroup) - Static method in class org.neuroml.model.util.CellUtils
getSegmentsInGroup(Cell, NeuroMLDocument, String) - Static method in class org.neuroml.model.util.CellUtils
getSegmentsInGroup(Cell, NeuroMLDocument, LinkedHashMap<String, SegmentGroup>, SegmentGroup) - Static method in class org.neuroml.model.util.CellUtils
getSegmentWithId(Cell, int) - Static method in class org.neuroml.model.util.CellUtils: Deprecated.
getSegmentWithId(Cell, NeuroMLDocument, int) - Static method in class org.neuroml.model.util.CellUtils
getSelect() - Method in class org.neuroml.model.CellSet: Gets the value of the select property.
getSelect() - Method in class org.neuroml.model.DerivedVariable: Gets the value of the select property.
getShellThickness() - Method in class org.neuroml.model.DecayingPoolConcentrationModel: Gets the value of the shellThickness property.
getSilentSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the silentSynapse property.
getSimpleAttr(String, String, H5File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
getSimpleSeriesResistance() - Method in class org.neuroml.model.VoltageClamp: Gets the value of the simpleSeriesResistance property.
getSimpleSeriesResistance() - Method in class org.neuroml.model.VoltageClampTriple: Gets the value of the simpleSeriesResistance property.
getSineGenerator() - Method in class org.neuroml.model.CompoundInput: Gets the value of the sineGenerator property.
getSineGenerator() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the sineGenerator property.
getSineGeneratorDL() - Method in class org.neuroml.model.CompoundInputDL: Gets the value of the sineGeneratorDL property.
getSineGeneratorDL() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the sineGeneratorDL property.
getSize() - Method in class org.neuroml.model.Population: Gets the value of the size property.
getSource() - Method in class org.neuroml.model.ReactionScheme: Gets the value of the source property.
getSpace() - Method in class org.neuroml.model.Layout: Gets the value of the space property.
getSpace() - Method in class org.neuroml.model.Network: Gets the value of the space property.
getSpace() - Method in class org.neuroml.model.Region: Gets the value of the space property.
getSpecies() - Method in class org.neuroml.model.BlockMechanism: Gets the value of the species property.
getSpecies() - Method in class org.neuroml.model.ExtracellularProperties: Gets the value of the species property.
getSpecies() - Method in class org.neuroml.model.ExtracellularPropertiesLocal: Gets the value of the species property.
getSpecies() - Method in class org.neuroml.model.IntracellularProperties: Gets the value of the species property.
getSpecies() - Method in class org.neuroml.model.IonChannel: Gets the value of the species property.
getSpecies() - Method in class org.neuroml.model.IonChannelKS: Gets the value of the species property.
getSpecificCapacitance() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the specificCapacitance property.
getSpike() - Method in class org.neuroml.model.SpikeArray: Gets the value of the spike property.
getSpike() - Method in class org.neuroml.model.TimedSynapticInput: Gets the value of the spike property.
getSpikeArray() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the spikeArray property.
getSpikeGenerator() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the spikeGenerator property.
getSpikeGeneratorPoisson() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the spikeGeneratorPoisson property.
getSpikeGeneratorRandom() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the spikeGeneratorRandom property.
getSpikeGeneratorRefPoisson() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the spikeGeneratorRefPoisson property.
getSpikeSourcePoisson() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the spikeSourcePoisson property.
getSpikeTarget() - Method in class org.neuroml.model.PoissonFiringSynapse: Gets the value of the spikeTarget property.
getSpikeTarget() - Method in class org.neuroml.model.TimedSynapticInput: Gets the value of the spikeTarget property.
getSpikeTarget() - Method in class org.neuroml.model.TransientPoissonFiringSynapse: Gets the value of the spikeTarget property.
getSpikeThresh() - Method in class org.neuroml.model.MembraneProperties: Gets the value of the spikeThresh property.
getStart() - Method in class org.neuroml.model.SpikeSourcePoisson: Gets the value of the start property.
getStartAmplitude() - Method in class org.neuroml.model.RampGenerator: Gets the value of the startAmplitude property.
getStartAmplitude() - Method in class org.neuroml.model.RampGeneratorDL: Gets the value of the startAmplitude property.
getStateAssignment() - Method in class org.neuroml.model.OnCondition: Gets the value of the stateAssignment property.
getStateAssignment() - Method in class org.neuroml.model.OnEntry: Gets the value of the stateAssignment property.
getStateAssignment() - Method in class org.neuroml.model.OnEvent: Gets the value of the stateAssignment property.
getStateAssignment() - Method in class org.neuroml.model.OnStart: Gets the value of the stateAssignment property.
getStateVariable() - Method in class org.neuroml.model.Dynamics: Gets the value of the stateVariable property.
getSteadyState() - Method in class org.neuroml.model.GateFractionalSubgate: Gets the value of the steadyState property.
getSteadyState() - Method in class org.neuroml.model.GateHHInstantaneous: Gets the value of the steadyState property.
getSteadyState() - Method in class org.neuroml.model.GateHHRatesInf: Gets the value of the steadyState property.
getSteadyState() - Method in class org.neuroml.model.GateHHRatesTauInf: Gets the value of the steadyState property.
getSteadyState() - Method in class org.neuroml.model.GateHHTauInf: Gets the value of the steadyState property.
getSteadyState() - Method in class org.neuroml.model.GateHHUndetermined: Gets the value of the steadyState property.
getSteadyState() - Method in class org.neuroml.model.TauInfTransition: Gets the value of the steadyState property.
getStructure() - Method in class org.neuroml.model.Space: Gets the value of the structure property.
getSubGate() - Method in class org.neuroml.model.GateFractional: Gets the value of the subGate property.
getSubGate() - Method in class org.neuroml.model.GateHHUndetermined: Gets the value of the subGate property.
getSubTree() - Method in class org.neuroml.model.SegmentGroup: Gets the value of the subTree property.
getSynapse() - Method in class org.neuroml.model.ElectricalConnection: Gets the value of the synapse property.
getSynapse() - Method in class org.neuroml.model.PoissonFiringSynapse: Gets the value of the synapse property.
getSynapse() - Method in class org.neuroml.model.Projection: Gets the value of the synapse property.
getSynapse() - Method in class org.neuroml.model.SynapticConnection: Gets the value of the synapse property.
getSynapse() - Method in class org.neuroml.model.TimedSynapticInput: Gets the value of the synapse property.
getSynapse() - Method in class org.neuroml.model.TransientPoissonFiringSynapse: Gets the value of the synapse property.
getSynapse1() - Method in class org.neuroml.model.DoubleSynapse: Gets the value of the synapse1 property.
getSynapse1Path() - Method in class org.neuroml.model.DoubleSynapse: Gets the value of the synapse1Path property.
getSynapse2() - Method in class org.neuroml.model.DoubleSynapse: Gets the value of the synapse2 property.
getSynapse2Path() - Method in class org.neuroml.model.DoubleSynapse: Gets the value of the synapse2Path property.
getSynapticConnection() - Method in class org.neuroml.model.Network: Gets the value of the synapticConnection property.
getTag() - Method in class org.neuroml.model.Property: Gets the value of the tag property.
getTarget() - Method in class org.neuroml.model.ExplicitInput: Gets the value of the target property.
getTarget() - Method in class org.neuroml.model.Input: Gets the value of the target property.
getTargetCellId(Input) - Static method in class org.neuroml.model.util.NeuroMLConverter
getTargetVoltage() - Method in class org.neuroml.model.VoltageClamp: Gets the value of the targetVoltage property.
getTau() - Method in class org.neuroml.model.AlphaCurrentSynapse: Gets the value of the tau property.
getTau() - Method in class org.neuroml.model.AlphaSynapse: Gets the value of the tau property.
getTau() - Method in class org.neuroml.model.HHTime: Gets the value of the tau property.
getTau() - Method in class org.neuroml.model.IafTauCell: Gets the value of the tau property.
getTauDecay() - Method in class org.neuroml.model.ExpOneSynapse: Gets the value of the tauDecay property.
getTauDecay() - Method in class org.neuroml.model.ExpTwoSynapse: Gets the value of the tauDecay property.
getTauDecay1() - Method in class org.neuroml.model.ExpThreeSynapse: Gets the value of the tauDecay1 property.
getTauDecay2() - Method in class org.neuroml.model.ExpThreeSynapse: Gets the value of the tauDecay2 property.
getTauFac() - Method in class org.neuroml.model.PlasticityMechanism: Gets the value of the tauFac property.
getTauM() - Method in class org.neuroml.model.BasePyNNIaFCell: Gets the value of the tauM property.
getTauRec() - Method in class org.neuroml.model.PlasticityMechanism: Gets the value of the tauRec property.
getTauRefrac() - Method in class org.neuroml.model.BasePyNNIaFCell: Gets the value of the tauRefrac property.
getTauRise() - Method in class org.neuroml.model.ExpThreeSynapse: Gets the value of the tauRise property.
getTauRise() - Method in class org.neuroml.model.ExpTwoSynapse: Gets the value of the tauRise property.
getTauSyn() - Method in class org.neuroml.model.BasePynnSynapse: Gets the value of the tauSyn property.
getTauSynE() - Method in class org.neuroml.model.BasePyNNCell: Gets the value of the tauSynE property.
getTauSynI() - Method in class org.neuroml.model.BasePyNNCell: Gets the value of the tauSynI property.
getTauw() - Method in class org.neuroml.model.AdExIaFCell: Gets the value of the tauw property.
getTauW() - Method in class org.neuroml.model.EIFCondExpIsfaIsta: Gets the value of the tauW property.
getTemperature() - Method in class org.neuroml.model.Network: Gets the value of the temperature property.
getTest() - Method in class org.neuroml.model.OnCondition: Gets the value of the test property.
getTestingVoltage() - Method in class org.neuroml.model.VoltageClampTriple: Gets the value of the testingVoltage property.
getThresh() - Method in class org.neuroml.model.AdExIaFCell: Gets the value of the thresh property.
getThresh() - Method in class org.neuroml.model.IafCell: Gets the value of the thresh property.
getThresh() - Method in class org.neuroml.model.IafTauCell: Gets the value of the thresh property.
getThresh() - Method in class org.neuroml.model.IzhikevichCell: Gets the value of the thresh property.
getTime() - Method in class org.neuroml.model.Spike: Gets the value of the time property.
getTimeCourse() - Method in class org.neuroml.model.GateFractionalSubgate: Gets the value of the timeCourse property.
getTimeCourse() - Method in class org.neuroml.model.GateHHRatesTau: Gets the value of the timeCourse property.
getTimeCourse() - Method in class org.neuroml.model.GateHHRatesTauInf: Gets the value of the timeCourse property.
getTimeCourse() - Method in class org.neuroml.model.GateHHTauInf: Gets the value of the timeCourse property.
getTimeCourse() - Method in class org.neuroml.model.GateHHUndetermined: Gets the value of the timeCourse property.
getTimeCourse() - Method in class org.neuroml.model.TauInfTransition: Gets the value of the timeCourse property.
getTimeDerivative() - Method in class org.neuroml.model.Dynamics: Gets the value of the timeDerivative property.
getTimeDerivative() - Method in class org.neuroml.model.Regime: Gets the value of the timeDerivative property.
getTimedSynapticInput() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the timedSynapticInput property.
getTo() - Method in class org.neuroml.model.ForwardTransition: Gets the value of the to property.
getTo() - Method in class org.neuroml.model.Path: Gets the value of the to property.
getTo() - Method in class org.neuroml.model.ReverseTransition: Gets the value of the to property.
getTo() - Method in class org.neuroml.model.SubTree: Gets the value of the to property.
getTo() - Method in class org.neuroml.model.SynapticConnection: Gets the value of the to property.
getTo() - Method in class org.neuroml.model.TauInfTransition: Gets the value of the to property.
getTransientPoissonFiringSynapse() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the transientPoissonFiringSynapse property.
getTransition() - Method in class org.neuroml.model.OnCondition: Gets the value of the transition property.
getTranslationStart() - Method in class org.neuroml.model.ProximalDetails: Gets the value of the translationStart property.
getType() - Method in class org.neuroml.model.BlockMechanism: Gets the value of the type property.
getType() - Method in class org.neuroml.model.ConcentrationModelD: Gets the value of the type property.
getType() - Method in class org.neuroml.model.GateHHUndetermined: Gets the value of the type property.
getType() - Method in class org.neuroml.model.HHRate: Gets the value of the type property.
getType() - Method in class org.neuroml.model.HHTime: Gets the value of the type property.
getType() - Method in class org.neuroml.model.HHVariable: Gets the value of the type property.
getType() - Method in class org.neuroml.model.InstanceRequirement: Gets the value of the type property.
getType() - Method in class org.neuroml.model.IonChannel: Gets the value of the type property.
getType() - Method in class org.neuroml.model.Network: Gets the value of the type property.
getType() - Method in class org.neuroml.model.PlasticityMechanism: Gets the value of the type property.
getType() - Method in class org.neuroml.model.Population: Gets the value of the type property.
getType() - Method in class org.neuroml.model.Q10Settings: Gets the value of the type property.
getType() - Method in class org.neuroml.model.ReactionScheme: Gets the value of the type property.
getUnstructured() - Method in class org.neuroml.model.Layout: Gets the value of the unstructured property.
getV0() - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Gets the value of the v0 property.
getV0() - Method in class org.neuroml.model.Izhikevich2007Cell: Gets the value of the v0 property.
getV0() - Method in class org.neuroml.model.IzhikevichCell: Gets the value of the v0 property.
getValidity() - Method in class org.neuroml.model.util.NeuroML2Validator
getValue() - Method in class org.neuroml.model.Case: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.Constant: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.DerivedParameter: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.DerivedVariable: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.InhomogeneousValue: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.InitMembPotential: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.Property: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.Resistivity: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.SpecificCapacitance: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.SpikeThresh: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.StateAssignment: Gets the value of the value property.
getValue() - Method in class org.neuroml.model.TimeDerivative: Gets the value of the value property.
getVariable() - Method in class org.neuroml.model.InhomogeneousParameter: Gets the value of the variable property.
getVariable() - Method in class org.neuroml.model.StateAssignment: Gets the value of the variable property.
getVariable() - Method in class org.neuroml.model.TimeDerivative: Gets the value of the variable property.
getVariableParameter() - Method in class org.neuroml.model.ChannelDensity: Gets the value of the variableParameter property.
getVariableParameter() - Method in class org.neuroml.model.ChannelDensityNernst: Gets the value of the variableParameter property.
getVariableParameter() - Method in class org.neuroml.model.ChannelDensityNonUniform: Gets the value of the variableParameter property.
getVariableParameter() - Method in class org.neuroml.model.ChannelDensityNonUniformGHK: Gets the value of the variableParameter property.
getVariableParameter() - Method in class org.neuroml.model.ChannelDensityNonUniformNernst: Gets the value of the variableParameter property.
getVariableParameter() - Method in class org.neuroml.model.ChannelPopulation: Gets the value of the variableParameter property.
getVInit() - Method in class org.neuroml.model.BasePyNNCell: Gets the value of the vInit property.
getVOffset() - Method in class org.neuroml.model.HHCondExp: Gets the value of the vOffset property.
getVoltageClamp() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the voltageClamp property.
getVoltageClampTriple() - Method in class org.neuroml.model.NeuroMLDocument: Gets the value of the voltageClampTriple property.
getVpeak() - Method in class org.neuroml.model.Izhikevich2007Cell: Gets the value of the vpeak property.
getVr() - Method in class org.neuroml.model.Izhikevich2007Cell: Gets the value of the vr property.
getVReset() - Method in class org.neuroml.model.BasePyNNIaFCell: Gets the value of the vReset property.
getVRest() - Method in class org.neuroml.model.BasePyNNIaFCell: Gets the value of the vRest property.
getVScaling() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the vScaling property.
getVShift() - Method in class org.neuroml.model.ChannelDensityVShift: Gets the value of the vShift property.
getVShift() - Method in class org.neuroml.model.IonChannelVShift: Gets the value of the vShift property.
getVSpike() - Method in class org.neuroml.model.EIFCondExpIsfaIsta: Gets the value of the vSpike property.
getVt() - Method in class org.neuroml.model.Izhikevich2007Cell: Gets the value of the vt property.
getVT() - Method in class org.neuroml.model.AdExIaFCell: Gets the value of the vt property.
getVth() - Method in class org.neuroml.model.GradedSynapse: Gets the value of the vth property.
getVThresh() - Method in class org.neuroml.model.BasePyNNIaFCell: Gets the value of the vThresh property.
getW0() - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Gets the value of the w0 property.
getWarnings() - Method in class org.neuroml.model.util.NeuroML2Validator
getWeight() - Method in class org.neuroml.model.ConnectionWD: Gets the value of the weight property.
getWeight() - Method in class org.neuroml.model.ContinuousConnectionInstanceW: Gets the value of the weight property.
getWeight() - Method in class org.neuroml.model.ElectricalConnectionInstanceW: Gets the value of the weight property.
getWeight() - Method in class org.neuroml.model.InputW: Gets the value of the weight property.
getX() - Method in class org.neuroml.model.Location: Gets the value of the x property.
getX() - Method in class org.neuroml.model.Point3DWithDiam: Gets the value of the x property.
getX0() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the x0 property.
getX1() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the x1 property.
getXSize() - Method in class org.neuroml.model.GridLayout: Gets the value of the xSize property.
getXSpacing() - Method in class org.neuroml.model.SpaceStructure: Gets the value of the xSpacing property.
getXStart() - Method in class org.neuroml.model.SpaceStructure: Gets the value of the xStart property.
getY() - Method in class org.neuroml.model.Location: Gets the value of the y property.
getY() - Method in class org.neuroml.model.Point3DWithDiam: Gets the value of the y property.
getY0() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the y0 property.
getYSize() - Method in class org.neuroml.model.GridLayout: Gets the value of the ySize property.
getYSpacing() - Method in class org.neuroml.model.SpaceStructure: Gets the value of the ySpacing property.
getYStart() - Method in class org.neuroml.model.SpaceStructure: Gets the value of the yStart property.
getZ() - Method in class org.neuroml.model.Location: Gets the value of the z property.
getZ() - Method in class org.neuroml.model.Point3DWithDiam: Gets the value of the z property.
getZ0() - Method in class org.neuroml.model.HindmarshRose1984Cell: Gets the value of the z0 property.
getZSize() - Method in class org.neuroml.model.GridLayout: Gets the value of the zSize property.
getZSpacing() - Method in class org.neuroml.model.SpaceStructure: Gets the value of the zSpacing property.
getZStart() - Method in class org.neuroml.model.SpaceStructure: Gets the value of the zStart property.
gKahp - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
gkc - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
gKdr - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
gl - Variable in class org.neuroml.model.AdExIaFCell
gLd - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
gLeak - Variable in class org.neuroml.model.HHCondExp
gLs - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
gNa - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
gNmda - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
gradedSynapse - Variable in class org.neuroml.model.NeuroMLDocument
GradedSynapse - Class in org.neuroml.model: Graded/analog synapse.
GradedSynapse() - Constructor for class org.neuroml.model.GradedSynapse
grid - Variable in class org.neuroml.model.Layout
GRID_1_D - Enum constant in enum org.neuroml.model.AllowedSpaces
GRID_2_D - Enum constant in enum org.neuroml.model.AllowedSpaces
GRID_3_D - Enum constant in enum org.neuroml.model.AllowedSpaces
GridLayout - Class in org.neuroml.model: Java class for GridLayout complex type.
GridLayout() - Constructor for class org.neuroml.model.GridLayout

H

hasSegmentGroup(Cell, String) - Static method in class org.neuroml.model.util.CellUtils
hasUnbranchedNonOverlappingInfo(Cell) - Static method in class org.neuroml.model.util.CellUtils: Deprecated.
hasUnbranchedNonOverlappingInfo(Cell, NeuroMLDocument) - Static method in class org.neuroml.model.util.CellUtils
hasWarnings() - Method in class org.neuroml.model.util.NeuroML2Validator
Hdf5Exception - Exception in org.neuroml.model.util.hdf5
Hdf5Exception(String) - Constructor for exception org.neuroml.model.util.hdf5.Hdf5Exception
Hdf5Exception(String, Throwable) - Constructor for exception org.neuroml.model.util.hdf5.Hdf5Exception
Hdf5Utils - Class in org.neuroml.model.util.hdf5
Hdf5Utils() - Constructor for class org.neuroml.model.util.hdf5.Hdf5Utils
hhCondExp - Variable in class org.neuroml.model.NeuroMLDocument
HHCondExp - Class in org.neuroml.model: Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
HHCondExp() - Constructor for class org.neuroml.model.HHCondExp
HHRate - Class in org.neuroml.model: Java class for HHRate complex type.
HHRate() - Constructor for class org.neuroml.model.HHRate
HHTime - Class in org.neuroml.model: Java class for HHTime complex type.
HHTime() - Constructor for class org.neuroml.model.HHTime
HHVariable - Class in org.neuroml.model: Java class for HHVariable complex type.
HHVariable() - Constructor for class org.neuroml.model.HHVariable
hindmarshRose1984Cell - Variable in class org.neuroml.model.NeuroMLDocument
HindmarshRose1984Cell - Class in org.neuroml.model: The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
HindmarshRose1984Cell() - Constructor for class org.neuroml.model.HindmarshRose1984Cell
href - Variable in class org.neuroml.model.IncludeType

I

i - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
i - Variable in class org.neuroml.model.FitzHughNagumoCell
i - Variable in class org.neuroml.model.Instance
iafCell - Variable in class org.neuroml.model.NeuroMLDocument
IafCell - Class in org.neuroml.model: Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** \n :param leakConductance: :type leakConductance: conductance :param leakReversal: :type leakReversal: voltage :param thresh: :type thresh: voltage :param reset: :type reset: voltage :param C: Total capacitance of the cell membrane :type C: capacitance
IafCell() - Constructor for class org.neuroml.model.IafCell
iafRefCell - Variable in class org.neuroml.model.NeuroMLDocument
IafRefCell - Class in org.neuroml.model: Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** \n :param refract: :type refract: time :param leakConductance: :type leakConductance: conductance :param leakReversal: :type leakReversal: voltage :param thresh: :type thresh: voltage :param reset: :type reset: voltage :param C: Total capacitance of the cell membrane :type C: capacitance
IafRefCell() - Constructor for class org.neuroml.model.IafRefCell
iafTauCell - Variable in class org.neuroml.model.NeuroMLDocument
IafTauCell - Class in org.neuroml.model: Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** \n :param leakReversal: :type leakReversal: voltage :param tau: :type tau: time :param thresh: The membrane potential at which to emit a spiking event and reset voltage :type thresh: voltage :param reset: The value the membrane potential is reset to on spiking :type reset: voltage
IafTauCell() - Constructor for class org.neuroml.model.IafTauCell
iafTauRefCell - Variable in class org.neuroml.model.NeuroMLDocument
IafTauRefCell - Class in org.neuroml.model: Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking \n :param refract: :type refract: time :param leakReversal: :type leakReversal: voltage :param tau: :type tau: time :param thresh: The membrane potential at which to emit a spiking event and reset voltage :type thresh: voltage :param reset: The value the membrane potential is reset to on spiking :type reset: voltage
IafTauRefCell() - Constructor for class org.neuroml.model.IafTauRefCell
ibase - Variable in class org.neuroml.model.AlphaCurrentSynapse
id - Variable in class org.neuroml.model.Base
id - Variable in class org.neuroml.model.BaseNonNegativeIntegerId
id - Variable in class org.neuroml.model.Instance
id - Variable in class org.neuroml.model.util.StandardTest
iDend - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
ifCondAlpha - Variable in class org.neuroml.model.NeuroMLDocument
IFCondAlpha - Class in org.neuroml.model: Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance \n :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_E: none :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_I: none :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
IFCondAlpha() - Constructor for class org.neuroml.model.IFCondAlpha
ifCondExp - Variable in class org.neuroml.model.NeuroMLDocument
IFCondExp - Class in org.neuroml.model: Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance \n :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_E: none :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_I: none :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
IFCondExp() - Constructor for class org.neuroml.model.IFCondExp
ifCurrAlpha - Variable in class org.neuroml.model.NeuroMLDocument
IFCurrAlpha - Class in org.neuroml.model: Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current \n :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
IFCurrAlpha() - Constructor for class org.neuroml.model.IFCurrAlpha
ifCurrExp - Variable in class org.neuroml.model.NeuroMLDocument
IFCurrExp - Class in org.neuroml.model: Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current \n :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
IFCurrExp() - Constructor for class org.neuroml.model.IFCurrExp
include - Variable in class org.neuroml.model.NeuroMLDocument
include - Variable in class org.neuroml.model.SegmentGroup
Include - Class in org.neuroml.model: Include all members of another **segmentGroup** in this group
Include() - Constructor for class org.neuroml.model.Include
IncludeType - Class in org.neuroml.model: Java class for IncludeType complex type.
IncludeType() - Constructor for class org.neuroml.model.IncludeType
inhomogeneousParameter - Variable in class org.neuroml.model.InhomogeneousValue
inhomogeneousParameter - Variable in class org.neuroml.model.SegmentGroup
InhomogeneousParameter - Class in org.neuroml.model: An inhomogeneous parameter specified across the **segmentGroup** ( see **variableParameter** for usage ).
InhomogeneousParameter() - Constructor for class org.neuroml.model.InhomogeneousParameter
inhomogeneousValue - Variable in class org.neuroml.model.VariableParameter
InhomogeneousValue - Class in org.neuroml.model: Specifies the **value** of an **inhomogeneousParameter.** For usage see **variableParameter**
InhomogeneousValue() - Constructor for class org.neuroml.model.InhomogeneousValue
initial - Variable in class org.neuroml.model.Regime
initialConcentration - Variable in class org.neuroml.model.Species
initialExtConcentration - Variable in class org.neuroml.model.Species
initMembPotential - Variable in class org.neuroml.model.MembraneProperties
InitMembPotential - Class in org.neuroml.model: Explicitly set initial membrane potential for the cell \n :param value: :type value: voltage
InitMembPotential() - Constructor for class org.neuroml.model.InitMembPotential
initReleaseProb - Variable in class org.neuroml.model.PlasticityMechanism
input - Variable in class org.neuroml.model.ExplicitInput
input - Variable in class org.neuroml.model.InputList
Input - Class in org.neuroml.model: Specifies a single input to a **target,** optionally giving the **segmentId** ( default 0 ) and **fractionAlong** the segment ( default 0.
Input() - Constructor for class org.neuroml.model.Input
INPUT_LIST - Static variable in class org.neuroml.model.util.NeuroMLElements
inputList - Variable in class org.neuroml.model.Network
InputList - Class in org.neuroml.model: An explicit list of **input** s to a **population.**
InputList() - Constructor for class org.neuroml.model.InputList
inputW - Variable in class org.neuroml.model.InputList
InputW - Class in org.neuroml.model: Specifies input lists.
InputW() - Constructor for class org.neuroml.model.InputW
instance - Variable in class org.neuroml.model.Population
Instance - Class in org.neuroml.model: Specifies a single instance of a component in a **population** ( placed at **location** ).
Instance() - Constructor for class org.neuroml.model.Instance
INSTANCE - Static variable in class org.neuroml.model.util.NeuroMLElements
instanceRequirement - Variable in class org.neuroml.model.ComponentType
InstanceRequirement - Class in org.neuroml.model: Java class for InstanceRequirement complex type.
InstanceRequirement() - Constructor for class org.neuroml.model.InstanceRequirement
instances - Variable in class org.neuroml.model.GateFractional
instances - Variable in class org.neuroml.model.GateHHInstantaneous
instances - Variable in class org.neuroml.model.GateHHRates
instances - Variable in class org.neuroml.model.GateHHRatesInf
instances - Variable in class org.neuroml.model.GateHHRatesTau
instances - Variable in class org.neuroml.model.GateHHRatesTauInf
instances - Variable in class org.neuroml.model.GateHHTauInf
instances - Variable in class org.neuroml.model.GateHHUndetermined
instances - Variable in class org.neuroml.model.GateKS
intracellularProperties - Variable in class org.neuroml.model.BiophysicalProperties
intracellularProperties - Variable in class org.neuroml.model.NeuroMLDocument
IntracellularProperties - Class in org.neuroml.model: Biophysical properties related to the intracellular space within the **cell** , such as the **resistivity** and the list of ionic **species** present.
IntracellularProperties() - Constructor for class org.neuroml.model.IntracellularProperties
intracellularProperties2CaPools - Variable in class org.neuroml.model.BiophysicalProperties2CaPools
IntracellularProperties2CaPools - Class in org.neuroml.model: Variant of intracellularProperties with 2 independent Ca pools
IntracellularProperties2CaPools() - Constructor for class org.neuroml.model.IntracellularProperties2CaPools
iOffset - Variable in class org.neuroml.model.BasePyNNCell
ion - Variable in class org.neuroml.model.ChannelDensity
ion - Variable in class org.neuroml.model.ChannelDensityGHK
ion - Variable in class org.neuroml.model.ChannelDensityGHK2
ion - Variable in class org.neuroml.model.ChannelDensityNernst
ion - Variable in class org.neuroml.model.ChannelDensityNonUniform
ion - Variable in class org.neuroml.model.ChannelDensityNonUniformGHK
ion - Variable in class org.neuroml.model.ChannelDensityNonUniformNernst
ion - Variable in class org.neuroml.model.ChannelPopulation
ion - Variable in class org.neuroml.model.DecayingPoolConcentrationModel
ion - Variable in class org.neuroml.model.FixedFactorConcentrationModel
ion - Variable in class org.neuroml.model.Species
ION_CHANNEL_HH - Enum constant in enum org.neuroml.model.ChannelTypes
ION_CHANNEL_HH_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
ION_CHANNEL_KS_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
ION_CHANNEL_PASSIVE - Enum constant in enum org.neuroml.model.ChannelTypes
ION_CHANNEL_V_SHIFT_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
ionChannel - Variable in class org.neuroml.model.ChannelDensity
ionChannel - Variable in class org.neuroml.model.ChannelDensityGHK
ionChannel - Variable in class org.neuroml.model.ChannelDensityGHK2
ionChannel - Variable in class org.neuroml.model.ChannelDensityNernst
ionChannel - Variable in class org.neuroml.model.ChannelDensityNonUniform
ionChannel - Variable in class org.neuroml.model.ChannelDensityNonUniformGHK
ionChannel - Variable in class org.neuroml.model.ChannelDensityNonUniformNernst
ionChannel - Variable in class org.neuroml.model.ChannelPopulation
ionChannel - Variable in class org.neuroml.model.NeuroMLDocument
IonChannel - Class in org.neuroml.model: Note **ionChannel** and **ionChannelHH** are currently functionally identical.
IonChannel() - Constructor for class org.neuroml.model.IonChannel
ionChannelHH - Variable in class org.neuroml.model.NeuroMLDocument
IonChannelHH - Class in org.neuroml.model: Note **ionChannel** and **ionChannelHH** are currently functionally identical.
IonChannelHH() - Constructor for class org.neuroml.model.IonChannelHH
ionChannelKS - Variable in class org.neuroml.model.NeuroMLDocument
IonChannelKS - Class in org.neuroml.model: A kinetic scheme based ion channel with multiple **gateKS** s, each of which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them \n :param conductance: :type conductance: conductance
IonChannelKS() - Constructor for class org.neuroml.model.IonChannelKS
IonChannelScalable - Class in org.neuroml.model: Java class for IonChannelScalable complex type.
IonChannelScalable() - Constructor for class org.neuroml.model.IonChannelScalable
ionChannelVShift - Variable in class org.neuroml.model.NeuroMLDocument
IonChannelVShift - Class in org.neuroml.model: Same as **ionChannel** , but with a **vShift** parameter to change voltage activation of gates.
IonChannelVShift() - Constructor for class org.neuroml.model.IonChannelVShift
iSoma - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
isUnbranchedNonOverlapping(SegmentGroup) - Static method in class org.neuroml.model.util.CellUtils
isValid() - Method in class org.neuroml.model.util.NeuroML2Validator
isWarning() - Method in class org.neuroml.model.util.StandardTest
izhikevich2007Cell - Variable in class org.neuroml.model.NeuroMLDocument
Izhikevich2007Cell - Class in org.neuroml.model: Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press \n :param v0: Initial membrane potential :type v0: voltage :param k: :type k: conductance_per_voltage :param vr: Resting membrane potential :type vr: voltage :param vt: Spike threshold :type vt: voltage :param vpeak: Peak action potential value :type vpeak: voltage :param a: Time scale of recovery variable u :type a: per_time :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v :type b: conductance :param c: After-spike reset value of v :type c: voltage :param d: After-spike increase to u :type d: current :param C: Total capacitance of the cell membrane :type C: capacitance
Izhikevich2007Cell() - Constructor for class org.neuroml.model.Izhikevich2007Cell
izhikevichCell - Variable in class org.neuroml.model.NeuroMLDocument
IzhikevichCell - Class in org.neuroml.model: Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm \n :param v0: Initial membrane potential :type v0: voltage :param a: Time scale of the recovery variable U :type a: none :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V :type b: none :param c: After-spike reset value of V :type c: none :param d: After-spike increase to U :type d: none :param thresh: Spike threshold :type thresh: voltage
IzhikevichCell() - Constructor for class org.neuroml.model.IzhikevichCell

J

j - Variable in class org.neuroml.model.Instance
jaxb - Static variable in class org.neuroml.model.util.NeuroMLConverter

K

k - Variable in class org.neuroml.model.GradedSynapse
k - Variable in class org.neuroml.model.Instance
k - Variable in class org.neuroml.model.Izhikevich2007Cell
KS_STATE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements

L

LATEST_SCHEMA - Static variable in class org.neuroml.model.util.NeuroMLElements
LATEST_SCHEMA_LOCATION - Static variable in class org.neuroml.model.util.NeuroMLElements
LATEST_SCHEMA_VERSION - Static variable in class org.neuroml.model.util.NeuroMLElements
layout - Variable in class org.neuroml.model.Population
Layout - Class in org.neuroml.model: Java class for Layout complex type.
Layout() - Constructor for class org.neuroml.model.Layout
leakConductance - Variable in class org.neuroml.model.IafCell
leakReversal - Variable in class org.neuroml.model.IafCell
leakReversal - Variable in class org.neuroml.model.IafTauCell
LEMSProperty - Class in org.neuroml.model: Java class for LEMS_Property complex type.
LEMSProperty() - Constructor for class org.neuroml.model.LEMSProperty
level - Variable in class org.neuroml.model.util.StandardTest
linearGradedSynapse - Variable in class org.neuroml.model.NeuroMLDocument
LinearGradedSynapse - Class in org.neuroml.model: Behaves just like a one way gap junction.
LinearGradedSynapse() - Constructor for class org.neuroml.model.LinearGradedSynapse
loadNeuroML(File) - Method in class org.neuroml.model.util.NeuroMLConverter
loadNeuroML(File, boolean) - Method in class org.neuroml.model.util.NeuroMLConverter
loadNeuroML(File, boolean, boolean) - Method in class org.neuroml.model.util.NeuroMLConverter
loadNeuroML(File, boolean, boolean, ArrayList<String>) - Method in class org.neuroml.model.util.NeuroMLConverter
loadNeuroML(String) - Method in class org.neuroml.model.util.NeuroMLConverter
loadNeuroML(String, boolean, File) - Method in class org.neuroml.model.util.NeuroMLConverter
loadNeuroML(String, boolean, File, ArrayList<String>) - Method in class org.neuroml.model.util.NeuroMLConverter
loadNeuroMLOptimized(File) - Method in class org.neuroml.model.util.NeuroMLConverter
loadNeuroMLOptimized(File, boolean) - Method in class org.neuroml.model.util.NeuroMLConverter
loadNeuroMLOptimized(String) - Method in class org.neuroml.model.util.NeuroMLConverter
location - Variable in class org.neuroml.model.Instance
Location - Class in org.neuroml.model: Specifies the ( x, y, z ) location of a single **instance** of a component in a **population** \n :param x: :type x: none :param y: :type y: none :param z: :type z: none
Location() - Constructor for class org.neuroml.model.Location
LOCATION - Static variable in class org.neuroml.model.util.NeuroMLElements
LOCATION_X - Static variable in class org.neuroml.model.util.NeuroMLElements
LOCATION_Y - Static variable in class org.neuroml.model.util.NeuroMLElements
LOCATION_Z - Static variable in class org.neuroml.model.util.NeuroMLElements

M

main(String[]) - Static method in class org.neuroml.model.util.CellUtils
main(String[]) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
main(String[]) - Static method in class org.neuroml.model.util.hdf5.NetworkHelper
main(String[]) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
main(String[]) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
main(String[]) - Static method in class org.neuroml.model.util.NeuroML2Validator
main(String[]) - Static method in class org.neuroml.model.util.NeuroMLConverter
marshal(Integer) - Method in class org.neuroml.model.Adapter1
marshal(Integer) - Method in class org.neuroml.model.Adapter2
marshaller - Static variable in class org.neuroml.model.util.NeuroMLConverter
maxISI - Variable in class org.neuroml.model.SpikeGeneratorRandom
member - Variable in class org.neuroml.model.SegmentGroup
Member - Class in org.neuroml.model: A single identified **segment** which is part of the **segmentGroup**
Member() - Constructor for class org.neuroml.model.Member
membraneProperties - Variable in class org.neuroml.model.BiophysicalProperties
MembraneProperties - Class in org.neuroml.model: Properties specific to the membrane, such as the **populations** of channels, **channelDensities,** **specificCapacitance,** etc.
MembraneProperties() - Constructor for class org.neuroml.model.MembraneProperties
membraneProperties2CaPools - Variable in class org.neuroml.model.BiophysicalProperties2CaPools
MembraneProperties2CaPools - Class in org.neuroml.model: Variant of membraneProperties with 2 independent Ca pools
MembraneProperties2CaPools() - Constructor for class org.neuroml.model.MembraneProperties2CaPools
metaid - Variable in class org.neuroml.model.Standalone
metric - Variable in class org.neuroml.model.InhomogeneousParameter
Metric - Enum in org.neuroml.model: Java class for Metric.
midpoint - Variable in class org.neuroml.model.HHRate
midpoint - Variable in class org.neuroml.model.HHTime
midpoint - Variable in class org.neuroml.model.HHVariable
minimumISI - Variable in class org.neuroml.model.SpikeGeneratorRefPoisson
minISI - Variable in class org.neuroml.model.SpikeGeneratorRandom
morphology - Variable in class org.neuroml.model.Cell
morphology - Variable in class org.neuroml.model.NeuroMLDocument
Morphology - Class in org.neuroml.model: The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s
Morphology() - Constructor for class org.neuroml.model.Morphology
morphologyAttr - Variable in class org.neuroml.model.Cell

N

name - Variable in class org.neuroml.model.ComponentType
name - Variable in class org.neuroml.model.Constant
name - Variable in class org.neuroml.model.Exposure
name - Variable in class org.neuroml.model.InstanceRequirement
name - Variable in class org.neuroml.model.NamedDimensionalType
name - Variable in class org.neuroml.model.NamedDimensionalVariable
name - Variable in class org.neuroml.model.Regime
name - Variable in class org.neuroml.model.Segment
NamedDimensionalType - Class in org.neuroml.model: Java class for NamedDimensionalType complex type.
NamedDimensionalType() - Constructor for class org.neuroml.model.NamedDimensionalType
NamedDimensionalVariable - Class in org.neuroml.model: Java class for NamedDimensionalVariable complex type.
NamedDimensionalVariable() - Constructor for class org.neuroml.model.NamedDimensionalVariable
NAMESPACE_URI_VERSION_2 - Static variable in class org.neuroml.model.util.NeuroMLElements
namespaceToPrefixMap - Variable in class org.neuroml.model.util.NeuroMLNamespacePrefixMapper
network - Variable in class org.neuroml.model.NeuroMLDocument
Network - Class in org.neuroml.model: Network containing: **population** s ( potentially of type **populationList** , and so specifying a list of cell **location** s ); **projection** s ( with lists of **connection** s ) and/or **explicitConnection** s; and **inputList** s ( with lists of **input** s ) and/or **explicitInput** s.
Network() - Constructor for class org.neuroml.model.Network
NETWORK - Enum constant in enum org.neuroml.model.NetworkTypes
NETWORK - Static variable in class org.neuroml.model.util.NeuroMLElements
NETWORK_WITH_TEMPERATURE - Enum constant in enum org.neuroml.model.NetworkTypes
NetworkHelper - Class in org.neuroml.model.util.hdf5
NetworkHelper() - Constructor for class org.neuroml.model.util.hdf5.NetworkHelper
NetworkHelper(NeuroMLDocument) - Constructor for class org.neuroml.model.util.hdf5.NetworkHelper
NetworkTypes - Enum in org.neuroml.model: Java class for networkTypes.
neuroLexId - Variable in class org.neuroml.model.BaseCell
neuroLexId - Variable in class org.neuroml.model.BaseConnection
neuroLexId - Variable in class org.neuroml.model.BaseSynapse
neuroLexId - Variable in class org.neuroml.model.IonChannelKS
neuroLexId - Variable in class org.neuroml.model.IonChannelScalable
neuroLexId - Variable in class org.neuroml.model.Network
neuroLexId - Variable in class org.neuroml.model.Population
neuroLexId - Variable in class org.neuroml.model.Segment
neuroLexId - Variable in class org.neuroml.model.SegmentGroup
neuroLexId - Variable in class org.neuroml.model.SynapticConnection
NEUROML_ROOT - Static variable in class org.neuroml.model.util.NeuroMLElements
NEUROML_TOP_LEVEL_CONTENT - Static variable in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
NEUROML2_NEUROLEX_UNBRANCHED_NONOVERLAPPING_SEG_GROUP - Static variable in class org.neuroml.model.util.CellUtils
neuroml2ToXml(NeuroMLDocument) - Method in class org.neuroml.model.util.NeuroMLConverter
neuroml2ToXml(NeuroMLDocument, String) - Method in class org.neuroml.model.util.NeuroMLConverter
NeuroML2Validator - Class in org.neuroml.model.util
NeuroML2Validator() - Constructor for class org.neuroml.model.util.NeuroML2Validator
NeuroMLConverter - Class in org.neuroml.model.util
NeuroMLConverter() - Constructor for class org.neuroml.model.util.NeuroMLConverter
NeuroMLDocument - Class in org.neuroml.model: Java class for NeuroMLDocument complex type.
NeuroMLDocument() - Constructor for class org.neuroml.model.NeuroMLDocument
NeuroMLElements - Class in org.neuroml.model.util
NeuroMLElements() - Constructor for class org.neuroml.model.util.NeuroMLElements
NeuroMLException - Exception in org.neuroml.model.util
NeuroMLException(String) - Constructor for exception org.neuroml.model.util.NeuroMLException
NeuroMLException(String, Throwable) - Constructor for exception org.neuroml.model.util.NeuroMLException
NeuroMLException(Throwable) - Constructor for exception org.neuroml.model.util.NeuroMLException
NeuroMLHDF5Reader - Class in org.neuroml.model.util.hdf5
NeuroMLHDF5Reader() - Constructor for class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
NeuroMLHDF5Writer - Class in org.neuroml.model.util.hdf5
NeuroMLHDF5Writer() - Constructor for class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
NeuroMLNamespacePrefixMapper - Class in org.neuroml.model.util
NeuroMLNamespacePrefixMapper() - Constructor for class org.neuroml.model.util.NeuroMLNamespacePrefixMapper
NO_WARNINGS - Static variable in class org.neuroml.model.util.NeuroML2Validator
normalizationEnd - Variable in class org.neuroml.model.DistalDetails
notes - Variable in class org.neuroml.model.GateFractional
notes - Variable in class org.neuroml.model.GateFractionalSubgate
notes - Variable in class org.neuroml.model.GateHHInstantaneous
notes - Variable in class org.neuroml.model.GateHHRates
notes - Variable in class org.neuroml.model.GateHHRatesInf
notes - Variable in class org.neuroml.model.GateHHRatesTau
notes - Variable in class org.neuroml.model.GateHHRatesTauInf
notes - Variable in class org.neuroml.model.GateHHTauInf
notes - Variable in class org.neuroml.model.GateHHUndetermined
notes - Variable in class org.neuroml.model.GateKS
notes - Variable in class org.neuroml.model.SegmentGroup
notes - Variable in class org.neuroml.model.Standalone
number - Variable in class org.neuroml.model.ChannelPopulation
number - Variable in class org.neuroml.model.RandomLayout
number - Variable in class org.neuroml.model.UnstructuredLayout

O

ObjectFactory - Class in org.neuroml.model: This object contains factory methods for each Java content interface and Java element interface generated in the org.neuroml.model package.
ObjectFactory() - Constructor for class org.neuroml.model.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.neuroml.model
onCondition - Variable in class org.neuroml.model.Dynamics
onCondition - Variable in class org.neuroml.model.Regime
OnCondition - Class in org.neuroml.model: Java class for OnCondition complex type.
OnCondition() - Constructor for class org.neuroml.model.OnCondition
onEntry - Variable in class org.neuroml.model.Regime
OnEntry - Class in org.neuroml.model: Java class for OnEntry complex type.
OnEntry() - Constructor for class org.neuroml.model.OnEntry
onEvent - Variable in class org.neuroml.model.Dynamics
OnEvent - Class in org.neuroml.model: Java class for OnEvent complex type.
OnEvent() - Constructor for class org.neuroml.model.OnEvent
onStart - Variable in class org.neuroml.model.Dynamics
OnStart - Class in org.neuroml.model: Java class for OnStart complex type.
OnStart() - Constructor for class org.neuroml.model.OnStart
open(H5File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
openForRead(File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
openH5file(File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
openState - Variable in class org.neuroml.model.GateKS
OpenState - Class in org.neuroml.model: A **KSState** with **relativeConductance** of 1 \n :param relativeConductance: :type relativeConductance: none
OpenState() - Constructor for class org.neuroml.model.OpenState
ORG_NEUROML_MODEL_VERSION - Static variable in class org.neuroml.model.util.NeuroMLElements
org.neuroml.model - package org.neuroml.model
org.neuroml.model.util - package org.neuroml.model.util
org.neuroml.model.util.hdf5 - package org.neuroml.model.util.hdf5

P

parameter - Variable in class org.neuroml.model.ComponentType
parameter - Variable in class org.neuroml.model.VariableParameter
Parameter - Class in org.neuroml.model: Java class for Parameter complex type.
Parameter() - Constructor for class org.neuroml.model.Parameter
parent - Variable in class org.neuroml.model.Segment
parse(File, boolean) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
parse(File, boolean, ArrayList<String>) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
parse(File, boolean, ArrayList<String>, boolean) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
parse2Ddataset(Dataset) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
parseAttribute(Attribute, String, Properties, boolean) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
parseDatasetForAttributes(Dataset) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
parseGroup(Group) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
parseGroupForAttributes(Group) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
parseOptimized(File) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
parseOptimized(File, boolean) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
path - Variable in class org.neuroml.model.SegmentGroup
Path - Class in org.neuroml.model: Include all the **segment** s between those specified by **from** and **to** , inclusive
Path() - Constructor for class org.neuroml.model.Path
PATH_LENGTH_FROM_ROOT - Enum constant in enum org.neuroml.model.Metric
period - Variable in class org.neuroml.model.SineGenerator
period - Variable in class org.neuroml.model.SineGeneratorDL
period - Variable in class org.neuroml.model.SpikeGenerator
permeability - Variable in class org.neuroml.model.ChannelDensityGHK
phase - Variable in class org.neuroml.model.SineGenerator
phase - Variable in class org.neuroml.model.SineGeneratorDL
phi - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
pinskyRinzelCA3Cell - Variable in class org.neuroml.model.NeuroMLDocument
PinskyRinzelCA3Cell - Class in org.neuroml.model: Reduced CA3 cell model from Pinsky, P.
PinskyRinzelCA3Cell() - Constructor for class org.neuroml.model.PinskyRinzelCA3Cell
plasticityMechanism - Variable in class org.neuroml.model.BlockingPlasticSynapse
PlasticityMechanism - Class in org.neuroml.model: Java class for PlasticityMechanism complex type.
PlasticityMechanism() - Constructor for class org.neuroml.model.PlasticityMechanism
PlasticityTypes - Enum in org.neuroml.model: Java class for PlasticityTypes.
POINT_CURR_CURRENT - Static variable in class org.neuroml.model.util.NeuroMLElements
Point3DWithDiam - Class in org.neuroml.model: Base type for ComponentTypes which specify an ( **x,** **y,** **z** ) coordinate along with a **diameter.** Note: no dimension used in the attributes for these coordinates! These are assumed to have dimension micrometer ( 10^-6 m ).
Point3DWithDiam() - Constructor for class org.neuroml.model.Point3DWithDiam
poissonFiringSynapse - Variable in class org.neuroml.model.NeuroMLDocument
PoissonFiringSynapse - Class in org.neuroml.model: Poisson spike generator firing at **averageRate,** which is connected to single **synapse** that is triggered every time a spike is generated, producing an input current.
PoissonFiringSynapse() - Constructor for class org.neuroml.model.PoissonFiringSynapse
population - Variable in class org.neuroml.model.InputList
population - Variable in class org.neuroml.model.Network
Population - Class in org.neuroml.model: A population of components, with just one parameter for the **size,** i.
Population() - Constructor for class org.neuroml.model.Population
POPULATION - Enum constant in enum org.neuroml.model.PopulationTypes
POPULATION - Static variable in class org.neuroml.model.util.NeuroMLElements
POPULATION_COMPONENT - Static variable in class org.neuroml.model.util.NeuroMLElements
POPULATION_LIST - Enum constant in enum org.neuroml.model.PopulationTypes
POPULATION_LIST - Static variable in class org.neuroml.model.util.NeuroMLElements
POPULATION_SIZE - Static variable in class org.neuroml.model.util.NeuroMLElements
populationHasPositions(String) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
PopulationTypes - Enum in org.neuroml.model: Java class for populationTypes.
port - Variable in class org.neuroml.model.EventOut
port - Variable in class org.neuroml.model.OnEvent
postCell - Variable in class org.neuroml.model.BaseConnectionNewFormat
postCellId - Variable in class org.neuroml.model.BaseConnectionOldFormat
postComponent - Variable in class org.neuroml.model.ContinuousConnection
postFractionAlong - Variable in class org.neuroml.model.BaseConnectionNewFormat
postFractionAlong - Variable in class org.neuroml.model.BaseConnectionOldFormat
postSegment - Variable in class org.neuroml.model.BaseConnectionNewFormat
postSegmentId - Variable in class org.neuroml.model.BaseConnectionOldFormat
postsynapticPopulation - Variable in class org.neuroml.model.BaseProjection
pp - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
preCell - Variable in class org.neuroml.model.BaseConnectionNewFormat
preCellId - Variable in class org.neuroml.model.BaseConnectionOldFormat
preComponent - Variable in class org.neuroml.model.ContinuousConnection
preFractionAlong - Variable in class org.neuroml.model.BaseConnectionNewFormat
preFractionAlong - Variable in class org.neuroml.model.BaseConnectionOldFormat
preSegment - Variable in class org.neuroml.model.BaseConnectionNewFormat
preSegmentId - Variable in class org.neuroml.model.BaseConnectionOldFormat
presynapticPopulation - Variable in class org.neuroml.model.BaseProjection
projection - Variable in class org.neuroml.model.Network
Projection - Class in org.neuroml.model: Projection from one population, **presynapticPopulation** to another, **postsynapticPopulation,** through **synapse.** Contains lists of **connection** or **connectionWD** elements.
Projection() - Constructor for class org.neuroml.model.Projection
PROJECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
property - Variable in class org.neuroml.model.ComponentType
property - Variable in class org.neuroml.model.SegmentGroup
property - Variable in class org.neuroml.model.Standalone
Property - Class in org.neuroml.model: A property ( a **tag** and **value** pair ), which can be on any **baseStandalone** either as a direct child, or within an **Annotation** .
Property() - Constructor for class org.neuroml.model.Property
proximal - Variable in class org.neuroml.model.InhomogeneousParameter
proximal - Variable in class org.neuroml.model.Segment
ProximalDetails - Class in org.neuroml.model: What to do at the proximal point when creating an inhomogeneous parameter
ProximalDetails() - Constructor for class org.neuroml.model.ProximalDetails
PULSE_GENERATOR_CURRENT - Static variable in class org.neuroml.model.util.NeuroMLElements
PULSE_GENERATOR_CURRENT_DL - Static variable in class org.neuroml.model.util.NeuroMLElements
pulseGenerator - Variable in class org.neuroml.model.CompoundInput
pulseGenerator - Variable in class org.neuroml.model.NeuroMLDocument
PulseGenerator - Class in org.neuroml.model: Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set \n :param delay: Delay before change in current.
PulseGenerator() - Constructor for class org.neuroml.model.PulseGenerator
pulseGeneratorDL - Variable in class org.neuroml.model.CompoundInputDL
pulseGeneratorDL - Variable in class org.neuroml.model.NeuroMLDocument
PulseGeneratorDL - Class in org.neuroml.model: Dimensionless equivalent of **pulseGenerator** .
PulseGeneratorDL() - Constructor for class org.neuroml.model.PulseGeneratorDL

Q

q10ConductanceScaling - Variable in class org.neuroml.model.IonChannelScalable
Q10ConductanceScaling - Class in org.neuroml.model: A value for the conductance scaling which varies as a standard function of the difference between the current temperature, **temperature,** and the temperature at which the conductance was originally determined, **experimentalTemp** \n :param q10Factor: :type q10Factor: none :param experimentalTemp: :type experimentalTemp: temperature
Q10ConductanceScaling() - Constructor for class org.neuroml.model.Q10ConductanceScaling
q10Factor - Variable in class org.neuroml.model.Q10ConductanceScaling
q10Factor - Variable in class org.neuroml.model.Q10Settings
q10Settings - Variable in class org.neuroml.model.GateFractional
q10Settings - Variable in class org.neuroml.model.GateFractionalSubgate
q10Settings - Variable in class org.neuroml.model.GateHHRates
q10Settings - Variable in class org.neuroml.model.GateHHRatesInf
q10Settings - Variable in class org.neuroml.model.GateHHRatesTau
q10Settings - Variable in class org.neuroml.model.GateHHRatesTauInf
q10Settings - Variable in class org.neuroml.model.GateHHTauInf
q10Settings - Variable in class org.neuroml.model.GateHHUndetermined
q10Settings - Variable in class org.neuroml.model.GateKS
Q10Settings - Class in org.neuroml.model: Java class for Q10Settings complex type.
Q10Settings() - Constructor for class org.neuroml.model.Q10Settings
qd0 - Variable in class org.neuroml.model.PinskyRinzelCA3Cell

R

r - Variable in class org.neuroml.model.HindmarshRose1984Cell
rampGenerator - Variable in class org.neuroml.model.CompoundInput
rampGenerator - Variable in class org.neuroml.model.NeuroMLDocument
RampGenerator - Class in org.neuroml.model: Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set \n :param delay: Delay before change in current.
RampGenerator() - Constructor for class org.neuroml.model.RampGenerator
rampGeneratorDL - Variable in class org.neuroml.model.CompoundInputDL
rampGeneratorDL - Variable in class org.neuroml.model.NeuroMLDocument
RampGeneratorDL - Class in org.neuroml.model: Dimensionless equivalent of **rampGenerator** .
RampGeneratorDL() - Constructor for class org.neuroml.model.RampGeneratorDL
random - Variable in class org.neuroml.model.Layout
RandomLayout - Class in org.neuroml.model: Java class for RandomLayout complex type.
RandomLayout() - Constructor for class org.neuroml.model.RandomLayout
rate - Variable in class org.neuroml.model.HHRate
rate - Variable in class org.neuroml.model.HHTime
rate - Variable in class org.neuroml.model.HHVariable
rate - Variable in class org.neuroml.model.SpikeSourcePoisson
ReactionScheme - Class in org.neuroml.model: Java class for ReactionScheme complex type.
ReactionScheme() - Constructor for class org.neuroml.model.ReactionScheme
refract - Variable in class org.neuroml.model.AdExIaFCell
refract - Variable in class org.neuroml.model.IafRefCell
refract - Variable in class org.neuroml.model.IafTauRefCell
regime - Variable in class org.neuroml.model.Dynamics
regime - Variable in class org.neuroml.model.Transition
Regime - Class in org.neuroml.model: Java class for Regime complex type.
Regime() - Constructor for class org.neuroml.model.Regime
region - Variable in class org.neuroml.model.Network
region - Variable in class org.neuroml.model.RandomLayout
Region - Class in org.neuroml.model: Initial attempt to specify 3D region for placing cells.
Region() - Constructor for class org.neuroml.model.Region
requirement - Variable in class org.neuroml.model.ComponentType
Requirement - Class in org.neuroml.model: Java class for Requirement complex type.
Requirement() - Constructor for class org.neuroml.model.Requirement
reset - Variable in class org.neuroml.model.AdExIaFCell
reset - Variable in class org.neuroml.model.IafCell
reset - Variable in class org.neuroml.model.IafTauCell
reset() - Method in class org.neuroml.model.util.NeuroML2Validator
resistivity - Variable in class org.neuroml.model.IntracellularProperties
Resistivity - Class in org.neuroml.model: The resistivity, or specific axial resistance, of the cytoplasm \n :param value: :type value: resistivity
Resistivity() - Constructor for class org.neuroml.model.Resistivity
restingConc - Variable in class org.neuroml.model.DecayingPoolConcentrationModel
restingConc - Variable in class org.neuroml.model.FixedFactorConcentrationModel
returnVoltage - Variable in class org.neuroml.model.VoltageClampTriple
reverseRate - Variable in class org.neuroml.model.GateHHRates
reverseRate - Variable in class org.neuroml.model.GateHHRatesInf
reverseRate - Variable in class org.neuroml.model.GateHHRatesTau
reverseRate - Variable in class org.neuroml.model.GateHHRatesTauInf
reverseRate - Variable in class org.neuroml.model.GateHHUndetermined
ReverseTransition - Class in org.neuroml.model: A reverse only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
ReverseTransition() - Constructor for class org.neuroml.model.ReverseTransition
rho - Variable in class org.neuroml.model.FixedFactorConcentrationModel

S

s - Variable in class org.neuroml.model.HindmarshRose1984Cell
scale - Variable in class org.neuroml.model.HHRate
scale - Variable in class org.neuroml.model.HHTime
scale - Variable in class org.neuroml.model.HHVariable
scalingConc - Variable in class org.neuroml.model.BlockMechanism
scalingVolt - Variable in class org.neuroml.model.BlockMechanism
segment - Variable in class org.neuroml.model.ChannelDensity
segment - Variable in class org.neuroml.model.ChannelDensityGHK
segment - Variable in class org.neuroml.model.ChannelDensityGHK2
segment - Variable in class org.neuroml.model.ChannelDensityNernst
segment - Variable in class org.neuroml.model.ChannelPopulation
segment - Variable in class org.neuroml.model.Member
segment - Variable in class org.neuroml.model.Morphology
segment - Variable in class org.neuroml.model.SegmentEndPoint
segment - Variable in class org.neuroml.model.SegmentParent
Segment - Class in org.neuroml.model: A segment defines the smallest unit within a possibly branching structure ( **morphology** ), such as a dendrite or axon.
Segment() - Constructor for class org.neuroml.model.Segment
SEGMENT_GROUP_ALL - Static variable in class org.neuroml.model.util.NeuroMLElements
SegmentEndPoint - Class in org.neuroml.model: Java class for SegmentEndPoint complex type.
SegmentEndPoint() - Constructor for class org.neuroml.model.SegmentEndPoint
segmentGroup - Variable in class org.neuroml.model.ChannelDensity
segmentGroup - Variable in class org.neuroml.model.ChannelDensityGHK
segmentGroup - Variable in class org.neuroml.model.ChannelDensityGHK2
segmentGroup - Variable in class org.neuroml.model.ChannelDensityNernst
segmentGroup - Variable in class org.neuroml.model.ChannelPopulation
segmentGroup - Variable in class org.neuroml.model.Include
segmentGroup - Variable in class org.neuroml.model.InitMembPotential
segmentGroup - Variable in class org.neuroml.model.Morphology
segmentGroup - Variable in class org.neuroml.model.Resistivity
segmentGroup - Variable in class org.neuroml.model.Species
segmentGroup - Variable in class org.neuroml.model.SpecificCapacitance
segmentGroup - Variable in class org.neuroml.model.SpikeThresh
segmentGroup - Variable in class org.neuroml.model.VariableParameter
SegmentGroup - Class in org.neuroml.model: A method to describe a group of **segment** s in a **morphology** , e.
SegmentGroup() - Constructor for class org.neuroml.model.SegmentGroup
segmentId - Variable in class org.neuroml.model.Input
SegmentParent - Class in org.neuroml.model: Java class for SegmentParent complex type.
SegmentParent() - Constructor for class org.neuroml.model.SegmentParent
select - Variable in class org.neuroml.model.CellSet
select - Variable in class org.neuroml.model.DerivedVariable
setA(float) - Method in class org.neuroml.model.EIFCondExpIsfaIsta: Sets the value of the a property.
setA(String) - Method in class org.neuroml.model.AdExIaFCell: Sets the value of the a property.
setA(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Sets the value of the a property.
setA(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the a property.
setA(String) - Method in class org.neuroml.model.Izhikevich2007Cell: Sets the value of the a property.
setA(String) - Method in class org.neuroml.model.IzhikevichCell: Sets the value of the a property.
setActive(double) - Method in class org.neuroml.model.VoltageClampTriple: Sets the value of the active property.
setAlphac(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the alphac property.
setAmplitude(String) - Method in class org.neuroml.model.PulseGenerator: Sets the value of the amplitude property.
setAmplitude(String) - Method in class org.neuroml.model.PulseGeneratorDL: Sets the value of the amplitude property.
setAmplitude(String) - Method in class org.neuroml.model.SineGenerator: Sets the value of the amplitude property.
setAmplitude(String) - Method in class org.neuroml.model.SineGeneratorDL: Sets the value of the amplitude property.
setAnnotation(Annotation) - Method in class org.neuroml.model.SegmentGroup: Sets the value of the annotation property.
setAnnotation(Annotation) - Method in class org.neuroml.model.Standalone: Sets the value of the annotation property.
setAverageRate(String) - Method in class org.neuroml.model.PoissonFiringSynapse: Sets the value of the averageRate property.
setAverageRate(String) - Method in class org.neuroml.model.SpikeGeneratorPoisson: Sets the value of the averageRate property.
setAverageRate(String) - Method in class org.neuroml.model.TransientPoissonFiringSynapse: Sets the value of the averageRate property.
setB(float) - Method in class org.neuroml.model.EIFCondExpIsfaIsta: Sets the value of the b property.
setB(String) - Method in class org.neuroml.model.AdExIaFCell: Sets the value of the b property.
setB(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Sets the value of the b property.
setB(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the b property.
setB(String) - Method in class org.neuroml.model.Izhikevich2007Cell: Sets the value of the b property.
setB(String) - Method in class org.neuroml.model.IzhikevichCell: Sets the value of the b property.
setBaseDirectory(File) - Method in class org.neuroml.model.util.NeuroML2Validator
setBasedOn(AllowedSpaces) - Method in class org.neuroml.model.Space: Sets the value of the basedOn property.
setBaselineAmplitude(String) - Method in class org.neuroml.model.RampGenerator: Sets the value of the baselineAmplitude property.
setBaselineAmplitude(String) - Method in class org.neuroml.model.RampGeneratorDL: Sets the value of the baselineAmplitude property.
setBetac(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the betac property.
setBiophysicalProperties(BiophysicalProperties) - Method in class org.neuroml.model.Cell: Sets the value of the biophysicalProperties property.
setBiophysicalProperties2CaPools(BiophysicalProperties2CaPools) - Method in class org.neuroml.model.Cell2CaPools: Sets the value of the biophysicalProperties2CaPools property.
setBiophysicalPropertiesAttr(String) - Method in class org.neuroml.model.Cell: Sets the value of the biophysicalPropertiesAttr property.
setBlockConcentration(String) - Method in class org.neuroml.model.BlockMechanism: Sets the value of the blockConcentration property.
setBlockMechanism(BlockMechanism) - Method in class org.neuroml.model.BlockingPlasticSynapse: Sets the value of the blockMechanism property.
setC(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the c property.
setC(String) - Method in class org.neuroml.model.IafCell: Sets the value of the c property.
setC(String) - Method in class org.neuroml.model.Izhikevich2007Cell: Sets the value of the c property.
setC(String) - Method in class org.neuroml.model.IzhikevichCell: Sets the value of the c property.
setCap(String) - Method in class org.neuroml.model.BaseCellMembPotCap: Sets the value of the cap property.
setCm(float) - Method in class org.neuroml.model.BasePyNNCell: Sets the value of the cm property.
setCm(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the cm property.
setComponent(String) - Method in class org.neuroml.model.InputList: Sets the value of the component property.
setComponent(String) - Method in class org.neuroml.model.Population: Sets the value of the component property.
setConcentrationModel(String) - Method in class org.neuroml.model.Species: Sets the value of the concentrationModel property.
setCondDensity(String) - Method in class org.neuroml.model.ChannelDensity: Sets the value of the condDensity property.
setCondDensity(String) - Method in class org.neuroml.model.ChannelDensityGHK2: Sets the value of the condDensity property.
setCondDensity(String) - Method in class org.neuroml.model.ChannelDensityNernst: Sets the value of the condDensity property.
setCondition(String) - Method in class org.neuroml.model.Case: Sets the value of the condition property.
setConditioningVoltage(String) - Method in class org.neuroml.model.VoltageClampTriple: Sets the value of the conditioningVoltage property.
setConductance(String) - Method in class org.neuroml.model.GapJunction: Sets the value of the conductance property.
setConductance(String) - Method in class org.neuroml.model.GradedSynapse: Sets the value of the conductance property.
setConductance(String) - Method in class org.neuroml.model.IonChannel: Sets the value of the conductance property.
setConductance(String) - Method in class org.neuroml.model.IonChannelKS: Sets the value of the conductance property.
setConductance(String) - Method in class org.neuroml.model.LinearGradedSynapse: Sets the value of the conductance property.
setD(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the d property.
setD(String) - Method in class org.neuroml.model.Izhikevich2007Cell: Sets the value of the d property.
setD(String) - Method in class org.neuroml.model.IzhikevichCell: Sets the value of the d property.
setDecayConstant(String) - Method in class org.neuroml.model.DecayingPoolConcentrationModel: Sets the value of the decayConstant property.
setDecayConstant(String) - Method in class org.neuroml.model.FixedFactorConcentrationModel: Sets the value of the decayConstant property.
setDefaultValue(Double) - Method in class org.neuroml.model.LEMSProperty: Sets the value of the defaultValue property.
setDelay(String) - Method in class org.neuroml.model.ConnectionWD: Sets the value of the delay property.
setDelay(String) - Method in class org.neuroml.model.PulseGenerator: Sets the value of the delay property.
setDelay(String) - Method in class org.neuroml.model.PulseGeneratorDL: Sets the value of the delay property.
setDelay(String) - Method in class org.neuroml.model.RampGenerator: Sets the value of the delay property.
setDelay(String) - Method in class org.neuroml.model.RampGeneratorDL: Sets the value of the delay property.
setDelay(String) - Method in class org.neuroml.model.SineGenerator: Sets the value of the delay property.
setDelay(String) - Method in class org.neuroml.model.SineGeneratorDL: Sets the value of the delay property.
setDelay(String) - Method in class org.neuroml.model.TransientPoissonFiringSynapse: Sets the value of the delay property.
setDelay(String) - Method in class org.neuroml.model.VoltageClamp: Sets the value of the delay property.
setDelay(String) - Method in class org.neuroml.model.VoltageClampTriple: Sets the value of the delay property.
setDelT(String) - Method in class org.neuroml.model.AdExIaFCell: Sets the value of the delT property.
setDelta(String) - Method in class org.neuroml.model.GradedSynapse: Sets the value of the delta property.
setDeltaT(float) - Method in class org.neuroml.model.EIFCondExpIsfaIsta: Sets the value of the deltaT property.
setDescription(String) - Method in class org.neuroml.model.ComponentType: Sets the value of the description property.
setDescription(String) - Method in class org.neuroml.model.Constant: Sets the value of the description property.
setDescription(String) - Method in class org.neuroml.model.Exposure: Sets the value of the description property.
setDescription(String) - Method in class org.neuroml.model.NamedDimensionalType: Sets the value of the description property.
setDescription(String) - Method in class org.neuroml.model.NamedDimensionalVariable: Sets the value of the description property.
setDestination(String) - Method in class org.neuroml.model.ExplicitInput: Sets the value of the destination property.
setDestination(String) - Method in class org.neuroml.model.Input: Sets the value of the destination property.
setDestination(String) - Method in class org.neuroml.model.SynapticConnection: Sets the value of the destination property.
setDiameter(double) - Method in class org.neuroml.model.Point3DWithDiam: Sets the value of the diameter property.
setDimension(String) - Method in class org.neuroml.model.Constant: Sets the value of the dimension property.
setDimension(String) - Method in class org.neuroml.model.Exposure: Sets the value of the dimension property.
setDimension(String) - Method in class org.neuroml.model.NamedDimensionalType: Sets the value of the dimension property.
setDimension(String) - Method in class org.neuroml.model.NamedDimensionalVariable: Sets the value of the dimension property.
setDistal(DistalDetails) - Method in class org.neuroml.model.InhomogeneousParameter: Sets the value of the distal property.
setDistal(Point3DWithDiam) - Method in class org.neuroml.model.Segment: Sets the value of the distal property.
setDuration(String) - Method in class org.neuroml.model.PulseGenerator: Sets the value of the duration property.
setDuration(String) - Method in class org.neuroml.model.PulseGeneratorDL: Sets the value of the duration property.
setDuration(String) - Method in class org.neuroml.model.RampGenerator: Sets the value of the duration property.
setDuration(String) - Method in class org.neuroml.model.RampGeneratorDL: Sets the value of the duration property.
setDuration(String) - Method in class org.neuroml.model.SineGenerator: Sets the value of the duration property.
setDuration(String) - Method in class org.neuroml.model.SineGeneratorDL: Sets the value of the duration property.
setDuration(String) - Method in class org.neuroml.model.SpikeSourcePoisson: Sets the value of the duration property.
setDuration(String) - Method in class org.neuroml.model.TransientPoissonFiringSynapse: Sets the value of the duration property.
setDuration(String) - Method in class org.neuroml.model.VoltageClamp: Sets the value of the duration property.
setDuration(String) - Method in class org.neuroml.model.VoltageClampTriple: Sets the value of the duration property.
setECa(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the eCa property.
setEK(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the ek property.
setEL(String) - Method in class org.neuroml.model.AdExIaFCell: Sets the value of the el property.
setEL(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the el property.
setENa(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the eNa property.
setErev(String) - Method in class org.neuroml.model.BaseConductanceBasedSynapse: Sets the value of the erev property.
setErev(String) - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo: Sets the value of the erev property.
setErev(String) - Method in class org.neuroml.model.ChannelDensity: Sets the value of the erev property.
setErev(String) - Method in class org.neuroml.model.ChannelDensityNonUniform: Sets the value of the erev property.
setErev(String) - Method in class org.neuroml.model.ChannelPopulation: Sets the value of the erev property.
setErev(String) - Method in class org.neuroml.model.GradedSynapse: Sets the value of the erev property.
setERev(float) - Method in class org.neuroml.model.AlphaCondSynapse: Sets the value of the eRev property.
setERev(float) - Method in class org.neuroml.model.ExpCondSynapse: Sets the value of the eRev property.
setERevE(float) - Method in class org.neuroml.model.BasePyNNIaFCondCell: Sets the value of the eRevE property.
setERevE(float) - Method in class org.neuroml.model.HHCondExp: Sets the value of the eRevE property.
setERevI(float) - Method in class org.neuroml.model.BasePyNNIaFCondCell: Sets the value of the eRevI property.
setERevI(float) - Method in class org.neuroml.model.HHCondExp: Sets the value of the eRevI property.
setERevK(float) - Method in class org.neuroml.model.HHCondExp: Sets the value of the eRevK property.
setERevLeak(float) - Method in class org.neuroml.model.HHCondExp: Sets the value of the eRevLeak property.
setERevNa(float) - Method in class org.neuroml.model.HHCondExp: Sets the value of the eRevNa property.
setExperimentalTemp(String) - Method in class org.neuroml.model.Q10ConductanceScaling: Sets the value of the experimentalTemp property.
setExperimentalTemp(String) - Method in class org.neuroml.model.Q10Settings: Sets the value of the experimentalTemp property.
setExposure(String) - Method in class org.neuroml.model.NamedDimensionalVariable: Sets the value of the exposure property.
setExtends(String) - Method in class org.neuroml.model.ComponentType: Sets the value of the extends property.
setExtracellularProperties(String) - Method in class org.neuroml.model.Population: Sets the value of the extracellularProperties property.
setExtracellularProperties(ExtracellularProperties) - Method in class org.neuroml.model.BiophysicalProperties: Sets the value of the extracellularProperties property.
setExtracellularProperties(ExtracellularProperties) - Method in class org.neuroml.model.BiophysicalProperties2CaPools: Sets the value of the extracellularProperties property.
setFinishAmplitude(String) - Method in class org.neuroml.model.RampGenerator: Sets the value of the finishAmplitude property.
setFinishAmplitude(String) - Method in class org.neuroml.model.RampGeneratorDL: Sets the value of the finishAmplitude property.
setFixedQ10(String) - Method in class org.neuroml.model.Q10Settings: Sets the value of the fixedQ10 property.
setForwardRate(HHRate) - Method in class org.neuroml.model.GateHHRates: Sets the value of the forwardRate property.
setForwardRate(HHRate) - Method in class org.neuroml.model.GateHHRatesInf: Sets the value of the forwardRate property.
setForwardRate(HHRate) - Method in class org.neuroml.model.GateHHRatesTau: Sets the value of the forwardRate property.
setForwardRate(HHRate) - Method in class org.neuroml.model.GateHHRatesTauInf: Sets the value of the forwardRate property.
setForwardRate(HHRate) - Method in class org.neuroml.model.GateHHUndetermined: Sets the value of the forwardRate property.
setFractionalConductance(String) - Method in class org.neuroml.model.GateFractionalSubgate: Sets the value of the fractionalConductance property.
setFractionAlong(Float) - Method in class org.neuroml.model.Input: Sets the value of the fractionAlong property.
setFractionAlong(Float) - Method in class org.neuroml.model.SegmentParent: Sets the value of the fractionAlong property.
setFrom(String) - Method in class org.neuroml.model.ForwardTransition: Sets the value of the from property.
setFrom(String) - Method in class org.neuroml.model.ReverseTransition: Sets the value of the from property.
setFrom(String) - Method in class org.neuroml.model.SynapticConnection: Sets the value of the from property.
setFrom(String) - Method in class org.neuroml.model.TauInfTransition: Sets the value of the from property.
setFrom(SegmentEndPoint) - Method in class org.neuroml.model.Path: Sets the value of the from property.
setFrom(SegmentEndPoint) - Method in class org.neuroml.model.SubTree: Sets the value of the from property.
setGAmpa(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the gAmpa property.
setGbarK(float) - Method in class org.neuroml.model.HHCondExp: Sets the value of the gbarK property.
setGbarNa(float) - Method in class org.neuroml.model.HHCondExp: Sets the value of the gbarNa property.
setGbase(String) - Method in class org.neuroml.model.BaseConductanceBasedSynapse: Sets the value of the gbase property.
setGbase1(String) - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo: Sets the value of the gbase1 property.
setGbase2(String) - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo: Sets the value of the gbase2 property.
setGc(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the gc property.
setGCa(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the gCa property.
setGKahp(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the gKahp property.
setGKC(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the gkc property.
setGKdr(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the gKdr property.
setGL(String) - Method in class org.neuroml.model.AdExIaFCell: Sets the value of the gl property.
setGLd(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the gLd property.
setGLeak(float) - Method in class org.neuroml.model.HHCondExp: Sets the value of the gLeak property.
setGLs(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the gLs property.
setGNa(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the gNa property.
setGNmda(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the gNmda property.
setGrid(GridLayout) - Method in class org.neuroml.model.Layout: Sets the value of the grid property.
setHref(String) - Method in class org.neuroml.model.IncludeType: Sets the value of the href property.
setI(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Sets the value of the i property.
setI(String) - Method in class org.neuroml.model.FitzHughNagumoCell: Sets the value of the i property.
setI(BigInteger) - Method in class org.neuroml.model.Instance: Sets the value of the i property.
setIbase(String) - Method in class org.neuroml.model.AlphaCurrentSynapse: Sets the value of the ibase property.
setId(Integer) - Method in class org.neuroml.model.BaseNonNegativeIntegerId: Sets the value of the id property.
setId(String) - Method in class org.neuroml.model.Base: Sets the value of the id property.
setId(BigInteger) - Method in class org.neuroml.model.Instance: Sets the value of the id property.
setIDend(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the iDend property.
setInhomogeneousParameter(String) - Method in class org.neuroml.model.InhomogeneousValue: Sets the value of the inhomogeneousParameter property.
setInhomogeneousValue(InhomogeneousValue) - Method in class org.neuroml.model.VariableParameter: Sets the value of the inhomogeneousValue property.
setInitial(TrueOrFalse) - Method in class org.neuroml.model.Regime: Sets the value of the initial property.
setInitialConcentration(String) - Method in class org.neuroml.model.Species: Sets the value of the initialConcentration property.
setInitialExtConcentration(String) - Method in class org.neuroml.model.Species: Sets the value of the initialExtConcentration property.
setInitReleaseProb(float) - Method in class org.neuroml.model.PlasticityMechanism: Sets the value of the initReleaseProb property.
setInput(String) - Method in class org.neuroml.model.ExplicitInput: Sets the value of the input property.
setInstances(Integer) - Method in class org.neuroml.model.GateFractional: Sets the value of the instances property.
setInstances(Integer) - Method in class org.neuroml.model.GateHHInstantaneous: Sets the value of the instances property.
setInstances(Integer) - Method in class org.neuroml.model.GateHHRates: Sets the value of the instances property.
setInstances(Integer) - Method in class org.neuroml.model.GateHHRatesInf: Sets the value of the instances property.
setInstances(Integer) - Method in class org.neuroml.model.GateHHRatesTau: Sets the value of the instances property.
setInstances(Integer) - Method in class org.neuroml.model.GateHHRatesTauInf: Sets the value of the instances property.
setInstances(Integer) - Method in class org.neuroml.model.GateHHTauInf: Sets the value of the instances property.
setInstances(Integer) - Method in class org.neuroml.model.GateHHUndetermined: Sets the value of the instances property.
setInstances(Integer) - Method in class org.neuroml.model.GateKS: Sets the value of the instances property.
setIntracellularProperties(IntracellularProperties) - Method in class org.neuroml.model.BiophysicalProperties: Sets the value of the intracellularProperties property.
setIntracellularProperties2CaPools(IntracellularProperties2CaPools) - Method in class org.neuroml.model.BiophysicalProperties2CaPools: Sets the value of the intracellularProperties2CaPools property.
setIOffset(float) - Method in class org.neuroml.model.BasePyNNCell: Sets the value of the iOffset property.
setIon(String) - Method in class org.neuroml.model.ChannelDensity: Sets the value of the ion property.
setIon(String) - Method in class org.neuroml.model.ChannelDensityGHK: Sets the value of the ion property.
setIon(String) - Method in class org.neuroml.model.ChannelDensityGHK2: Sets the value of the ion property.
setIon(String) - Method in class org.neuroml.model.ChannelDensityNernst: Sets the value of the ion property.
setIon(String) - Method in class org.neuroml.model.ChannelDensityNonUniform: Sets the value of the ion property.
setIon(String) - Method in class org.neuroml.model.ChannelDensityNonUniformGHK: Sets the value of the ion property.
setIon(String) - Method in class org.neuroml.model.ChannelDensityNonUniformNernst: Sets the value of the ion property.
setIon(String) - Method in class org.neuroml.model.ChannelPopulation: Sets the value of the ion property.
setIon(String) - Method in class org.neuroml.model.DecayingPoolConcentrationModel: Sets the value of the ion property.
setIon(String) - Method in class org.neuroml.model.FixedFactorConcentrationModel: Sets the value of the ion property.
setIon(String) - Method in class org.neuroml.model.Species: Sets the value of the ion property.
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensity: Sets the value of the ionChannel property.
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityGHK: Sets the value of the ionChannel property.
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityGHK2: Sets the value of the ionChannel property.
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityNernst: Sets the value of the ionChannel property.
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityNonUniform: Sets the value of the ionChannel property.
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityNonUniformGHK: Sets the value of the ionChannel property.
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityNonUniformNernst: Sets the value of the ionChannel property.
setIonChannel(String) - Method in class org.neuroml.model.ChannelPopulation: Sets the value of the ionChannel property.
setISoma(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the iSoma property.
setJ(BigInteger) - Method in class org.neuroml.model.Instance: Sets the value of the j property.
setK(String) - Method in class org.neuroml.model.GradedSynapse: Sets the value of the k property.
setK(String) - Method in class org.neuroml.model.Izhikevich2007Cell: Sets the value of the k property.
setK(BigInteger) - Method in class org.neuroml.model.Instance: Sets the value of the k property.
setLayout(Layout) - Method in class org.neuroml.model.Population: Sets the value of the layout property.
setLeakConductance(String) - Method in class org.neuroml.model.IafCell: Sets the value of the leakConductance property.
setLeakReversal(String) - Method in class org.neuroml.model.IafCell: Sets the value of the leakReversal property.
setLeakReversal(String) - Method in class org.neuroml.model.IafTauCell: Sets the value of the leakReversal property.
setLocation(Location) - Method in class org.neuroml.model.Instance: Sets the value of the location property.
setMaxISI(String) - Method in class org.neuroml.model.SpikeGeneratorRandom: Sets the value of the maxISI property.
setMembraneProperties(MembraneProperties) - Method in class org.neuroml.model.BiophysicalProperties: Sets the value of the membraneProperties property.
setMembraneProperties2CaPools(MembraneProperties2CaPools) - Method in class org.neuroml.model.BiophysicalProperties2CaPools: Sets the value of the membraneProperties2CaPools property.
setMetaid(String) - Method in class org.neuroml.model.Standalone: Sets the value of the metaid property.
setMetric(Metric) - Method in class org.neuroml.model.InhomogeneousParameter: Sets the value of the metric property.
setMidpoint(String) - Method in class org.neuroml.model.HHRate: Sets the value of the midpoint property.
setMidpoint(String) - Method in class org.neuroml.model.HHTime: Sets the value of the midpoint property.
setMidpoint(String) - Method in class org.neuroml.model.HHVariable: Sets the value of the midpoint property.
setMinimumISI(String) - Method in class org.neuroml.model.SpikeGeneratorRefPoisson: Sets the value of the minimumISI property.
setMinISI(String) - Method in class org.neuroml.model.SpikeGeneratorRandom: Sets the value of the minISI property.
setMorphology(Morphology) - Method in class org.neuroml.model.Cell: Sets the value of the morphology property.
setMorphologyAttr(String) - Method in class org.neuroml.model.Cell: Sets the value of the morphologyAttr property.
setName(String) - Method in class org.neuroml.model.ComponentType: Sets the value of the name property.
setName(String) - Method in class org.neuroml.model.Constant: Sets the value of the name property.
setName(String) - Method in class org.neuroml.model.Exposure: Sets the value of the name property.
setName(String) - Method in class org.neuroml.model.InstanceRequirement: Sets the value of the name property.
setName(String) - Method in class org.neuroml.model.NamedDimensionalType: Sets the value of the name property.
setName(String) - Method in class org.neuroml.model.NamedDimensionalVariable: Sets the value of the name property.
setName(String) - Method in class org.neuroml.model.Regime: Sets the value of the name property.
setName(String) - Method in class org.neuroml.model.Segment: Sets the value of the name property.
setNeuroLexId(String) - Method in class org.neuroml.model.BaseCell: Sets the value of the neuroLexId property.
setNeuroLexId(String) - Method in class org.neuroml.model.BaseConnection: Sets the value of the neuroLexId property.
setNeuroLexId(String) - Method in class org.neuroml.model.BaseSynapse: Sets the value of the neuroLexId property.
setNeuroLexId(String) - Method in class org.neuroml.model.IonChannelKS: Sets the value of the neuroLexId property.
setNeuroLexId(String) - Method in class org.neuroml.model.IonChannelScalable: Sets the value of the neuroLexId property.
setNeuroLexId(String) - Method in class org.neuroml.model.Network: Sets the value of the neuroLexId property.
setNeuroLexId(String) - Method in class org.neuroml.model.Population: Sets the value of the neuroLexId property.
setNeuroLexId(String) - Method in class org.neuroml.model.Segment: Sets the value of the neuroLexId property.
setNeuroLexId(String) - Method in class org.neuroml.model.SegmentGroup: Sets the value of the neuroLexId property.
setNeuroLexId(String) - Method in class org.neuroml.model.SynapticConnection: Sets the value of the neuroLexId property.
setNeuroMLDocument(NeuroMLDocument) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
setNormalizationEnd(double) - Method in class org.neuroml.model.DistalDetails: Sets the value of the normalizationEnd property.
setNotes(String) - Method in class org.neuroml.model.GateFractional: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.GateFractionalSubgate: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.GateHHInstantaneous: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.GateHHRates: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.GateHHRatesInf: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.GateHHRatesTau: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.GateHHRatesTauInf: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.GateHHTauInf: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.GateHHUndetermined: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.GateKS: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.SegmentGroup: Sets the value of the notes property.
setNotes(String) - Method in class org.neuroml.model.Standalone: Sets the value of the notes property.
setNumber(Integer) - Method in class org.neuroml.model.ChannelPopulation: Sets the value of the number property.
setNumber(BigInteger) - Method in class org.neuroml.model.RandomLayout: Sets the value of the number property.
setNumber(BigInteger) - Method in class org.neuroml.model.UnstructuredLayout: Sets the value of the number property.
setOnEntry(OnEntry) - Method in class org.neuroml.model.Regime: Sets the value of the onEntry property.
setOnStart(OnStart) - Method in class org.neuroml.model.Dynamics: Sets the value of the onStart property.
setParameter(String) - Method in class org.neuroml.model.VariableParameter: Sets the value of the parameter property.
setParent(SegmentParent) - Method in class org.neuroml.model.Segment: Sets the value of the parent property.
setPeriod(String) - Method in class org.neuroml.model.SineGenerator: Sets the value of the period property.
setPeriod(String) - Method in class org.neuroml.model.SineGeneratorDL: Sets the value of the period property.
setPeriod(String) - Method in class org.neuroml.model.SpikeGenerator: Sets the value of the period property.
setPermeability(String) - Method in class org.neuroml.model.ChannelDensityGHK: Sets the value of the permeability property.
setPhase(String) - Method in class org.neuroml.model.SineGenerator: Sets the value of the phase property.
setPhase(String) - Method in class org.neuroml.model.SineGeneratorDL: Sets the value of the phase property.
setPhi(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Sets the value of the phi property.
setPlasticityMechanism(PlasticityMechanism) - Method in class org.neuroml.model.BlockingPlasticSynapse: Sets the value of the plasticityMechanism property.
setPopulation(String) - Method in class org.neuroml.model.InputList: Sets the value of the population property.
setPopulationArray(Population, HashMap<String, Integer>, float[][]) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
setPort(String) - Method in class org.neuroml.model.EventOut: Sets the value of the port property.
setPort(String) - Method in class org.neuroml.model.OnEvent: Sets the value of the port property.
setPostCell(String) - Method in class org.neuroml.model.BaseConnectionNewFormat: Sets the value of the postCell property.
setPostCellId(String) - Method in class org.neuroml.model.BaseConnectionOldFormat: Sets the value of the postCellId property.
setPostComponent(String) - Method in class org.neuroml.model.ContinuousConnection: Sets the value of the postComponent property.
setPostFractionAlong(Float) - Method in class org.neuroml.model.BaseConnectionNewFormat: Sets the value of the postFractionAlong property.
setPostFractionAlong(Float) - Method in class org.neuroml.model.BaseConnectionOldFormat: Sets the value of the postFractionAlong property.
setPostSegment(Integer) - Method in class org.neuroml.model.BaseConnectionNewFormat: Sets the value of the postSegment property.
setPostSegmentId(Integer) - Method in class org.neuroml.model.BaseConnectionOldFormat: Sets the value of the postSegmentId property.
setPostsynapticPopulation(String) - Method in class org.neuroml.model.BaseProjection: Sets the value of the postsynapticPopulation property.
setPp(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the pp property.
setPreCell(String) - Method in class org.neuroml.model.BaseConnectionNewFormat: Sets the value of the preCell property.
setPreCellId(String) - Method in class org.neuroml.model.BaseConnectionOldFormat: Sets the value of the preCellId property.
setPreComponent(String) - Method in class org.neuroml.model.ContinuousConnection: Sets the value of the preComponent property.
setPreFractionAlong(Float) - Method in class org.neuroml.model.BaseConnectionNewFormat: Sets the value of the preFractionAlong property.
setPreFractionAlong(Float) - Method in class org.neuroml.model.BaseConnectionOldFormat: Sets the value of the preFractionAlong property.
setPreSegment(Integer) - Method in class org.neuroml.model.BaseConnectionNewFormat: Sets the value of the preSegment property.
setPreSegmentId(Integer) - Method in class org.neuroml.model.BaseConnectionOldFormat: Sets the value of the preSegmentId property.
setPresynapticPopulation(String) - Method in class org.neuroml.model.BaseProjection: Sets the value of the presynapticPopulation property.
setProjectionArray(BaseProjection, HashMap<String, Integer>, float[][]) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
setProximal(Point3DWithDiam) - Method in class org.neuroml.model.Segment: Sets the value of the proximal property.
setProximal(ProximalDetails) - Method in class org.neuroml.model.InhomogeneousParameter: Sets the value of the proximal property.
setQ10Factor(String) - Method in class org.neuroml.model.Q10ConductanceScaling: Sets the value of the q10Factor property.
setQ10Factor(String) - Method in class org.neuroml.model.Q10Settings: Sets the value of the q10Factor property.
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateFractional: Sets the value of the q10Settings property.
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateFractionalSubgate: Sets the value of the q10Settings property.
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHRates: Sets the value of the q10Settings property.
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHRatesInf: Sets the value of the q10Settings property.
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHRatesTau: Sets the value of the q10Settings property.
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHRatesTauInf: Sets the value of the q10Settings property.
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHTauInf: Sets the value of the q10Settings property.
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHUndetermined: Sets the value of the q10Settings property.
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateKS: Sets the value of the q10Settings property.
setQd0(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell: Sets the value of the qd0 property.
setR(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the r property.
setRandom(RandomLayout) - Method in class org.neuroml.model.Layout: Sets the value of the random property.
setRate(Float) - Method in class org.neuroml.model.HHVariable: Sets the value of the rate property.
setRate(String) - Method in class org.neuroml.model.HHRate: Sets the value of the rate property.
setRate(String) - Method in class org.neuroml.model.HHTime: Sets the value of the rate property.
setRate(String) - Method in class org.neuroml.model.SpikeSourcePoisson: Sets the value of the rate property.
setRefract(String) - Method in class org.neuroml.model.AdExIaFCell: Sets the value of the refract property.
setRefract(String) - Method in class org.neuroml.model.IafRefCell: Sets the value of the refract property.
setRefract(String) - Method in class org.neuroml.model.IafTauRefCell: Sets the value of the refract property.
setRegime(String) - Method in class org.neuroml.model.Transition: Sets the value of the regime property.
setRegion(String) - Method in class org.neuroml.model.RandomLayout: Sets the value of the region property.
setReset(String) - Method in class org.neuroml.model.AdExIaFCell: Sets the value of the reset property.
setReset(String) - Method in class org.neuroml.model.IafCell: Sets the value of the reset property.
setReset(String) - Method in class org.neuroml.model.IafTauCell: Sets the value of the reset property.
setRestingConc(String) - Method in class org.neuroml.model.DecayingPoolConcentrationModel: Sets the value of the restingConc property.
setRestingConc(String) - Method in class org.neuroml.model.FixedFactorConcentrationModel: Sets the value of the restingConc property.
setReturnVoltage(String) - Method in class org.neuroml.model.VoltageClampTriple: Sets the value of the returnVoltage property.
setReverseRate(HHRate) - Method in class org.neuroml.model.GateHHRates: Sets the value of the reverseRate property.
setReverseRate(HHRate) - Method in class org.neuroml.model.GateHHRatesInf: Sets the value of the reverseRate property.
setReverseRate(HHRate) - Method in class org.neuroml.model.GateHHRatesTau: Sets the value of the reverseRate property.
setReverseRate(HHRate) - Method in class org.neuroml.model.GateHHRatesTauInf: Sets the value of the reverseRate property.
setReverseRate(HHRate) - Method in class org.neuroml.model.GateHHUndetermined: Sets the value of the reverseRate property.
setRho(String) - Method in class org.neuroml.model.FixedFactorConcentrationModel: Sets the value of the rho property.
setS(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the s property.
setScale(String) - Method in class org.neuroml.model.HHRate: Sets the value of the scale property.
setScale(String) - Method in class org.neuroml.model.HHTime: Sets the value of the scale property.
setScale(String) - Method in class org.neuroml.model.HHVariable: Sets the value of the scale property.
setScalingConc(String) - Method in class org.neuroml.model.BlockMechanism: Sets the value of the scalingConc property.
setScalingVolt(String) - Method in class org.neuroml.model.BlockMechanism: Sets the value of the scalingVolt property.
setSegment(Integer) - Method in class org.neuroml.model.ChannelDensity: Sets the value of the segment property.
setSegment(Integer) - Method in class org.neuroml.model.ChannelPopulation: Sets the value of the segment property.
setSegment(Integer) - Method in class org.neuroml.model.Member: Sets the value of the segment property.
setSegment(Integer) - Method in class org.neuroml.model.SegmentEndPoint: Sets the value of the segment property.
setSegment(Integer) - Method in class org.neuroml.model.SegmentParent: Sets the value of the segment property.
setSegment(String) - Method in class org.neuroml.model.ChannelDensityGHK: Sets the value of the segment property.
setSegment(String) - Method in class org.neuroml.model.ChannelDensityGHK2: Sets the value of the segment property.
setSegment(String) - Method in class org.neuroml.model.ChannelDensityNernst: Sets the value of the segment property.
setSegmentGroup(String) - Method in class org.neuroml.model.ChannelDensity: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.ChannelDensityGHK: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.ChannelDensityGHK2: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.ChannelDensityNernst: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.ChannelPopulation: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.Include: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.InitMembPotential: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.Resistivity: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.Species: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.SpecificCapacitance: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.SpikeThresh: Sets the value of the segmentGroup property.
setSegmentGroup(String) - Method in class org.neuroml.model.VariableParameter: Sets the value of the segmentGroup property.
setSegmentId(Integer) - Method in class org.neuroml.model.Input: Sets the value of the segmentId property.
setSelect(String) - Method in class org.neuroml.model.CellSet: Sets the value of the select property.
setSelect(String) - Method in class org.neuroml.model.DerivedVariable: Sets the value of the select property.
setShellThickness(String) - Method in class org.neuroml.model.DecayingPoolConcentrationModel: Sets the value of the shellThickness property.
setSimpleSeriesResistance(String) - Method in class org.neuroml.model.VoltageClamp: Sets the value of the simpleSeriesResistance property.
setSimpleSeriesResistance(String) - Method in class org.neuroml.model.VoltageClampTriple: Sets the value of the simpleSeriesResistance property.
setSize(Integer) - Method in class org.neuroml.model.Population: Sets the value of the size property.
setSource(String) - Method in class org.neuroml.model.ReactionScheme: Sets the value of the source property.
setSpace(String) - Method in class org.neuroml.model.Layout: Sets the value of the space property.
setSpace(String) - Method in class org.neuroml.model.Region: Sets the value of the space property.
setSpecies(String) - Method in class org.neuroml.model.BlockMechanism: Sets the value of the species property.
setSpecies(String) - Method in class org.neuroml.model.IonChannel: Sets the value of the species property.
setSpecies(String) - Method in class org.neuroml.model.IonChannelKS: Sets the value of the species property.
setSpikeTarget(String) - Method in class org.neuroml.model.PoissonFiringSynapse: Sets the value of the spikeTarget property.
setSpikeTarget(String) - Method in class org.neuroml.model.TimedSynapticInput: Sets the value of the spikeTarget property.
setSpikeTarget(String) - Method in class org.neuroml.model.TransientPoissonFiringSynapse: Sets the value of the spikeTarget property.
setStart(String) - Method in class org.neuroml.model.SpikeSourcePoisson: Sets the value of the start property.
setStartAmplitude(String) - Method in class org.neuroml.model.RampGenerator: Sets the value of the startAmplitude property.
setStartAmplitude(String) - Method in class org.neuroml.model.RampGeneratorDL: Sets the value of the startAmplitude property.
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateFractionalSubgate: Sets the value of the steadyState property.
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateHHInstantaneous: Sets the value of the steadyState property.
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateHHRatesInf: Sets the value of the steadyState property.
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateHHRatesTauInf: Sets the value of the steadyState property.
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateHHTauInf: Sets the value of the steadyState property.
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateHHUndetermined: Sets the value of the steadyState property.
setSteadyState(HHVariable) - Method in class org.neuroml.model.TauInfTransition: Sets the value of the steadyState property.
setStructure(SpaceStructure) - Method in class org.neuroml.model.Space: Sets the value of the structure property.
setSynapse(String) - Method in class org.neuroml.model.ElectricalConnection: Sets the value of the synapse property.
setSynapse(String) - Method in class org.neuroml.model.PoissonFiringSynapse: Sets the value of the synapse property.
setSynapse(String) - Method in class org.neuroml.model.Projection: Sets the value of the synapse property.
setSynapse(String) - Method in class org.neuroml.model.SynapticConnection: Sets the value of the synapse property.
setSynapse(String) - Method in class org.neuroml.model.TimedSynapticInput: Sets the value of the synapse property.
setSynapse(String) - Method in class org.neuroml.model.TransientPoissonFiringSynapse: Sets the value of the synapse property.
setSynapse1(String) - Method in class org.neuroml.model.DoubleSynapse: Sets the value of the synapse1 property.
setSynapse1Path(String) - Method in class org.neuroml.model.DoubleSynapse: Sets the value of the synapse1Path property.
setSynapse2(String) - Method in class org.neuroml.model.DoubleSynapse: Sets the value of the synapse2 property.
setSynapse2Path(String) - Method in class org.neuroml.model.DoubleSynapse: Sets the value of the synapse2Path property.
setTag(String) - Method in class org.neuroml.model.Property: Sets the value of the tag property.
setTarget(String) - Method in class org.neuroml.model.ExplicitInput: Sets the value of the target property.
setTarget(String) - Method in class org.neuroml.model.Input: Sets the value of the target property.
setTargetVoltage(String) - Method in class org.neuroml.model.VoltageClamp: Sets the value of the targetVoltage property.
setTau(String) - Method in class org.neuroml.model.AlphaCurrentSynapse: Sets the value of the tau property.
setTau(String) - Method in class org.neuroml.model.AlphaSynapse: Sets the value of the tau property.
setTau(String) - Method in class org.neuroml.model.HHTime: Sets the value of the tau property.
setTau(String) - Method in class org.neuroml.model.IafTauCell: Sets the value of the tau property.
setTauDecay(String) - Method in class org.neuroml.model.ExpOneSynapse: Sets the value of the tauDecay property.
setTauDecay(String) - Method in class org.neuroml.model.ExpTwoSynapse: Sets the value of the tauDecay property.
setTauDecay1(String) - Method in class org.neuroml.model.ExpThreeSynapse: Sets the value of the tauDecay1 property.
setTauDecay2(String) - Method in class org.neuroml.model.ExpThreeSynapse: Sets the value of the tauDecay2 property.
setTauFac(String) - Method in class org.neuroml.model.PlasticityMechanism: Sets the value of the tauFac property.
setTauM(float) - Method in class org.neuroml.model.BasePyNNIaFCell: Sets the value of the tauM property.
setTauRec(String) - Method in class org.neuroml.model.PlasticityMechanism: Sets the value of the tauRec property.
setTauRefrac(float) - Method in class org.neuroml.model.BasePyNNIaFCell: Sets the value of the tauRefrac property.
setTauRise(String) - Method in class org.neuroml.model.ExpThreeSynapse: Sets the value of the tauRise property.
setTauRise(String) - Method in class org.neuroml.model.ExpTwoSynapse: Sets the value of the tauRise property.
setTauSyn(float) - Method in class org.neuroml.model.BasePynnSynapse: Sets the value of the tauSyn property.
setTauSynE(float) - Method in class org.neuroml.model.BasePyNNCell: Sets the value of the tauSynE property.
setTauSynI(float) - Method in class org.neuroml.model.BasePyNNCell: Sets the value of the tauSynI property.
setTauw(String) - Method in class org.neuroml.model.AdExIaFCell: Sets the value of the tauw property.
setTauW(float) - Method in class org.neuroml.model.EIFCondExpIsfaIsta: Sets the value of the tauW property.
setTemperature(String) - Method in class org.neuroml.model.Network: Sets the value of the temperature property.
setTest(String) - Method in class org.neuroml.model.OnCondition: Sets the value of the test property.
setTestingVoltage(String) - Method in class org.neuroml.model.VoltageClampTriple: Sets the value of the testingVoltage property.
setThresh(String) - Method in class org.neuroml.model.AdExIaFCell: Sets the value of the thresh property.
setThresh(String) - Method in class org.neuroml.model.IafCell: Sets the value of the thresh property.
setThresh(String) - Method in class org.neuroml.model.IafTauCell: Sets the value of the thresh property.
setThresh(String) - Method in class org.neuroml.model.IzhikevichCell: Sets the value of the thresh property.
setTime(String) - Method in class org.neuroml.model.Spike: Sets the value of the time property.
setTimeCourse(HHTime) - Method in class org.neuroml.model.GateFractionalSubgate: Sets the value of the timeCourse property.
setTimeCourse(HHTime) - Method in class org.neuroml.model.GateHHRatesTau: Sets the value of the timeCourse property.
setTimeCourse(HHTime) - Method in class org.neuroml.model.GateHHRatesTauInf: Sets the value of the timeCourse property.
setTimeCourse(HHTime) - Method in class org.neuroml.model.GateHHTauInf: Sets the value of the timeCourse property.
setTimeCourse(HHTime) - Method in class org.neuroml.model.GateHHUndetermined: Sets the value of the timeCourse property.
setTimeCourse(HHTime) - Method in class org.neuroml.model.TauInfTransition: Sets the value of the timeCourse property.
setTo(String) - Method in class org.neuroml.model.ForwardTransition: Sets the value of the to property.
setTo(String) - Method in class org.neuroml.model.ReverseTransition: Sets the value of the to property.
setTo(String) - Method in class org.neuroml.model.SynapticConnection: Sets the value of the to property.
setTo(String) - Method in class org.neuroml.model.TauInfTransition: Sets the value of the to property.
setTo(SegmentEndPoint) - Method in class org.neuroml.model.Path: Sets the value of the to property.
setTo(SegmentEndPoint) - Method in class org.neuroml.model.SubTree: Sets the value of the to property.
setTransition(Transition) - Method in class org.neuroml.model.OnCondition: Sets the value of the transition property.
setTranslationStart(double) - Method in class org.neuroml.model.ProximalDetails: Sets the value of the translationStart property.
setType(String) - Method in class org.neuroml.model.ConcentrationModelD: Sets the value of the type property.
setType(String) - Method in class org.neuroml.model.HHRate: Sets the value of the type property.
setType(String) - Method in class org.neuroml.model.HHTime: Sets the value of the type property.
setType(String) - Method in class org.neuroml.model.HHVariable: Sets the value of the type property.
setType(String) - Method in class org.neuroml.model.InstanceRequirement: Sets the value of the type property.
setType(String) - Method in class org.neuroml.model.Q10Settings: Sets the value of the type property.
setType(String) - Method in class org.neuroml.model.ReactionScheme: Sets the value of the type property.
setType(BlockTypes) - Method in class org.neuroml.model.BlockMechanism: Sets the value of the type property.
setType(ChannelTypes) - Method in class org.neuroml.model.IonChannel: Sets the value of the type property.
setType(GateTypes) - Method in class org.neuroml.model.GateHHUndetermined: Sets the value of the type property.
setType(NetworkTypes) - Method in class org.neuroml.model.Network: Sets the value of the type property.
setType(PlasticityTypes) - Method in class org.neuroml.model.PlasticityMechanism: Sets the value of the type property.
setType(PopulationTypes) - Method in class org.neuroml.model.Population: Sets the value of the type property.
setUnstructured(UnstructuredLayout) - Method in class org.neuroml.model.Layout: Sets the value of the unstructured property.
setV0(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Sets the value of the v0 property.
setV0(String) - Method in class org.neuroml.model.Izhikevich2007Cell: Sets the value of the v0 property.
setV0(String) - Method in class org.neuroml.model.IzhikevichCell: Sets the value of the v0 property.
setValue(String) - Method in class org.neuroml.model.Case: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.Constant: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.DerivedParameter: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.DerivedVariable: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.InhomogeneousValue: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.InitMembPotential: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.Property: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.Resistivity: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.SpecificCapacitance: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.SpikeThresh: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.StateAssignment: Sets the value of the value property.
setValue(String) - Method in class org.neuroml.model.TimeDerivative: Sets the value of the value property.
setVariable(String) - Method in class org.neuroml.model.InhomogeneousParameter: Sets the value of the variable property.
setVariable(String) - Method in class org.neuroml.model.StateAssignment: Sets the value of the variable property.
setVariable(String) - Method in class org.neuroml.model.TimeDerivative: Sets the value of the variable property.
setVerbose(boolean) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
setVerbose(boolean) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
setVInit(float) - Method in class org.neuroml.model.BasePyNNCell: Sets the value of the vInit property.
setVOffset(float) - Method in class org.neuroml.model.HHCondExp: Sets the value of the vOffset property.
setVpeak(String) - Method in class org.neuroml.model.Izhikevich2007Cell: Sets the value of the vpeak property.
setVr(String) - Method in class org.neuroml.model.Izhikevich2007Cell: Sets the value of the vr property.
setVReset(float) - Method in class org.neuroml.model.BasePyNNIaFCell: Sets the value of the vReset property.
setVRest(float) - Method in class org.neuroml.model.BasePyNNIaFCell: Sets the value of the vRest property.
setVScaling(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the vScaling property.
setVShift(String) - Method in class org.neuroml.model.ChannelDensityVShift: Sets the value of the vShift property.
setVShift(String) - Method in class org.neuroml.model.IonChannelVShift: Sets the value of the vShift property.
setVSpike(float) - Method in class org.neuroml.model.EIFCondExpIsfaIsta: Sets the value of the vSpike property.
setVt(String) - Method in class org.neuroml.model.Izhikevich2007Cell: Sets the value of the vt property.
setVT(String) - Method in class org.neuroml.model.AdExIaFCell: Sets the value of the vt property.
setVth(String) - Method in class org.neuroml.model.GradedSynapse: Sets the value of the vth property.
setVThresh(float) - Method in class org.neuroml.model.BasePyNNIaFCell: Sets the value of the vThresh property.
setW0(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell: Sets the value of the w0 property.
setWeight(float) - Method in class org.neuroml.model.ConnectionWD: Sets the value of the weight property.
setWeight(float) - Method in class org.neuroml.model.ContinuousConnectionInstanceW: Sets the value of the weight property.
setWeight(float) - Method in class org.neuroml.model.ElectricalConnectionInstanceW: Sets the value of the weight property.
setWeight(float) - Method in class org.neuroml.model.InputW: Sets the value of the weight property.
setX(double) - Method in class org.neuroml.model.Point3DWithDiam: Sets the value of the x property.
setX(float) - Method in class org.neuroml.model.Location: Sets the value of the x property.
setX0(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the x0 property.
setX1(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the x1 property.
setXSize(BigInteger) - Method in class org.neuroml.model.GridLayout: Sets the value of the xSize property.
setXSpacing(Float) - Method in class org.neuroml.model.SpaceStructure: Sets the value of the xSpacing property.
setXStart(Float) - Method in class org.neuroml.model.SpaceStructure: Sets the value of the xStart property.
setY(double) - Method in class org.neuroml.model.Point3DWithDiam: Sets the value of the y property.
setY(float) - Method in class org.neuroml.model.Location: Sets the value of the y property.
setY0(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the y0 property.
setYSize(BigInteger) - Method in class org.neuroml.model.GridLayout: Sets the value of the ySize property.
setYSpacing(Float) - Method in class org.neuroml.model.SpaceStructure: Sets the value of the ySpacing property.
setYStart(Float) - Method in class org.neuroml.model.SpaceStructure: Sets the value of the yStart property.
setZ(double) - Method in class org.neuroml.model.Point3DWithDiam: Sets the value of the z property.
setZ(float) - Method in class org.neuroml.model.Location: Sets the value of the z property.
setZ0(String) - Method in class org.neuroml.model.HindmarshRose1984Cell: Sets the value of the z0 property.
setZSize(BigInteger) - Method in class org.neuroml.model.GridLayout: Sets the value of the zSize property.
setZSpacing(Float) - Method in class org.neuroml.model.SpaceStructure: Sets the value of the zSpacing property.
setZStart(Float) - Method in class org.neuroml.model.SpaceStructure: Sets the value of the zStart property.
shellThickness - Variable in class org.neuroml.model.DecayingPoolConcentrationModel
silentSynapse - Variable in class org.neuroml.model.NeuroMLDocument
SilentSynapse - Class in org.neuroml.model: Dummy synapse which emits no current.
SilentSynapse() - Constructor for class org.neuroml.model.SilentSynapse
simpleSeriesResistance - Variable in class org.neuroml.model.VoltageClamp
simpleSeriesResistance - Variable in class org.neuroml.model.VoltageClampTriple
sineGenerator - Variable in class org.neuroml.model.CompoundInput
sineGenerator - Variable in class org.neuroml.model.NeuroMLDocument
SineGenerator - Class in org.neuroml.model: Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start.
SineGenerator() - Constructor for class org.neuroml.model.SineGenerator
sineGeneratorDL - Variable in class org.neuroml.model.CompoundInputDL
sineGeneratorDL - Variable in class org.neuroml.model.NeuroMLDocument
SineGeneratorDL - Class in org.neuroml.model: Dimensionless equivalent of **sineGenerator** .
SineGeneratorDL() - Constructor for class org.neuroml.model.SineGeneratorDL
size - Variable in class org.neuroml.model.Population
source - Variable in class org.neuroml.model.ReactionScheme
space - Variable in class org.neuroml.model.Layout
space - Variable in class org.neuroml.model.Network
space - Variable in class org.neuroml.model.Region
Space - Class in org.neuroml.model: Java class for Space complex type.
Space() - Constructor for class org.neuroml.model.Space
SpaceStructure - Class in org.neuroml.model: Java class for SpaceStructure complex type.
SpaceStructure() - Constructor for class org.neuroml.model.SpaceStructure
species - Variable in class org.neuroml.model.BlockMechanism
species - Variable in class org.neuroml.model.ExtracellularProperties
species - Variable in class org.neuroml.model.ExtracellularPropertiesLocal
species - Variable in class org.neuroml.model.IntracellularProperties
species - Variable in class org.neuroml.model.IonChannel
species - Variable in class org.neuroml.model.IonChannelKS
Species - Class in org.neuroml.model: Description of a chemical species identified by **ion,** which has internal, **concentration,** and external, **extConcentration** values for its concentration \n :param initialConcentration: :type initialConcentration: concentration :param initialExtConcentration: :type initialExtConcentration: concentration
Species() - Constructor for class org.neuroml.model.Species
specificCapacitance - Variable in class org.neuroml.model.MembraneProperties
SpecificCapacitance - Class in org.neuroml.model: Capacitance per unit area \n :param value: :type value: specificCapacitance
SpecificCapacitance() - Constructor for class org.neuroml.model.SpecificCapacitance
spike - Variable in class org.neuroml.model.SpikeArray
spike - Variable in class org.neuroml.model.TimedSynapticInput
Spike - Class in org.neuroml.model: Emits a single spike at the specified **time** \n :param time: Time at which to emit one spike event :type time: time
Spike() - Constructor for class org.neuroml.model.Spike
SPIKE_ARRAY - Static variable in class org.neuroml.model.util.NeuroMLElements
SPIKE_GENERATOR - Static variable in class org.neuroml.model.util.NeuroMLElements
spikeArray - Variable in class org.neuroml.model.NeuroMLDocument
SpikeArray - Class in org.neuroml.model: Set of spike ComponentTypes, each emitting one spike at a certain time.
SpikeArray() - Constructor for class org.neuroml.model.SpikeArray
spikeGenerator - Variable in class org.neuroml.model.NeuroMLDocument
SpikeGenerator - Class in org.neuroml.model: Simple generator of spikes at a regular interval set by **period** \n :param period: Time between spikes.
SpikeGenerator() - Constructor for class org.neuroml.model.SpikeGenerator
spikeGeneratorPoisson - Variable in class org.neuroml.model.NeuroMLDocument
SpikeGeneratorPoisson - Class in org.neuroml.model: Generator of spikes whose ISI is distributed according to an exponential PDF with scale: 1 / **averageRate** \n :param averageRate: The average rate at which spikes are emitted :type averageRate: per_time
SpikeGeneratorPoisson() - Constructor for class org.neuroml.model.SpikeGeneratorPoisson
spikeGeneratorRandom - Variable in class org.neuroml.model.NeuroMLDocument
SpikeGeneratorRandom - Class in org.neuroml.model: Generator of spikes with a random interspike interval of at least **minISI** and at most **maxISI** \n :param maxISI: Maximum interspike interval :type maxISI: time :param minISI: Minimum interspike interval :type minISI: time
SpikeGeneratorRandom() - Constructor for class org.neuroml.model.SpikeGeneratorRandom
spikeGeneratorRefPoisson - Variable in class org.neuroml.model.NeuroMLDocument
SpikeGeneratorRefPoisson - Class in org.neuroml.model: Generator of spikes whose ISI distribution is the maximum entropy distribution over [ **minimumISI,** +infinity ) with mean: 1 / **averageRate** \n :param minimumISI: The minimum interspike interval :type minimumISI: time :param averageRate: The average rate at which spikes are emitted :type averageRate: per_time
SpikeGeneratorRefPoisson() - Constructor for class org.neuroml.model.SpikeGeneratorRefPoisson
spikeSourcePoisson - Variable in class org.neuroml.model.NeuroMLDocument
SpikeSourcePoisson - Class in org.neuroml.model: Spike source, generating spikes according to a Poisson process.
SpikeSourcePoisson() - Constructor for class org.neuroml.model.SpikeSourcePoisson
spikeTarget - Variable in class org.neuroml.model.PoissonFiringSynapse
spikeTarget - Variable in class org.neuroml.model.TimedSynapticInput
spikeTarget - Variable in class org.neuroml.model.TransientPoissonFiringSynapse
spikeThresh - Variable in class org.neuroml.model.MembraneProperties
SpikeThresh - Class in org.neuroml.model: Membrane potential at which to emit a spiking event.
SpikeThresh() - Constructor for class org.neuroml.model.SpikeThresh
Standalone - Class in org.neuroml.model: Elements which can stand alone and be referenced by id, e.g.
Standalone() - Constructor for class org.neuroml.model.Standalone
StandardTest - Class in org.neuroml.model.util
StandardTest(int, String) - Constructor for class org.neuroml.model.util.StandardTest
StandardTest(int, String, StandardTest.LEVEL) - Constructor for class org.neuroml.model.util.StandardTest
StandardTest.LEVEL - Enum in org.neuroml.model.util
start - Variable in class org.neuroml.model.SpikeSourcePoisson
startAmplitude - Variable in class org.neuroml.model.RampGenerator
startAmplitude - Variable in class org.neuroml.model.RampGeneratorDL
startGroup(Group) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
stateAssignment - Variable in class org.neuroml.model.OnCondition
stateAssignment - Variable in class org.neuroml.model.OnEntry
stateAssignment - Variable in class org.neuroml.model.OnEvent
stateAssignment - Variable in class org.neuroml.model.OnStart
StateAssignment - Class in org.neuroml.model: Java class for StateAssignment complex type.
StateAssignment() - Constructor for class org.neuroml.model.StateAssignment
stateVariable - Variable in class org.neuroml.model.Dynamics
StateVariable - Class in org.neuroml.model: Java class for StateVariable complex type.
StateVariable() - Constructor for class org.neuroml.model.StateVariable
steadyState - Variable in class org.neuroml.model.GateFractionalSubgate
steadyState - Variable in class org.neuroml.model.GateHHInstantaneous
steadyState - Variable in class org.neuroml.model.GateHHRatesInf
steadyState - Variable in class org.neuroml.model.GateHHRatesTauInf
steadyState - Variable in class org.neuroml.model.GateHHTauInf
steadyState - Variable in class org.neuroml.model.GateHHUndetermined
steadyState - Variable in class org.neuroml.model.TauInfTransition
structure - Variable in class org.neuroml.model.Space
subGate - Variable in class org.neuroml.model.GateFractional
subGate - Variable in class org.neuroml.model.GateHHUndetermined
subTree - Variable in class org.neuroml.model.SegmentGroup
SubTree - Class in org.neuroml.model: Include all the **segment** s distal to that specified by **from** in the **segmentGroup**
SubTree() - Constructor for class org.neuroml.model.SubTree
summary(NeuroMLDocument) - Static method in class org.neuroml.model.util.NeuroMLConverter
summary(NeuroMLDocument, boolean) - Static method in class org.neuroml.model.util.NeuroMLConverter
synapse - Variable in class org.neuroml.model.ElectricalConnection
synapse - Variable in class org.neuroml.model.PoissonFiringSynapse
synapse - Variable in class org.neuroml.model.Projection
synapse - Variable in class org.neuroml.model.SynapticConnection
synapse - Variable in class org.neuroml.model.TimedSynapticInput
synapse - Variable in class org.neuroml.model.TransientPoissonFiringSynapse
SYNAPSE_PORT_IN - Static variable in class org.neuroml.model.util.NeuroMLElements
synapse1 - Variable in class org.neuroml.model.DoubleSynapse
synapse1Path - Variable in class org.neuroml.model.DoubleSynapse
synapse2 - Variable in class org.neuroml.model.DoubleSynapse
synapse2Path - Variable in class org.neuroml.model.DoubleSynapse
synapticConnection - Variable in class org.neuroml.model.Network
SynapticConnection - Class in org.neuroml.model: Explicit event connection between named components, which gets processed via a new instance of a **synapse** component which is created on the target component
SynapticConnection() - Constructor for class org.neuroml.model.SynapticConnection

T

tag - Variable in class org.neuroml.model.Property
target - Variable in class org.neuroml.model.ExplicitInput
target - Variable in class org.neuroml.model.Input
targetVoltage - Variable in class org.neuroml.model.VoltageClamp
tau - Variable in class org.neuroml.model.AlphaCurrentSynapse
tau - Variable in class org.neuroml.model.AlphaSynapse
tau - Variable in class org.neuroml.model.HHTime
tau - Variable in class org.neuroml.model.IafTauCell
tauDecay - Variable in class org.neuroml.model.ExpOneSynapse
tauDecay - Variable in class org.neuroml.model.ExpTwoSynapse
tauDecay1 - Variable in class org.neuroml.model.ExpThreeSynapse
tauDecay2 - Variable in class org.neuroml.model.ExpThreeSynapse
tauFac - Variable in class org.neuroml.model.PlasticityMechanism
TauInfTransition - Class in org.neuroml.model: KS Transition specified in terms of time constant **tau** and steady state **inf**
TauInfTransition() - Constructor for class org.neuroml.model.TauInfTransition
tauM - Variable in class org.neuroml.model.BasePyNNIaFCell
tauRec - Variable in class org.neuroml.model.PlasticityMechanism
tauRefrac - Variable in class org.neuroml.model.BasePyNNIaFCell
tauRise - Variable in class org.neuroml.model.ExpThreeSynapse
tauRise - Variable in class org.neuroml.model.ExpTwoSynapse
tauSyn - Variable in class org.neuroml.model.BasePynnSynapse
tauSynE - Variable in class org.neuroml.model.BasePyNNCell
tauSynI - Variable in class org.neuroml.model.BasePyNNCell
tauw - Variable in class org.neuroml.model.AdExIaFCell
tauW - Variable in class org.neuroml.model.EIFCondExpIsfaIsta
TEMP_NAMESPACE - Static variable in class org.neuroml.model.util.NeuroMLNamespacePrefixMapper
temperature - Variable in class org.neuroml.model.Network
TEMPERATURE - Static variable in class org.neuroml.model.util.NeuroMLElements
TEMPERATURE_DIM - Static variable in class org.neuroml.model.util.NeuroMLElements
test - Variable in class org.neuroml.model.OnCondition
TEST_CONC_MODEL_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_FORMATTING_CELL_ID_IN_CONNECTION - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_INCLUDE_SEGMENT_GROUP_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_INCLUDED_FILES_EXIST - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_ION_CHANNEL_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_MEMBER_SEGMENT_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_NETWORK_REPEATED_IDS - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_NUM_INT_DIVS_SEGMENT_GROUP - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_ONE_SEG_MISSING_PARENT - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_POPULATION_COMPONENT_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_POPULATION_SIZE_MATCHES_INSTANCES - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_POPULATIONS_IN_PROJECTIONS - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_REPEATED_GROUPS - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_REPEATED_IDS - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_SEGMENT_GROUP_IN_BIOPHYSICS_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_SEGMENT_ID_IN_CONNECTION - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_SYNAPSE_IN_PROJECTION - Variable in class org.neuroml.model.util.NeuroML2Validator
TEST_TOP_LEVEL_REPEATED_IDS - Variable in class org.neuroml.model.util.NeuroML2Validator
testingVoltage - Variable in class org.neuroml.model.VoltageClampTriple
testValidity(File, String) - Static method in class org.neuroml.model.util.NeuroML2Validator
testValidity(File, StreamSource) - Static method in class org.neuroml.model.util.NeuroML2Validator
testValidityAgainstNeuroML2Schema(File) - Method in class org.neuroml.model.util.NeuroML2Validator
thresh - Variable in class org.neuroml.model.AdExIaFCell
thresh - Variable in class org.neuroml.model.IafCell
thresh - Variable in class org.neuroml.model.IafTauCell
thresh - Variable in class org.neuroml.model.IzhikevichCell
time - Variable in class org.neuroml.model.Spike
timeCourse - Variable in class org.neuroml.model.GateFractionalSubgate
timeCourse - Variable in class org.neuroml.model.GateHHRatesTau
timeCourse - Variable in class org.neuroml.model.GateHHRatesTauInf
timeCourse - Variable in class org.neuroml.model.GateHHTauInf
timeCourse - Variable in class org.neuroml.model.GateHHUndetermined
timeCourse - Variable in class org.neuroml.model.TauInfTransition
timeDerivative - Variable in class org.neuroml.model.Dynamics
timeDerivative - Variable in class org.neuroml.model.Regime
TimeDerivative - Class in org.neuroml.model: Java class for TimeDerivative complex type.
TimeDerivative() - Constructor for class org.neuroml.model.TimeDerivative
timedSynapticInput - Variable in class org.neuroml.model.NeuroMLDocument
TimedSynapticInput - Class in org.neuroml.model: Spike array connected to a single **synapse,** producing a current triggered by each **spike** in the array.
TimedSynapticInput() - Constructor for class org.neuroml.model.TimedSynapticInput
to - Variable in class org.neuroml.model.ForwardTransition
to - Variable in class org.neuroml.model.Path
to - Variable in class org.neuroml.model.ReverseTransition
to - Variable in class org.neuroml.model.SubTree
to - Variable in class org.neuroml.model.SynapticConnection
to - Variable in class org.neuroml.model.TauInfTransition
toString() - Method in class org.neuroml.model.AdExIaFCell
toString() - Method in class org.neuroml.model.AlphaCondSynapse
toString() - Method in class org.neuroml.model.AlphaCurrentSynapse
toString() - Method in class org.neuroml.model.AlphaCurrSynapse
toString() - Method in class org.neuroml.model.AlphaSynapse
toString() - Method in class org.neuroml.model.Annotation
toString() - Method in class org.neuroml.model.Base
toString() - Method in class org.neuroml.model.BaseCell
toString() - Method in class org.neuroml.model.BaseCellMembPotCap
toString() - Method in class org.neuroml.model.BaseConductanceBasedSynapse
toString() - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
toString() - Method in class org.neuroml.model.BaseConnection
toString() - Method in class org.neuroml.model.BaseConnectionNewFormat
toString() - Method in class org.neuroml.model.BaseConnectionOldFormat
toString() - Method in class org.neuroml.model.BaseCurrentBasedSynapse
toString() - Method in class org.neuroml.model.BaseNonNegativeIntegerId
toString() - Method in class org.neuroml.model.BaseProjection
toString() - Method in class org.neuroml.model.BasePyNNCell
toString() - Method in class org.neuroml.model.BasePyNNIaFCell
toString() - Method in class org.neuroml.model.BasePyNNIaFCondCell
toString() - Method in class org.neuroml.model.BasePynnSynapse
toString() - Method in class org.neuroml.model.BaseSynapse
toString() - Method in class org.neuroml.model.BaseVoltageDepSynapse
toString() - Method in class org.neuroml.model.BaseWithoutId
toString() - Method in class org.neuroml.model.BiophysicalProperties
toString() - Method in class org.neuroml.model.BiophysicalProperties2CaPools
toString() - Method in class org.neuroml.model.BlockingPlasticSynapse
toString() - Method in class org.neuroml.model.BlockMechanism
toString() - Method in class org.neuroml.model.Case
toString() - Method in class org.neuroml.model.Cell
toString() - Method in class org.neuroml.model.Cell2CaPools
toString() - Method in class org.neuroml.model.CellSet
toString() - Method in class org.neuroml.model.ChannelDensity
toString() - Method in class org.neuroml.model.ChannelDensityGHK
toString() - Method in class org.neuroml.model.ChannelDensityGHK2
toString() - Method in class org.neuroml.model.ChannelDensityNernst
toString() - Method in class org.neuroml.model.ChannelDensityNernstCa2
toString() - Method in class org.neuroml.model.ChannelDensityNonUniform
toString() - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
toString() - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
toString() - Method in class org.neuroml.model.ChannelDensityVShift
toString() - Method in class org.neuroml.model.ChannelPopulation
toString() - Method in class org.neuroml.model.ClosedState
toString() - Method in class org.neuroml.model.ComponentType
toString() - Method in class org.neuroml.model.CompoundInput
toString() - Method in class org.neuroml.model.CompoundInputDL
toString() - Method in class org.neuroml.model.ConcentrationModelD
toString() - Method in class org.neuroml.model.ConditionalDerivedVariable
toString() - Method in class org.neuroml.model.Connection
toString() - Method in class org.neuroml.model.ConnectionWD
toString() - Method in class org.neuroml.model.Constant
toString() - Method in class org.neuroml.model.ContinuousConnection
toString() - Method in class org.neuroml.model.ContinuousConnectionInstance
toString() - Method in class org.neuroml.model.ContinuousConnectionInstanceW
toString() - Method in class org.neuroml.model.ContinuousProjection
toString() - Method in class org.neuroml.model.DecayingPoolConcentrationModel
toString() - Method in class org.neuroml.model.DerivedParameter
toString() - Method in class org.neuroml.model.DerivedVariable
toString() - Method in class org.neuroml.model.DistalDetails
toString() - Method in class org.neuroml.model.DoubleSynapse
toString() - Method in class org.neuroml.model.Dynamics
toString() - Method in class org.neuroml.model.EIFCondAlphaIsfaIsta
toString() - Method in class org.neuroml.model.EIFCondExpIsfaIsta
toString() - Method in class org.neuroml.model.ElectricalConnection
toString() - Method in class org.neuroml.model.ElectricalConnectionInstance
toString() - Method in class org.neuroml.model.ElectricalConnectionInstanceW
toString() - Method in class org.neuroml.model.ElectricalProjection
toString() - Method in class org.neuroml.model.EventOut
toString() - Method in class org.neuroml.model.ExpCondSynapse
toString() - Method in class org.neuroml.model.ExpCurrSynapse
toString() - Method in class org.neuroml.model.ExplicitInput
toString() - Method in class org.neuroml.model.ExpOneSynapse
toString() - Method in class org.neuroml.model.Exposure
toString() - Method in class org.neuroml.model.ExpThreeSynapse
toString() - Method in class org.neuroml.model.ExpTwoSynapse
toString() - Method in class org.neuroml.model.ExtracellularProperties
toString() - Method in class org.neuroml.model.ExtracellularPropertiesLocal
toString() - Method in class org.neuroml.model.FitzHughNagumo1969Cell
toString() - Method in class org.neuroml.model.FitzHughNagumoCell
toString() - Method in class org.neuroml.model.FixedFactorConcentrationModel
toString() - Method in class org.neuroml.model.ForwardTransition
toString() - Method in class org.neuroml.model.GapJunction
toString() - Method in class org.neuroml.model.GateFractional
toString() - Method in class org.neuroml.model.GateFractionalSubgate
toString() - Method in class org.neuroml.model.GateHHInstantaneous
toString() - Method in class org.neuroml.model.GateHHRates
toString() - Method in class org.neuroml.model.GateHHRatesInf
toString() - Method in class org.neuroml.model.GateHHRatesTau
toString() - Method in class org.neuroml.model.GateHHRatesTauInf
toString() - Method in class org.neuroml.model.GateHHTauInf
toString() - Method in class org.neuroml.model.GateHHUndetermined
toString() - Method in class org.neuroml.model.GateKS
toString() - Method in class org.neuroml.model.GradedSynapse
toString() - Method in class org.neuroml.model.GridLayout
toString() - Method in class org.neuroml.model.HHCondExp
toString() - Method in class org.neuroml.model.HHRate
toString() - Method in class org.neuroml.model.HHTime
toString() - Method in class org.neuroml.model.HHVariable
toString() - Method in class org.neuroml.model.HindmarshRose1984Cell
toString() - Method in class org.neuroml.model.IafCell
toString() - Method in class org.neuroml.model.IafRefCell
toString() - Method in class org.neuroml.model.IafTauCell
toString() - Method in class org.neuroml.model.IafTauRefCell
toString() - Method in class org.neuroml.model.IFCondAlpha
toString() - Method in class org.neuroml.model.IFCondExp
toString() - Method in class org.neuroml.model.IFCurrAlpha
toString() - Method in class org.neuroml.model.IFCurrExp
toString() - Method in class org.neuroml.model.Include
toString() - Method in class org.neuroml.model.IncludeType
toString() - Method in class org.neuroml.model.InhomogeneousParameter
toString() - Method in class org.neuroml.model.InhomogeneousValue
toString() - Method in class org.neuroml.model.InitMembPotential
toString() - Method in class org.neuroml.model.Input
toString() - Method in class org.neuroml.model.InputList
toString() - Method in class org.neuroml.model.InputW
toString() - Method in class org.neuroml.model.Instance
toString() - Method in class org.neuroml.model.InstanceRequirement
toString() - Method in class org.neuroml.model.IntracellularProperties
toString() - Method in class org.neuroml.model.IntracellularProperties2CaPools
toString() - Method in class org.neuroml.model.IonChannel
toString() - Method in class org.neuroml.model.IonChannelHH
toString() - Method in class org.neuroml.model.IonChannelKS
toString() - Method in class org.neuroml.model.IonChannelScalable
toString() - Method in class org.neuroml.model.IonChannelVShift
toString() - Method in class org.neuroml.model.Izhikevich2007Cell
toString() - Method in class org.neuroml.model.IzhikevichCell
toString() - Method in class org.neuroml.model.Layout
toString() - Method in class org.neuroml.model.LEMSProperty
toString() - Method in class org.neuroml.model.LinearGradedSynapse
toString() - Method in class org.neuroml.model.Location
toString() - Method in class org.neuroml.model.Member
toString() - Method in class org.neuroml.model.MembraneProperties
toString() - Method in class org.neuroml.model.MembraneProperties2CaPools
toString() - Method in class org.neuroml.model.Morphology
toString() - Method in class org.neuroml.model.NamedDimensionalType
toString() - Method in class org.neuroml.model.NamedDimensionalVariable
toString() - Method in class org.neuroml.model.Network
toString() - Method in class org.neuroml.model.NeuroMLDocument
toString() - Method in class org.neuroml.model.OnCondition
toString() - Method in class org.neuroml.model.OnEntry
toString() - Method in class org.neuroml.model.OnEvent
toString() - Method in class org.neuroml.model.OnStart
toString() - Method in class org.neuroml.model.OpenState
toString() - Method in class org.neuroml.model.Parameter
toString() - Method in class org.neuroml.model.Path
toString() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
toString() - Method in class org.neuroml.model.PlasticityMechanism
toString() - Method in class org.neuroml.model.Point3DWithDiam
toString() - Method in class org.neuroml.model.PoissonFiringSynapse
toString() - Method in class org.neuroml.model.Population
toString() - Method in class org.neuroml.model.Projection
toString() - Method in class org.neuroml.model.Property
toString() - Method in class org.neuroml.model.ProximalDetails
toString() - Method in class org.neuroml.model.PulseGenerator
toString() - Method in class org.neuroml.model.PulseGeneratorDL
toString() - Method in class org.neuroml.model.Q10ConductanceScaling
toString() - Method in class org.neuroml.model.Q10Settings
toString() - Method in class org.neuroml.model.RampGenerator
toString() - Method in class org.neuroml.model.RampGeneratorDL
toString() - Method in class org.neuroml.model.RandomLayout
toString() - Method in class org.neuroml.model.ReactionScheme
toString() - Method in class org.neuroml.model.Regime
toString() - Method in class org.neuroml.model.Region
toString() - Method in class org.neuroml.model.Requirement
toString() - Method in class org.neuroml.model.Resistivity
toString() - Method in class org.neuroml.model.ReverseTransition
toString() - Method in class org.neuroml.model.Segment
toString() - Method in class org.neuroml.model.SegmentEndPoint
toString() - Method in class org.neuroml.model.SegmentGroup
toString() - Method in class org.neuroml.model.SegmentParent
toString() - Method in class org.neuroml.model.SilentSynapse
toString() - Method in class org.neuroml.model.SineGenerator
toString() - Method in class org.neuroml.model.SineGeneratorDL
toString() - Method in class org.neuroml.model.Space
toString() - Method in class org.neuroml.model.SpaceStructure
toString() - Method in class org.neuroml.model.Species
toString() - Method in class org.neuroml.model.SpecificCapacitance
toString() - Method in class org.neuroml.model.Spike
toString() - Method in class org.neuroml.model.SpikeArray
toString() - Method in class org.neuroml.model.SpikeGenerator
toString() - Method in class org.neuroml.model.SpikeGeneratorPoisson
toString() - Method in class org.neuroml.model.SpikeGeneratorRandom
toString() - Method in class org.neuroml.model.SpikeGeneratorRefPoisson
toString() - Method in class org.neuroml.model.SpikeSourcePoisson
toString() - Method in class org.neuroml.model.SpikeThresh
toString() - Method in class org.neuroml.model.Standalone
toString() - Method in class org.neuroml.model.StateAssignment
toString() - Method in class org.neuroml.model.StateVariable
toString() - Method in class org.neuroml.model.SubTree
toString() - Method in class org.neuroml.model.SynapticConnection
toString() - Method in class org.neuroml.model.TauInfTransition
toString() - Method in class org.neuroml.model.TimeDerivative
toString() - Method in class org.neuroml.model.TimedSynapticInput
toString() - Method in class org.neuroml.model.TransientPoissonFiringSynapse
toString() - Method in class org.neuroml.model.Transition
toString() - Method in class org.neuroml.model.UnstructuredLayout
toString() - Method in class org.neuroml.model.util.hdf5.NetworkHelper
toString() - Method in class org.neuroml.model.VariableParameter
toString() - Method in class org.neuroml.model.VoltageClamp
toString() - Method in class org.neuroml.model.VoltageClampTriple
transientPoissonFiringSynapse - Variable in class org.neuroml.model.NeuroMLDocument
TransientPoissonFiringSynapse - Class in org.neuroml.model: Poisson spike generator firing at **averageRate** after a **delay** and for a **duration,** connected to single **synapse** that is triggered every time a spike is generated, providing an input current.
TransientPoissonFiringSynapse() - Constructor for class org.neuroml.model.TransientPoissonFiringSynapse
transition - Variable in class org.neuroml.model.OnCondition
Transition - Class in org.neuroml.model: Java class for Transition complex type.
Transition() - Constructor for class org.neuroml.model.Transition
translationStart - Variable in class org.neuroml.model.ProximalDetails
TRUE - Enum constant in enum org.neuroml.model.TrueOrFalse
TrueOrFalse - Enum in org.neuroml.model: Java class for TrueOrFalse.
TSODYKS_MARKRAM_DEP_FAC_MECHANISM - Enum constant in enum org.neuroml.model.PlasticityTypes
TSODYKS_MARKRAM_DEP_MECHANISM - Enum constant in enum org.neuroml.model.PlasticityTypes
type - Variable in class org.neuroml.model.BlockMechanism
type - Variable in class org.neuroml.model.ConcentrationModelD
type - Variable in class org.neuroml.model.GateHHUndetermined
type - Variable in class org.neuroml.model.HHRate
type - Variable in class org.neuroml.model.HHTime
type - Variable in class org.neuroml.model.HHVariable
type - Variable in class org.neuroml.model.InstanceRequirement
type - Variable in class org.neuroml.model.IonChannel
type - Variable in class org.neuroml.model.Network
type - Variable in class org.neuroml.model.PlasticityMechanism
type - Variable in class org.neuroml.model.Population
type - Variable in class org.neuroml.model.Q10Settings
type - Variable in class org.neuroml.model.ReactionScheme

U

UnitsFormatterUtils - Class in org.neuroml.model.util
UnitsFormatterUtils() - Constructor for class org.neuroml.model.util.UnitsFormatterUtils
unmarshal(String) - Method in class org.neuroml.model.Adapter1
unmarshal(String) - Method in class org.neuroml.model.Adapter2
unmarshaller - Static variable in class org.neuroml.model.util.NeuroMLConverter
unstructured - Variable in class org.neuroml.model.Layout
UnstructuredLayout - Class in org.neuroml.model: Java class for UnstructuredLayout complex type.
UnstructuredLayout() - Constructor for class org.neuroml.model.UnstructuredLayout
urlToNeuroML(URL) - Method in class org.neuroml.model.util.NeuroMLConverter

V

v0 - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
v0 - Variable in class org.neuroml.model.Izhikevich2007Cell
v0 - Variable in class org.neuroml.model.IzhikevichCell
VALID_AGAINST_SCHEMA - Static variable in class org.neuroml.model.util.NeuroML2Validator
VALID_AGAINST_SCHEMA_AND_TESTS - Static variable in class org.neuroml.model.util.NeuroML2Validator
VALID_AGAINST_TESTS - Static variable in class org.neuroml.model.util.NeuroML2Validator
validateWithTests(File) - Method in class org.neuroml.model.util.NeuroML2Validator
validateWithTests(NeuroMLDocument) - Method in class org.neuroml.model.util.NeuroML2Validator
value - Variable in class org.neuroml.model.Case
value - Variable in class org.neuroml.model.Constant
value - Variable in class org.neuroml.model.DerivedParameter
value - Variable in class org.neuroml.model.DerivedVariable
value - Variable in class org.neuroml.model.InhomogeneousValue
value - Variable in class org.neuroml.model.InitMembPotential
value - Variable in class org.neuroml.model.Property
value - Variable in class org.neuroml.model.Resistivity
value - Variable in class org.neuroml.model.SpecificCapacitance
value - Variable in class org.neuroml.model.SpikeThresh
value - Variable in class org.neuroml.model.StateAssignment
value - Variable in class org.neuroml.model.TimeDerivative
value() - Method in enum org.neuroml.model.AllowedSpaces
value() - Method in enum org.neuroml.model.BlockTypes
value() - Method in enum org.neuroml.model.ChannelTypes
value() - Method in enum org.neuroml.model.GateTypes
value() - Method in enum org.neuroml.model.Metric
value() - Method in enum org.neuroml.model.NetworkTypes
value() - Method in enum org.neuroml.model.PlasticityTypes
value() - Method in enum org.neuroml.model.PopulationTypes
value() - Method in enum org.neuroml.model.TrueOrFalse
valueOf(String) - Static method in enum org.neuroml.model.AllowedSpaces: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.neuroml.model.BlockTypes: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.neuroml.model.ChannelTypes: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.neuroml.model.GateTypes: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.neuroml.model.Metric: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.neuroml.model.NetworkTypes: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.neuroml.model.PlasticityTypes: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.neuroml.model.PopulationTypes: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.neuroml.model.TrueOrFalse: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.neuroml.model.util.StandardTest.LEVEL: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.neuroml.model.AllowedSpaces: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.neuroml.model.BlockTypes: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.neuroml.model.ChannelTypes: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.neuroml.model.GateTypes: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.neuroml.model.Metric: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.neuroml.model.NetworkTypes: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.neuroml.model.PlasticityTypes: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.neuroml.model.PopulationTypes: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.neuroml.model.TrueOrFalse: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.neuroml.model.util.StandardTest.LEVEL: Returns an array containing the constants of this enum type, in the order they are declared.
variable - Variable in class org.neuroml.model.InhomogeneousParameter
variable - Variable in class org.neuroml.model.StateAssignment
variable - Variable in class org.neuroml.model.TimeDerivative
variableParameter - Variable in class org.neuroml.model.ChannelDensity
variableParameter - Variable in class org.neuroml.model.ChannelDensityNernst
variableParameter - Variable in class org.neuroml.model.ChannelDensityNonUniform
variableParameter - Variable in class org.neuroml.model.ChannelDensityNonUniformGHK
variableParameter - Variable in class org.neuroml.model.ChannelDensityNonUniformNernst
variableParameter - Variable in class org.neuroml.model.ChannelPopulation
VariableParameter - Class in org.neuroml.model: Specifies a **parameter** ( e.
VariableParameter() - Constructor for class org.neuroml.model.VariableParameter
vInit - Variable in class org.neuroml.model.BasePyNNCell
vOffset - Variable in class org.neuroml.model.HHCondExp
VOLTAGE_CONC_DEP_BLOCK_MECHANISM - Enum constant in enum org.neuroml.model.BlockTypes
voltageClamp - Variable in class org.neuroml.model.NeuroMLDocument
VoltageClamp - Class in org.neuroml.model: Voltage clamp.
VoltageClamp() - Constructor for class org.neuroml.model.VoltageClamp
voltageClampTriple - Variable in class org.neuroml.model.NeuroMLDocument
VoltageClampTriple - Class in org.neuroml.model: Voltage clamp with 3 clamp levels.
VoltageClampTriple() - Constructor for class org.neuroml.model.VoltageClampTriple
vpeak - Variable in class org.neuroml.model.Izhikevich2007Cell
vr - Variable in class org.neuroml.model.Izhikevich2007Cell
vReset - Variable in class org.neuroml.model.BasePyNNIaFCell
vRest - Variable in class org.neuroml.model.BasePyNNIaFCell
vScaling - Variable in class org.neuroml.model.HindmarshRose1984Cell
vShift - Variable in class org.neuroml.model.ChannelDensityVShift
vShift - Variable in class org.neuroml.model.IonChannelVShift
vSpike - Variable in class org.neuroml.model.EIFCondExpIsfaIsta
vt - Variable in class org.neuroml.model.AdExIaFCell
vt - Variable in class org.neuroml.model.Izhikevich2007Cell
vth - Variable in class org.neuroml.model.GradedSynapse
vThresh - Variable in class org.neuroml.model.BasePyNNIaFCell

W

w0 - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
WARN_INCLUDE_SEGMENT_GROUP_ORDER - Variable in class org.neuroml.model.util.NeuroML2Validator
WARN_ROOT_ID_0 - Variable in class org.neuroml.model.util.NeuroML2Validator
WARNING - Enum constant in enum org.neuroml.model.util.StandardTest.LEVEL
weight - Variable in class org.neuroml.model.ConnectionWD
weight - Variable in class org.neuroml.model.ContinuousConnectionInstanceW
weight - Variable in class org.neuroml.model.ElectricalConnectionInstanceW
weight - Variable in class org.neuroml.model.InputW

X

x - Variable in class org.neuroml.model.Location
x - Variable in class org.neuroml.model.Point3DWithDiam
x0 - Variable in class org.neuroml.model.HindmarshRose1984Cell
x1 - Variable in class org.neuroml.model.HindmarshRose1984Cell
xmlToMorphology(String) - Method in class org.neuroml.model.util.NeuroMLConverter
xSize - Variable in class org.neuroml.model.GridLayout
xSpacing - Variable in class org.neuroml.model.SpaceStructure
xStart - Variable in class org.neuroml.model.SpaceStructure

Y

y - Variable in class org.neuroml.model.Location
y - Variable in class org.neuroml.model.Point3DWithDiam
y0 - Variable in class org.neuroml.model.HindmarshRose1984Cell
ySize - Variable in class org.neuroml.model.GridLayout
ySpacing - Variable in class org.neuroml.model.SpaceStructure
yStart - Variable in class org.neuroml.model.SpaceStructure

Z

z - Variable in class org.neuroml.model.Location
z - Variable in class org.neuroml.model.Point3DWithDiam
z0 - Variable in class org.neuroml.model.HindmarshRose1984Cell
zSize - Variable in class org.neuroml.model.GridLayout
zSpacing - Variable in class org.neuroml.model.SpaceStructure
zStart - Variable in class org.neuroml.model.SpaceStructure

_

_case - Variable in class org.neuroml.model.ConditionalDerivedVariable
_extends - Variable in class org.neuroml.model.ComponentType

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