Package org.neuroml.model.util.hdf5

Class NeuroMLHDF5Reader

java.lang.Object

org.neuroml.model.util.hdf5.NeuroMLHDF5Reader

public class NeuroMLHDF5Reader
extends Object

Constructor Summary

Constructors

Constructor	Description
NeuroMLHDF5Reader()

Method Summary

Modifier and Type	Method	Description
protected void	dataSet(ncsa.hdf.object.Dataset d)
protected void	endGroup(ncsa.hdf.object.Group g)
NeuroMLDocument	getNeuroMLDocument()
static void	main(String[] args)
NeuroMLDocument	parse(File hdf5File, boolean includeConnections)
NeuroMLDocument	parse(File hdf5File, boolean includeConnections, ArrayList<String> alreadyIncluded)
NeuroMLDocument	parse(File hdf5File, boolean includeConnections, ArrayList<String> alreadyIncluded, boolean includeIncludes)
protected void	parseGroup(ncsa.hdf.object.Group g)
NetworkHelper	parseOptimized(File hdf5File)
NetworkHelper	parseOptimized(File hdf5File, boolean includeIncludes)
void	setVerbose(boolean v)
protected void	startGroup(ncsa.hdf.object.Group g)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

NeuroMLHDF5Reader

public NeuroMLHDF5Reader()
                  throws IOException,
NeuroMLException

Throws:

IOException

NeuroMLException

Method Details

getNeuroMLDocument

public NeuroMLDocument getNeuroMLDocument()

setVerbose

public void setVerbose(boolean v)

parse

public NeuroMLDocument parse(File hdf5File,
 boolean includeConnections)
                      throws Hdf5Exception,
NeuroMLException

Throws:

Hdf5Exception

NeuroMLException

parse

public NeuroMLDocument parse(File hdf5File,
 boolean includeConnections,
 ArrayList<String> alreadyIncluded)
                      throws Hdf5Exception,
NeuroMLException

Throws:

Hdf5Exception

NeuroMLException

parse

public NeuroMLDocument parse(File hdf5File,
 boolean includeConnections,
 ArrayList<String> alreadyIncluded,
 boolean includeIncludes)
                      throws Hdf5Exception,
NeuroMLException

Throws:

Hdf5Exception

NeuroMLException

parseOptimized

public NetworkHelper parseOptimized(File hdf5File)
                             throws Hdf5Exception,
NeuroMLException

Throws:

Hdf5Exception

NeuroMLException

parseOptimized

public NetworkHelper parseOptimized(File hdf5File,
 boolean includeIncludes)
                             throws Hdf5Exception,
NeuroMLException

Throws:

Hdf5Exception

NeuroMLException

startGroup

protected void startGroup(ncsa.hdf.object.Group g)
                   throws Hdf5Exception,
NeuroMLException

Throws:

Hdf5Exception

NeuroMLException

endGroup

protected void endGroup(ncsa.hdf.object.Group g)
                 throws Hdf5Exception

Throws:

Hdf5Exception

dataSet

protected void dataSet(ncsa.hdf.object.Dataset d)
                throws Hdf5Exception

Throws:

Hdf5Exception

parseGroup

protected void parseGroup(ncsa.hdf.object.Group g)
                   throws Hdf5Exception,
NeuroMLException

Throws:

Hdf5Exception

NeuroMLException

main

public static void main(String[] args)