Uses of Class
org.neuroml.model.util.NeuroMLException

Packages that use NeuroMLException

Package	Description
org.neuroml.model.util
org.neuroml.model.util.hdf5

Uses of NeuroMLException in org.neuroml.model.util

Methods in org.neuroml.model.util that throw NeuroMLException

Modifier and Type	Method	Description
static void	NeuroMLConverter.addElementToDocument(NeuroMLDocument nmlDocument, Standalone nmlElement)
static LinkedHashMap<String,Standalone>	NeuroMLConverter.getAllStandaloneElements(NeuroMLDocument nmlDocument)
static Morphology	CellUtils.getCellMorphology(Cell cell, NeuroMLDocument nml2doc)
static double	CellUtils.getFractionAlongSegGroupLength(Cell cell, String segmentGroup, int segmentId, float fractAlongSegment)
static double	CellUtils.getFractionAlongSegGroupLength(Cell cell, NeuroMLDocument nml2doc, String segmentGroup, int segmentId, float fractAlongSegment)
static LinkedHashMap<Integer,Segment>	CellUtils.getIdsVsSegments(Cell cell, NeuroMLDocument nml2doc)
static LinkedHashMap<String,SegmentGroup>	CellUtils.getNamesVsSegmentGroups(Cell cell)
static LinkedHashMap<String,SegmentGroup>	CellUtils.getNamesVsSegmentGroups(Cell cell, NeuroMLDocument nml2doc)
static SegmentGroup	CellUtils.getSegmentGroup(Cell cell, String id)
static LinkedHashMap<SegmentGroup,ArrayList<Integer>>	CellUtils.getSegmentGroupsVsSegIds(Cell cell)
static LinkedHashMap<SegmentGroup,ArrayList<Integer>>	CellUtils.getSegmentGroupsVsSegIds(Cell cell, NeuroMLDocument nml2doc)
static ArrayList<Integer>	CellUtils.getSegmentIdsInGroup(Cell cell, String segmentGroup)
static ArrayList<Segment>	CellUtils.getSegmentsInGroup(Cell cell, String segmentGroup)	Deprecated.
static ArrayList<Segment>	CellUtils.getSegmentsInGroup(Cell cell, LinkedHashMap<String,SegmentGroup> namesVsSegmentGroups, SegmentGroup segmentGroup)
static ArrayList<Segment>	CellUtils.getSegmentsInGroup(Cell cell, NeuroMLDocument nml2doc, String segmentGroup)
static ArrayList<Segment>	CellUtils.getSegmentsInGroup(Cell cell, NeuroMLDocument nml2doc, LinkedHashMap<String,SegmentGroup> namesVsSegmentGroups, SegmentGroup segmentGroup)
static Segment	CellUtils.getSegmentWithId(Cell cell, int segmentId)	Deprecated.
static Segment	CellUtils.getSegmentWithId(Cell cell, NeuroMLDocument nml2doc, int segmentId)
static boolean	CellUtils.hasUnbranchedNonOverlappingInfo(Cell cell)	Deprecated.
static boolean	CellUtils.hasUnbranchedNonOverlappingInfo(Cell cell, NeuroMLDocument nml2doc)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(File xmlFile)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(File xmlFile, boolean includeIncludes)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(File xmlFile, boolean includeIncludes, boolean failOnMissingIncludes)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(File xmlFile, boolean includeIncludes, boolean failOnMissingIncludes, ArrayList<String> alreadyIncluded)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(String nml2Contents)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(String nml2Contents, boolean includeIncludes, File baseDirectoryForIncludes)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(String nml2Contents, boolean includeIncludes, File baseDirectoryForIncludes, ArrayList<String> alreadyIncluded)
NetworkHelper	NeuroMLConverter.loadNeuroMLOptimized(File xmlOrH5File)
NetworkHelper	NeuroMLConverter.loadNeuroMLOptimized(File xmlOrH5File, boolean includeIncludes)
NetworkHelper	NeuroMLConverter.loadNeuroMLOptimized(String xml)
String	NeuroMLConverter.neuroml2ToXml(NeuroMLDocument nml2)
File	NeuroMLConverter.neuroml2ToXml(NeuroMLDocument nml2, String filename)
static String	NeuroMLConverter.summary(NeuroMLDocument nmlDocument)
static String	NeuroMLConverter.summary(NeuroMLDocument nmlDocument, boolean full)
NeuroMLDocument	NeuroMLConverter.urlToNeuroML(URL url)
void	NeuroML2Validator.validateWithTests(File xmlFile)
void	NeuroML2Validator.validateWithTests(NeuroMLDocument nml2doc)
Morphology	NeuroMLConverter.xmlToMorphology(String xmlFile)

Constructors in org.neuroml.model.util that throw NeuroMLException

Modifier	Constructor	Description
	NeuroMLConverter()

Uses of NeuroMLException in org.neuroml.model.util.hdf5

Methods in org.neuroml.model.util.hdf5 that throw NeuroMLException

Modifier and Type	Method	Description
BaseConnectionOldFormat	NetworkHelper.getConnection(String projectionId, int index)
Location	NetworkHelper.getLocation(String populationId, int index, boolean failIfNonSpatialPop)
int	NetworkHelper.getNumberConnections(String projectionId)
String	NetworkHelper.getPopulationComponent(String populationId)
int	NetworkHelper.getPopulationSize(String populationId)
String	NetworkHelper.getPopulationType(String populationId)
NeuroMLDocument	NeuroMLHDF5Reader.parse(File hdf5File, boolean includeConnections)
NeuroMLDocument	NeuroMLHDF5Reader.parse(File hdf5File, boolean includeConnections, ArrayList<String> alreadyIncluded)
NeuroMLDocument	NeuroMLHDF5Reader.parse(File hdf5File, boolean includeConnections, ArrayList<String> alreadyIncluded, boolean includeIncludes)
protected void	NeuroMLHDF5Reader.parseGroup(ncsa.hdf.object.Group g)
NetworkHelper	NeuroMLHDF5Reader.parseOptimized(File hdf5File)
NetworkHelper	NeuroMLHDF5Reader.parseOptimized(File hdf5File, boolean includeIncludes)
boolean	NetworkHelper.populationHasPositions(String populationId)
protected void	NeuroMLHDF5Reader.startGroup(ncsa.hdf.object.Group g)

Constructors in org.neuroml.model.util.hdf5 that throw NeuroMLException

Modifier	Constructor	Description
	NeuroMLHDF5Reader()