Uses of Class
org.neuroml.model.NeuroMLDocument

Packages that use NeuroMLDocument

Package	Description
org.neuroml.model
org.neuroml.model.util
org.neuroml.model.util.hdf5

Uses of NeuroMLDocument in org.neuroml.model

Methods in org.neuroml.model that return NeuroMLDocument

Modifier and Type	Method	Description
NeuroMLDocument	ObjectFactory.createNeuroMLDocument()	Create an instance of NeuroMLDocument

Methods in org.neuroml.model that return types with arguments of type NeuroMLDocument

Modifier and Type	Method	Description
JAXBElement<NeuroMLDocument>	ObjectFactory.createNeuroml(NeuroMLDocument value)	Create an instance of JAXBElement<NeuroMLDocument>

Methods in org.neuroml.model with parameters of type NeuroMLDocument

Modifier and Type	Method	Description
JAXBElement<NeuroMLDocument>	ObjectFactory.createNeuroml(NeuroMLDocument value)	Create an instance of JAXBElement<NeuroMLDocument>

Uses of NeuroMLDocument in org.neuroml.model.util

Methods in org.neuroml.model.util that return NeuroMLDocument

Modifier and Type	Method	Description
NeuroMLDocument	NeuroMLConverter.loadNeuroML(File xmlFile)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(File xmlFile, boolean includeIncludes)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(File xmlFile, boolean includeIncludes, boolean failOnMissingIncludes)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(File xmlFile, boolean includeIncludes, boolean failOnMissingIncludes, ArrayList<String> alreadyIncluded)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(String nml2Contents)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(String nml2Contents, boolean includeIncludes, File baseDirectoryForIncludes)
NeuroMLDocument	NeuroMLConverter.loadNeuroML(String nml2Contents, boolean includeIncludes, File baseDirectoryForIncludes, ArrayList<String> alreadyIncluded)
NeuroMLDocument	NeuroMLConverter.urlToNeuroML(URL url)

Methods in org.neuroml.model.util with parameters of type NeuroMLDocument

Modifier and Type	Method	Description
static void	NeuroMLConverter.addElementToDocument(NeuroMLDocument nmlDocument, Standalone nmlElement)
static LinkedHashMap<String,Standalone>	NeuroMLConverter.getAllStandaloneElements(NeuroMLDocument nmlDocument)
static BiophysicalProperties	CellUtils.getCellBiophysicalProperties(Cell cell, NeuroMLDocument nml2doc)
static Morphology	CellUtils.getCellMorphology(Cell cell, NeuroMLDocument nml2doc)
static double	CellUtils.getFractionAlongSegGroupLength(Cell cell, NeuroMLDocument nml2doc, String segmentGroup, int segmentId, float fractAlongSegment)
static LinkedHashMap<Integer,Segment>	CellUtils.getIdsVsSegments(Cell cell, NeuroMLDocument nml2doc)
static LinkedHashMap<String,SegmentGroup>	CellUtils.getNamesVsSegmentGroups(Cell cell, NeuroMLDocument nml2doc)
static LinkedHashMap<SegmentGroup,ArrayList<Integer>>	CellUtils.getSegmentGroupsVsSegIds(Cell cell, NeuroMLDocument nml2doc)
static ArrayList<Segment>	CellUtils.getSegmentsInGroup(Cell cell, NeuroMLDocument nml2doc, String segmentGroup)
static ArrayList<Segment>	CellUtils.getSegmentsInGroup(Cell cell, NeuroMLDocument nml2doc, LinkedHashMap<String,SegmentGroup> namesVsSegmentGroups, SegmentGroup segmentGroup)
static Segment	CellUtils.getSegmentWithId(Cell cell, NeuroMLDocument nml2doc, int segmentId)
static boolean	CellUtils.hasUnbranchedNonOverlappingInfo(Cell cell, NeuroMLDocument nml2doc)
String	NeuroMLConverter.neuroml2ToXml(NeuroMLDocument nml2)
File	NeuroMLConverter.neuroml2ToXml(NeuroMLDocument nml2, String filename)
static String	NeuroMLConverter.summary(NeuroMLDocument nmlDocument)
static String	NeuroMLConverter.summary(NeuroMLDocument nmlDocument, boolean full)
void	NeuroML2Validator.validateWithTests(NeuroMLDocument nml2doc)

Uses of NeuroMLDocument in org.neuroml.model.util.hdf5

Methods in org.neuroml.model.util.hdf5 that return NeuroMLDocument

Modifier and Type	Method	Description
NeuroMLDocument	NetworkHelper.getNeuroMLDocument()
NeuroMLDocument	NeuroMLHDF5Reader.getNeuroMLDocument()
NeuroMLDocument	NeuroMLHDF5Reader.parse(File hdf5File, boolean includeConnections)
NeuroMLDocument	NeuroMLHDF5Reader.parse(File hdf5File, boolean includeConnections, ArrayList<String> alreadyIncluded)
NeuroMLDocument	NeuroMLHDF5Reader.parse(File hdf5File, boolean includeConnections, ArrayList<String> alreadyIncluded, boolean includeIncludes)

Methods in org.neuroml.model.util.hdf5 with parameters of type NeuroMLDocument

Modifier and Type	Method	Description
static File	NeuroMLHDF5Writer.createNeuroMLH5file(NeuroMLDocument neuroml, File file)
void	NetworkHelper.setNeuroMLDocument(NeuroMLDocument neuroMLDocument)

Constructors in org.neuroml.model.util.hdf5 with parameters of type NeuroMLDocument

Modifier	Constructor	Description
	NetworkHelper(NeuroMLDocument nmlDoc)