A B C D E F G H I J K L M N O P Q R S T U V W X Y
All Classes All Packages

A

ABaseWriter - Class in org.lemsml.export.base

ABaseWriter(Lems, Format) - Constructor for class org.lemsml.export.base.ABaseWriter

ABaseWriter(Lems, Format, boolean) - Constructor for class org.lemsml.export.base.ABaseWriter

ABaseWriter(Lems, Format, File, String) - Constructor for class org.lemsml.export.base.ABaseWriter

ABaseWriter(Lems, Format, File, String, boolean) - Constructor for class org.lemsml.export.base.ABaseWriter

ABS_TOL - org.lemsml.export.dlems.DLemsKeywords

ABSCISSA - org.lemsml.export.dlems.DLemsKeywords

ABSCISSA_AXIS - org.lemsml.export.dlems.DLemsKeywords

ABSTRACT_CELL_MODEL - org.neuroml.export.utils.support.ModelFeature

addAxes(float) - Method in class org.neuroml.export.svg.Network3D

addBoundingBox() - Method in class org.neuroml.export.svg.Network3D

addCell(Cell, float, float, float, String) - Method in class org.neuroml.export.svg.Network3D

addComment(StringBuilder, String) - Method in class org.lemsml.export.base.ABaseWriter

addComment(StringBuilder, String) - Method in class org.lemsml.export.base.AXMLWriter

addComment(StringBuilder, String) - Method in class org.lemsml.export.c.CWriter

addComment(StringBuilder, String) - Method in class org.lemsml.export.dlems.DLemsWriter

addComment(StringBuilder, String) - Method in class org.lemsml.export.matlab.MatlabWriter

addComment(StringBuilder, String) - Method in class org.lemsml.export.modelica.ModelicaWriter

addComment(StringBuilder, String) - Method in class org.lemsml.export.vhdl.VHDLWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.brian.BrianWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.dnsim.DNSimWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.eden.EDENWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.graph.GraphWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.info.InfoWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.jneuroml.JNeuroMLWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.moose.MooseWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.nest.NestWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.netpyne.NetPyNEWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.neuron.NeuronWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.pynn.PyNNWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.vertex.VertexWriter

addComment(StringBuilder, String) - Method in class org.neuroml.export.xpp.XppWriter

addComment(StringBuilder, String, boolean) - Method in class org.lemsml.export.base.AXMLWriter

addComment(StringBuilder, String, boolean) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

addComment(StringBuilder, String, boolean, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

addComment(StringBuilder, String, String) - Method in class org.neuroml.export.neuron.NeuronWriter

addCommentNestML(StringBuilder, String) - Method in class org.neuroml.export.nest.NestWriter

addCompAndChildren(Component, String, String) - Method in class org.neuroml.export.graph.GraphWriter

addCompTypeAndChildrenAndExtends(ComponentType, String, String, int) - Method in class org.neuroml.export.graph.GraphWriter

addLine(int, Vector3D, Vector3D, float, String) - Method in class org.neuroml.export.svg.Network3D

addSupportInfo(Format, ModelFeature, SupportLevelInfo.Level) - Method in class org.neuroml.export.utils.support.SupportLevelInfo

addTextElement(StringBuilder, String, String) - Method in class org.lemsml.export.base.AXMLWriter

addTextElement(StringBuilder, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

ALL - org.neuroml.export.utils.support.ModelFeature

analyseModelFeatures(Lems) - Static method in enum org.neuroml.export.utils.support.ModelFeature

ANeuroMLBaseWriter - Class in org.neuroml.export.base

ANeuroMLBaseWriter(Lems, Format) - Constructor for class org.neuroml.export.base.ANeuroMLBaseWriter

ANeuroMLBaseWriter(Lems, Format, File, String) - Constructor for class org.neuroml.export.base.ANeuroMLBaseWriter

ANeuroMLBaseWriter(Lems, NeuroMLDocument, Format) - Constructor for class org.neuroml.export.base.ANeuroMLBaseWriter

ANeuroMLBaseWriter(Lems, NeuroMLDocument, Format, File, String) - Constructor for class org.neuroml.export.base.ANeuroMLBaseWriter

ANeuroMLBaseWriter(NeuroMLDocument, Format) - Constructor for class org.neuroml.export.base.ANeuroMLBaseWriter

ANeuroMLBaseWriter(NeuroMLDocument, Format, File, String) - Constructor for class org.neuroml.export.base.ANeuroMLBaseWriter

ANeuroMLBaseWriter.CompInfo - Class in org.neuroml.export.base

ANeuroMLXMLWriter - Class in org.neuroml.export.base

ANeuroMLXMLWriter(Lems, Format) - Constructor for class org.neuroml.export.base.ANeuroMLXMLWriter

ANeuroMLXMLWriter(Lems, Format, File, String) - Constructor for class org.neuroml.export.base.ANeuroMLXMLWriter

ANeuroMLXMLWriter(Lems, NeuroMLDocument, Format, File, String) - Constructor for class org.neuroml.export.base.ANeuroMLXMLWriter

ANeuroMLXMLWriter(NeuroMLDocument, Format) - Constructor for class org.neuroml.export.base.ANeuroMLXMLWriter

ARCH_64BIT - Static variable in class org.neuroml.export.utils.Utils

ARCH_I386 - Static variable in class org.neuroml.export.utils.Utils

ARCH_I686 - Static variable in class org.neuroml.export.utils.Utils

ARCH_POWERPC - Static variable in class org.neuroml.export.utils.Utils

ARCH_UMAC - Static variable in class org.neuroml.export.utils.Utils

Architecture - Class in org.lemsml.export.vhdl.writer

Architecture() - Constructor for class org.lemsml.export.vhdl.writer.Architecture

area() - Method in class org.neuroml.export.svg.Cell2D

AXMLWriter - Class in org.lemsml.export.base

AXMLWriter(Lems, Format) - Constructor for class org.lemsml.export.base.AXMLWriter

AXMLWriter(Lems, Format, File, String) - Constructor for class org.lemsml.export.base.AXMLWriter

B

BRIAN - org.neuroml.export.utils.Format

BrianWriter - Class in org.neuroml.export.brian

BrianWriter(Lems) - Constructor for class org.neuroml.export.brian.BrianWriter

BrianWriter(Lems, File, String) - Constructor for class org.neuroml.export.brian.BrianWriter

busLength - Variable in class org.lemsml.export.vhdl.edlems.EDSignal

C

C - org.neuroml.export.utils.Format

cases - Variable in class org.lemsml.export.vhdl.edlems.EDConditionalDerivedVariable

CELL_DEFINITION_SUFFIX - Variable in class org.neuroml.export.netpyne.NetPyNEWriter

CELL_DEFINITION_SUFFIX - Variable in class org.neuroml.export.pynn.PyNNWriter

Cell2D - Class in org.neuroml.export.svg

Cell2D(Network3D, String) - Constructor for class org.neuroml.export.svg.Cell2D

CELLML - org.neuroml.export.utils.Format

CellMLWriter - Class in org.neuroml.export.cellml

CellMLWriter(Lems) - Constructor for class org.neuroml.export.cellml.CellMLWriter

CellMLWriter(Lems, File, String) - Constructor for class org.neuroml.export.cellml.CellMLWriter

cellToJson(Cell, NeuronWriter.SupportedUnits) - Static method in class org.neuroml.export.neuron.JSONCellSerializer

CHANNEL_DENSITY_ON_SEGMENT - org.neuroml.export.utils.support.ModelFeature

CHANNEL_POPULATIONS_CELL_MODEL - org.neuroml.export.utils.support.ModelFeature

ChannelInfoExtractor - Class in org.neuroml.export.info.model

ChannelInfoExtractor(IonChannel) - Constructor for class org.neuroml.export.info.model.ChannelInfoExtractor

ChannelMLGenericHHExpression - Class in org.neuroml.export.info.model

ChannelMLGenericHHExpression(IHHExpression) - Constructor for class org.neuroml.export.info.model.ChannelMLGenericHHExpression

ChannelMLHHExpression - Class in org.neuroml.export.info.model

ChannelMLHHExpression(IHHExpression) - Constructor for class org.neuroml.export.info.model.ChannelMLHHExpression

checkCommentLineLength(String) - Static method in class org.neuroml.export.neuron.NRNUtils

checkConversionSupported(Format, Lems) - Method in class org.neuroml.export.utils.support.SupportLevelInfo

checkForBinaryOperators(String) - Static method in class org.neuroml.export.neuron.NRNUtils

checkForStateVarsAndNested(String, Component, LinkedHashMap<String, LinkedHashMap<String, String>>) - Static method in class org.neuroml.export.neuron.NRNUtils

Children - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

clear() - Method in class org.neuroml.export.svg.RectanglePacker

Clears the packer of all items

color - Variable in class org.neuroml.export.svg.LineND

COLOUR - org.lemsml.export.dlems.DLemsKeywords

comment - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

comment - Variable in class org.neuroml.export.svg.Cell2D

comment - Variable in class org.neuroml.export.svg.Network3D

COMMENT - org.lemsml.export.dlems.DLemsKeywords

CommonLangWriter - Class in org.neuroml.export.utils.visitors

CommonLangWriter() - Constructor for class org.neuroml.export.utils.visitors.CommonLangWriter

compare(String, String) - Method in class org.lemsml.export.vhdl.VHDLUtilComparator

compareTo(Cell2D) - Method in class org.neuroml.export.svg.Cell2D

compileFileWithNeuron(File, boolean) - Static method in class org.neuroml.export.neuron.ProcessManager

CompInfo() - Constructor for class org.neuroml.export.base.ANeuroMLBaseWriter.CompInfo

CompInfo() - Constructor for class org.neuroml.export.neuron.NeuronWriter.CompInfo

COMPONENT - org.lemsml.export.dlems.DLemsKeywords

concentrationFactor - Variable in enum org.neuroml.export.neuron.NeuronWriter.SupportedUnits

COND_BASED_CELL_MODEL - org.neuroml.export.utils.support.ModelFeature

cond2sign(String) - Static method in class org.lemsml.export.vhdl.VHDLEquations

condDensFactor - Variable in enum org.neuroml.export.neuron.NeuronWriter.SupportedUnits

condition - Variable in class org.lemsml.export.vhdl.edlems.EDCase

condition - Variable in class org.lemsml.export.vhdl.edlems.EDCondition

CONDITION - org.lemsml.export.dlems.DLemsKeywords

conditionalderivedvariables - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

conditionalderivedvariables - Variable in class org.lemsml.export.vhdl.edlems.EDRegime

conditionInfo - Variable in class org.neuroml.export.base.ANeuroMLBaseWriter.CompInfo

conditions - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

conditions - Variable in class org.lemsml.export.vhdl.edlems.EDRegime

CONNECTIONS - org.lemsml.export.dlems.DLemsKeywords

Constraints - Class in org.lemsml.export.vhdl.writer

Constraints() - Constructor for class org.lemsml.export.vhdl.writer.Constraints

CONSTRAINTS - org.lemsml.export.vhdl.VHDLWriter.ScriptType

convert() - Method in interface org.lemsml.export.base.IBaseWriter

convert() - Method in class org.lemsml.export.c.CWriter

convert() - Method in class org.lemsml.export.dlems.DLemsWriter

convert() - Method in class org.lemsml.export.matlab.MatlabWriter

convert() - Method in class org.lemsml.export.modelica.ModelicaWriter

convert() - Method in class org.lemsml.export.sedml.SEDMLWriter

convert() - Method in class org.lemsml.export.vhdl.VHDLWriter

convert() - Method in class org.neuroml.export.brian.BrianWriter

convert() - Method in class org.neuroml.export.cellml.CellMLWriter

convert() - Method in class org.neuroml.export.dnsim.DNSimWriter

convert() - Method in class org.neuroml.export.eden.EDENWriter

convert() - Method in class org.neuroml.export.geppetto.GeppettoWriter

convert() - Method in class org.neuroml.export.graph.GraphWriter

convert() - Method in class org.neuroml.export.info.InfoWriter

convert() - Method in class org.neuroml.export.jneuroml.JNeuroMLWriter

convert() - Method in class org.neuroml.export.moose.MooseWriter

convert() - Method in class org.neuroml.export.nest.NestWriter

convert() - Method in class org.neuroml.export.netpyne.NetPyNEWriter

convert() - Method in class org.neuroml.export.neuron.NeuronWriter

convert() - Method in class org.neuroml.export.pynn.PyNNWriter

convert() - Method in class org.neuroml.export.sbml.SBMLWriter

convert() - Method in class org.neuroml.export.svg.SVGWriter

convert() - Method in class org.neuroml.export.vertex.VertexWriter

convert() - Method in class org.neuroml.export.xineml.XineMLWriter

convert() - Method in class org.neuroml.export.xpp.XppWriter

convert(float, String) - Method in class org.lemsml.export.dlems.SIUnitConverter

convert(float, String) - Method in interface org.lemsml.export.dlems.UnitConverter

convert(float, String) - Method in class org.neuroml.export.neuron.NRNUtils

convertCellWithMorphology(Component) - Method in class org.neuroml.export.neuron.NeuronWriter

convertLemsComponentToNeuroML(Component, boolean, Lems) - Static method in class org.neuroml.export.utils.Utils

convertLemsComponentToNeuroMLDocument(Component) - Static method in class org.neuroml.export.utils.Utils

convertLemsToNeuroMLLikeXml(Lems, String) - Static method in class org.neuroml.export.utils.Utils

convertNeuroMLToComponent(Standalone) - Static method in class org.neuroml.export.utils.Utils

convertNeuroMLToSim(Standalone) - Static method in class org.neuroml.export.utils.Utils

convertToNeuronUnits(float, String) - Static method in class org.neuroml.export.neuron.NRNUtils

convertToNeuronUnits(String, Lems) - Static method in class org.neuroml.export.neuron.NRNUtils

convertToNeuronVariable(String[], Component) - Static method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

convertToPng(File) - Method in class org.neuroml.export.svg.SVGWriter

copy() - Method in class org.neuroml.export.svg.Line2D

copyFromJarToTempLocation(String) - Static method in class org.neuroml.export.utils.Utils

COUNTER - org.lemsml.export.vhdl.VHDLWriter.Method

createInfoTree(NeuroMLDocument) - Static method in class org.neuroml.export.info.InfoTreeCreator

createInfoTreeFromComponent(Component) - Static method in class org.neuroml.export.info.InfoTreeCreator

createInfoTreeFromStandalone(Standalone) - Static method in class org.neuroml.export.info.InfoTreeCreator

createPlotNode(String, List<Double>, List<Double>, String, String) - Static method in class org.neuroml.export.info.model.PlotNodeGenerator

createPlotNode(IPlottableExpression, Double, Double, Double, String, String) - Static method in class org.neuroml.export.info.model.PlotNodeGenerator

createPropertiesFromStandaloneComponent(Standalone) - Static method in class org.neuroml.export.info.InfoTreeCreator

cTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

CURVES - org.lemsml.export.dlems.DLemsKeywords

CVisitors - Class in org.lemsml.export.c

CVisitors() - Constructor for class org.lemsml.export.c.CVisitors

CVODE - org.lemsml.export.c.CWriter.Solver

CVODE - org.lemsml.export.dlems.DLemsKeywords

CWriter - Class in org.lemsml.export.c

CWriter(Lems) - Constructor for class org.lemsml.export.c.CWriter

CWriter(Lems, File, String) - Constructor for class org.lemsml.export.c.CWriter

CWriter.Solver - Enum in org.lemsml.export.c

D

Data - Class in org.neuroml.export.info.model

Data(List<Double>, List<Double>, String) - Constructor for class org.neuroml.export.info.model.Data

decreaseIndent(Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

DEFAULT_SEED - Static variable in class org.lemsml.export.dlems.DLemsWriter

DEFAULTPARAMJSON - org.lemsml.export.vhdl.VHDLWriter.Method

DEFAULTPARAMJSON - org.lemsml.export.vhdl.VHDLWriter.ScriptType

DEFAULTREADBACKJSON - org.lemsml.export.vhdl.VHDLWriter.Method

DEFAULTREADBACKJSON - org.lemsml.export.vhdl.VHDLWriter.ScriptType

DEFAULTSTATEJSON - org.lemsml.export.vhdl.VHDLWriter.ScriptType

DELAY - org.lemsml.export.dlems.DLemsKeywords

derivedparameters - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

derivedparameters - Variable in class org.lemsml.export.vhdl.edlems.EDRegime

DerivedVariableProcess - Class in org.lemsml.export.vhdl.writer

DerivedVariableProcess() - Constructor for class org.lemsml.export.vhdl.writer.DerivedVariableProcess

derivedvariables - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

derivedvariables - Variable in class org.lemsml.export.vhdl.edlems.EDRegime

diameter - Variable in class org.neuroml.export.svg.LineND

dimension - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

DIR_64BIT - Static variable in class org.neuroml.export.utils.Utils

DIR_I386 - Static variable in class org.neuroml.export.utils.Utils

DIR_I686 - Static variable in class org.neuroml.export.utils.Utils

DIR_POWERPC - Static variable in class org.neuroml.export.utils.Utils

DIR_UMAC - Static variable in class org.neuroml.export.utils.Utils

direction - Variable in class org.lemsml.export.vhdl.edlems.EDEventPort

DIRECTION - org.lemsml.export.dlems.DLemsKeywords

DISPLAY - org.lemsml.export.dlems.DLemsKeywords

displays - Variable in class org.lemsml.export.vhdl.edlems.EDSimulation

distal - Variable in class org.neuroml.export.svg.Line3D

DLEMS - org.neuroml.export.utils.Format

DLemsKeywords - Enum in org.lemsml.export.dlems

DLemsWriter - Class in org.lemsml.export.dlems

DLemsWriter(Lems) - Constructor for class org.lemsml.export.dlems.DLemsWriter

DLemsWriter(Lems, File, String) - Constructor for class org.lemsml.export.dlems.DLemsWriter

DLemsWriter(Lems, File, String, CommonLangWriter) - Constructor for class org.lemsml.export.dlems.DLemsWriter

DLemsWriter(Lems, File, String, CommonLangWriter, boolean) - Constructor for class org.lemsml.export.dlems.DLemsWriter

DLemsWriter(Lems, CommonLangWriter) - Constructor for class org.lemsml.export.dlems.DLemsWriter

DLemsWriter(Lems, CommonLangWriter, boolean) - Constructor for class org.lemsml.export.dlems.DLemsWriter

DN_SIM - org.neuroml.export.utils.Format

dnsimMainFile - Static variable in class org.neuroml.export.utils.VelocityUtils

dnsimModuleFile - Static variable in class org.neuroml.export.utils.VelocityUtils

DNSimWriter - Class in org.neuroml.export.dnsim

DNSimWriter(Lems) - Constructor for class org.neuroml.export.dnsim.DNSimWriter

DNSimWriter(Lems, File, String) - Constructor for class org.neuroml.export.dnsim.DNSimWriter

dt - Variable in class org.lemsml.export.vhdl.edlems.EDSimulation

DT - org.lemsml.export.dlems.DLemsKeywords

DUMMY_POPULATION_PREFIX - Static variable in class org.neuroml.export.utils.LEMSQuantityPath

DUMP_TO_FILE - org.lemsml.export.dlems.DLemsKeywords

dynamics - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

dynamics - Variable in class org.lemsml.export.vhdl.edlems.EDRegime

Dynamics - Variable in class org.lemsml.export.vhdl.edlems.EDDynamic

DYNAMICS - org.lemsml.export.dlems.DLemsKeywords

E

EDCase - Class in org.lemsml.export.vhdl.edlems

EDCase() - Constructor for class org.lemsml.export.vhdl.edlems.EDCase

EDComponent - Class in org.lemsml.export.vhdl.edlems

EDComponent() - Constructor for class org.lemsml.export.vhdl.edlems.EDComponent

EDCondition - Class in org.lemsml.export.vhdl.edlems

EDCondition() - Constructor for class org.lemsml.export.vhdl.edlems.EDCondition

EDConditionalDerivedVariable - Class in org.lemsml.export.vhdl.edlems

EDConditionalDerivedVariable() - Constructor for class org.lemsml.export.vhdl.edlems.EDConditionalDerivedVariable

EDDerivedParameter - Class in org.lemsml.export.vhdl.edlems

EDDerivedParameter() - Constructor for class org.lemsml.export.vhdl.edlems.EDDerivedParameter

EDDerivedVariable - Class in org.lemsml.export.vhdl.edlems

EDDerivedVariable() - Constructor for class org.lemsml.export.vhdl.edlems.EDDerivedVariable

EDDisplay - Class in org.lemsml.export.vhdl.edlems

EDDisplay() - Constructor for class org.lemsml.export.vhdl.edlems.EDDisplay

EDDynamic - Class in org.lemsml.export.vhdl.edlems

EDDynamic() - Constructor for class org.lemsml.export.vhdl.edlems.EDDynamic

EDEN - org.neuroml.export.utils.Format

edenRunTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

EDENWriter - Class in org.neuroml.export.eden

EDENWriter(Lems, File) - Constructor for class org.neuroml.export.eden.EDENWriter

EDENWriter(Lems, File, File, String) - Constructor for class org.neuroml.export.eden.EDENWriter

EDEvent - Class in org.lemsml.export.vhdl.edlems

EDEvent() - Constructor for class org.lemsml.export.vhdl.edlems.EDEvent

EDEventConnection - Class in org.lemsml.export.vhdl.edlems

EDEventConnection() - Constructor for class org.lemsml.export.vhdl.edlems.EDEventConnection

EDEventConnectionItem - Class in org.lemsml.export.vhdl.edlems

EDEventConnectionItem() - Constructor for class org.lemsml.export.vhdl.edlems.EDEventConnectionItem

EDEventOut - Class in org.lemsml.export.vhdl.edlems

EDEventOut() - Constructor for class org.lemsml.export.vhdl.edlems.EDEventOut

EDEventPort - Class in org.lemsml.export.vhdl.edlems

EDEventPort() - Constructor for class org.lemsml.export.vhdl.edlems.EDEventPort

EDExponential - Class in org.lemsml.export.vhdl.edlems

EDExponential() - Constructor for class org.lemsml.export.vhdl.edlems.EDExponential

EDExposureOLD - Class in org.lemsml.export.vhdl.edlems

EDExposureOLD() - Constructor for class org.lemsml.export.vhdl.edlems.EDExposureOLD

EDLine - Class in org.lemsml.export.vhdl.edlems

EDLine() - Constructor for class org.lemsml.export.vhdl.edlems.EDLine

EDLink - Class in org.lemsml.export.vhdl.edlems

EDLink() - Constructor for class org.lemsml.export.vhdl.edlems.EDLink

EDOnEntry - Class in org.lemsml.export.vhdl.edlems

EDOnEntry() - Constructor for class org.lemsml.export.vhdl.edlems.EDOnEntry

EDParameter - Class in org.lemsml.export.vhdl.edlems

EDParameter() - Constructor for class org.lemsml.export.vhdl.edlems.EDParameter

EDPower - Class in org.lemsml.export.vhdl.edlems

EDPower() - Constructor for class org.lemsml.export.vhdl.edlems.EDPower

EDRegime - Class in org.lemsml.export.vhdl.edlems

EDRegime() - Constructor for class org.lemsml.export.vhdl.edlems.EDRegime

EDRequirement - Class in org.lemsml.export.vhdl.edlems

EDRequirement() - Constructor for class org.lemsml.export.vhdl.edlems.EDRequirement

EDSignal - Class in org.lemsml.export.vhdl.edlems

EDSignal() - Constructor for class org.lemsml.export.vhdl.edlems.EDSignal

EDSignalComplex - Class in org.lemsml.export.vhdl.edlems

EDSignalComplex() - Constructor for class org.lemsml.export.vhdl.edlems.EDSignalComplex

EDSimulation - Class in org.lemsml.export.vhdl.edlems

EDSimulation() - Constructor for class org.lemsml.export.vhdl.edlems.EDSimulation

EDState - Class in org.lemsml.export.vhdl.edlems

EDState() - Constructor for class org.lemsml.export.vhdl.edlems.EDState

EDStateAssignment - Class in org.lemsml.export.vhdl.edlems

EDStateAssignment() - Constructor for class org.lemsml.export.vhdl.edlems.EDStateAssignment

EDStateFunction - Class in org.lemsml.export.vhdl.edlems

EDStateFunction() - Constructor for class org.lemsml.export.vhdl.edlems.EDStateFunction

EDTransition - Class in org.lemsml.export.vhdl.edlems

EDTransition() - Constructor for class org.lemsml.export.vhdl.edlems.EDTransition

EFFECT - org.lemsml.export.dlems.DLemsKeywords

encodeVariablesStyle(String, LemsCollection<FinalParam>, LemsCollection<StateVariable>, LemsCollection<DerivedVariable>, LemsCollection<Requirement>, LemsCollection<Property>, StringBuilder, LemsCollection<FinalParam>, LemsCollection<ParamValue>) - Static method in class org.lemsml.export.vhdl.VHDLEquations

encodeVariablesStyle(String, LemsCollection<FinalParam>, LemsCollection<StateVariable>, LemsCollection<DerivedVariable>, LemsCollection<Requirement>, LemsCollection<Property>, StringBuilder, LemsCollection<FinalParam>, LemsCollection<ParamValue>, boolean) - Static method in class org.lemsml.export.vhdl.VHDLEquations

endElement(StringBuilder, String) - Method in class org.lemsml.export.base.AXMLWriter

endElement(StringBuilder, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

endElement(StringBuilder, String, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

Entity - Class in org.lemsml.export.vhdl.writer

Entity() - Constructor for class org.lemsml.export.vhdl.writer.Entity

eqns - Variable in class org.neuroml.export.base.ANeuroMLBaseWriter.CompInfo

EULER - org.lemsml.export.matlab.MatlabWriter.Method

eval(Double) - Method in class org.neuroml.export.info.model.ChannelMLGenericHHExpression

eval(Double) - Method in class org.neuroml.export.info.model.ChannelMLHHExpression

EVENT_PORT - org.lemsml.export.dlems.DLemsKeywords

EVENT_SELECTION_ID - org.lemsml.export.dlems.DLemsKeywords

EVENT_SELECTIONS - org.lemsml.export.dlems.DLemsKeywords

eventConnections - Variable in class org.lemsml.export.vhdl.edlems.EDSimulation

eventports - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

eventports - Variable in class org.lemsml.export.vhdl.edlems.EDEventConnectionItem

eventports - Variable in class org.lemsml.export.vhdl.edlems.EDLink

events - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

events - Variable in class org.lemsml.export.vhdl.edlems.EDCondition

events - Variable in class org.lemsml.export.vhdl.edlems.EDEvent

events - Variable in class org.lemsml.export.vhdl.edlems.EDOnEntry

events - Variable in class org.lemsml.export.vhdl.edlems.EDRegime

EVENTS - org.lemsml.export.dlems.DLemsKeywords

EXP - org.lemsml.export.vhdl.VHDLWriter.Method

Exponentials - Variable in class org.lemsml.export.vhdl.edlems.EDSignalComplex

EXPORT_LIBRARY_VERSION - org.lemsml.export.dlems.DLemsKeywords

ExportFactory - Class in org.neuroml.export.utils

ExportFactory() - Constructor for class org.neuroml.export.utils.ExportFactory

exposure - Variable in class org.lemsml.export.vhdl.edlems.EDConditionalDerivedVariable

exposure - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

exposure - Variable in class org.lemsml.export.vhdl.edlems.EDState

ExposureIsUsed - Variable in class org.lemsml.export.vhdl.edlems.EDConditionalDerivedVariable

ExposureIsUsed - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

expression - Variable in class org.lemsml.export.vhdl.edlems.EDStateAssignment

ExpressionNode - Class in org.neuroml.export.info.model

ExpressionNode(String) - Constructor for class org.neuroml.export.info.model.ExpressionNode

ExpressionNode(String, String, String, String, Double, Double, Double) - Constructor for class org.neuroml.export.info.model.ExpressionNode

EXT_MORPH_BIOPHYS_CELL_MODEL - org.neuroml.export.utils.support.ModelFeature

extractLemsSimulationXml(Lems, String) - Static method in class org.neuroml.export.utils.Utils

extractLemsSimulationXml(Lems, String, String) - Static method in class org.neuroml.export.utils.Utils

F

FILE_NAME - org.lemsml.export.dlems.DLemsKeywords

findNeuronHome() - Static method in class org.neuroml.export.neuron.ProcessManager

findRectangle(P) - Method in class org.neuroml.export.svg.RectanglePacker

Finds the RectanglePacker.Rectangle where an item is stored

first() - Method in class org.neuroml.export.info.model.pairs.Pair

FIXED_REVERSAL_POTENTIAL - org.neuroml.export.neuron.NeuronWriter.ChannelConductanceOption

format - Variable in class org.lemsml.export.base.ABaseWriter

Format - Enum in org.neuroml.export.utils

formatDefault(float) - Static method in class org.neuroml.export.neuron.NeuronWriter

fraction - Variable in class org.lemsml.export.vhdl.edlems.EDSignal

FRACTION_ALONG - org.lemsml.export.dlems.DLemsKeywords

frontView() - Method in class org.neuroml.export.svg.Network3D

G

generateAllFiles() - Method in class org.neuroml.export.xineml.XineMLWriter

generateAndRun(boolean, boolean) - Method in class org.neuroml.export.pynn.PyNNWriter

generateAndRun(boolean, boolean, boolean) - Method in class org.neuroml.export.neuron.NeuronWriter

generateAndRun(boolean, boolean, boolean, boolean) - Method in class org.neuroml.export.neuron.NeuronWriter

generateAndRun(boolean, boolean, int, boolean) - Method in class org.neuroml.export.netpyne.NetPyNEWriter

generateCellFile(Cell) - Static method in class org.neuroml.export.neuron.NeuronWriter

generateFilesForNeuroMLElements(boolean) - Method in class org.neuroml.export.neuron.NeuronWriter

generateMainScriptAndMods() - Method in class org.neuroml.export.neuron.NeuronWriter

generateModFile(Component) - Method in class org.neuroml.export.neuron.NeuronWriter

generateModFile(Component, NeuronWriter.ChannelConductanceOption) - Method in class org.neuroml.export.neuron.NeuronWriter

GenerationException - Exception in org.neuroml.export.exceptions

GenerationException(String) - Constructor for exception org.neuroml.export.exceptions.GenerationException

GenerationException(String, Throwable) - Constructor for exception org.neuroml.export.exceptions.GenerationException

GEPPETTO - org.neuroml.export.utils.Format

GeppettoWriter - Class in org.neuroml.export.geppetto

GeppettoWriter(Lems, File, String, File) - Constructor for class org.neuroml.export.geppetto.GeppettoWriter

get() - Method in enum org.lemsml.export.dlems.DLemsKeywords

get(String) - Method in class org.neuroml.export.info.model.InfoNode

getAdd() - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

getAllBasedOnCell(NeuroMLDocument) - Method in class org.neuroml.export.svg.SVGWriter

getArchSpecificDir() - Static method in class org.neuroml.export.utils.Utils

getArgEnd() - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

getArgStart() - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

getBitLengthFraction(String) - Static method in class org.lemsml.export.vhdl.VHDLFixedPointDimensions

getBitLengthInteger(String) - Static method in class org.lemsml.export.vhdl.VHDLFixedPointDimensions

getCellFromComponent(Component, Lems) - Static method in class org.neuroml.export.utils.Utils

getCompEqns(ANeuroMLBaseWriter.CompInfo, Component, String, ArrayList<String>, String) - Method in class org.neuroml.export.brian.BrianWriter

getCompTypeInfo(ComponentType) - Method in class org.neuroml.export.graph.GraphWriter

getData() - Method in class org.neuroml.export.info.model.PlotNode

getDerivativeUnit(String) - Static method in class org.neuroml.export.neuron.NRNUtils

getDimension() - Method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

getDimension(String) - Static method in class org.neuroml.export.utils.Utils

getDimensionOfVariableOnCellInPopComp(String[], Component) - Method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

getDimensionString(String) - Method in class org.neuroml.export.graph.GraphWriter

getDiv() - Method in class org.lemsml.export.matlab.MatlabVisitors

getDiv() - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

getExportWriter(Lems, File, String, String) - Static method in class org.neuroml.export.utils.ExportFactory

getExportWriter(Lems, File, String, Format) - Static method in class org.neuroml.export.utils.ExportFactory

getExportWriter(Lems, Format) - Static method in class org.neuroml.export.utils.ExportFactory

getExpression() - Method in class org.neuroml.export.info.model.ChannelMLHHExpression

getExpression() - Method in class org.neuroml.export.info.model.ExpressionNode

getExtension() - Method in enum org.neuroml.export.utils.Format

getFilename() - Method in enum org.lemsml.export.matlab.MatlabWriter.Method

getFilename() - Method in enum org.lemsml.export.vhdl.VHDLWriter.Method

getFinalValue() - Method in class org.neuroml.export.info.model.PlotMetadataNode

getForwardRate() - Method in class org.neuroml.export.info.model.HHRateProcessor

getGates() - Method in class org.neuroml.export.info.model.ChannelInfoExtractor

getHeaderComment(Format) - Static method in class org.neuroml.export.utils.Utils

getHeight() - Method in class org.neuroml.export.svg.RectanglePacker

Gets the height of this packer

getId() - Method in class org.neuroml.export.info.model.ChannelMLGenericHHExpression

getId() - Method in class org.neuroml.export.info.model.ChannelMLHHExpression

getIndent() - Method in class org.lemsml.export.base.AXMLWriter

getIndent(Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

getInitialValue() - Method in class org.neuroml.export.info.model.PlotMetadataNode

getLabel() - Method in class org.neuroml.export.info.model.Data

getLabel() - Method in enum org.neuroml.export.utils.Format

getLimits() - Method in class org.neuroml.export.svg.Network3D

getLinesForSVG(int, int) - Method in class org.neuroml.export.svg.Cell2D

getLog() - Method in class org.neuroml.export.utils.ProcessOutputWatcher

getMagnitudeInSI(String) - Static method in class org.neuroml.export.utils.Utils

getMainScript() - Method in class org.lemsml.export.c.CWriter

getMainScript() - Method in class org.lemsml.export.dlems.DLemsWriter

getMainScript() - Method in class org.lemsml.export.matlab.MatlabWriter

getMainScript() - Method in class org.lemsml.export.sedml.SEDMLWriter

getMainScript() - Method in class org.neuroml.export.brian.BrianWriter

getMainScript() - Method in class org.neuroml.export.cellml.CellMLWriter

getMainScript() - Method in class org.neuroml.export.dnsim.DNSimWriter

getMainScript() - Method in class org.neuroml.export.eden.EDENWriter

getMainScript() - Method in class org.neuroml.export.geppetto.GeppettoWriter

getMainScript() - Method in class org.neuroml.export.graph.GraphWriter

getMainScript() - Method in class org.neuroml.export.info.InfoWriter

getMainScript() - Method in class org.neuroml.export.jneuroml.JNeuroMLWriter

getMainScript() - Method in class org.neuroml.export.moose.MooseWriter

getMainScript() - Method in class org.neuroml.export.nest.NestWriter

getMainScript() - Method in class org.neuroml.export.netpyne.NetPyNEWriter

getMainScript() - Method in class org.neuroml.export.neuron.NeuronWriter

getMainScript() - Method in class org.neuroml.export.pynn.PyNNWriter

getMainScript() - Method in class org.neuroml.export.sbml.SBMLWriter

getMainScript() - Method in class org.neuroml.export.svg.SVGWriter

getMainScript() - Method in class org.neuroml.export.vertex.VertexWriter

getMainScript() - Method in class org.neuroml.export.xineml.XineMLWriter

getMainScript() - Method in class org.neuroml.export.xpp.XppWriter

getMakefile() - Method in class org.lemsml.export.c.CWriter

getMakefile() - Method in enum org.lemsml.export.c.CWriter.Solver

getMaxX(double) - Method in class org.neuroml.export.svg.Line2D

getMaxY(double) - Method in class org.neuroml.export.svg.Line2D

getMechanismName(Component, String) - Static method in class org.neuroml.export.neuron.NRNUtils

getMembraneProperties(Cell) - Method in class org.neuroml.export.neuron.NeuronWriter

getMidpoint() - Method in class org.neuroml.export.info.model.HHRateToIHHExpressionAdapter

getMidpoint() - Method in class org.neuroml.export.info.model.HHTimeToIHHExpressionAdapter

getMidpoint() - Method in class org.neuroml.export.info.model.HHVariableToIHHExpressionAdapter

getMod() - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

getMult() - Method in class org.lemsml.export.matlab.MatlabVisitors

getMult() - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

getNeuronModelScripts(String, boolean) - Method in class org.lemsml.export.vhdl.VHDLWriter

getNeuronModelScripts(String, boolean, boolean) - Method in class org.lemsml.export.vhdl.VHDLWriter

getNeuronUnit(String) - Static method in class org.neuroml.export.neuron.NRNUtils

getNeuronUnitFactor(String) - Static method in class org.neuroml.export.neuron.NRNUtils

getNeuronVariableLabel() - Method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

getNeuronVariableReference() - Method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

getNrnSectionName(Segment) - Method in class org.neuroml.export.neuron.NamingHelper

getOutputFileName() - Method in class org.lemsml.export.base.ABaseWriter

getOutputFolder() - Method in class org.lemsml.export.base.ABaseWriter

getPathforVariableOnSyn() - Method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

getPlotMetadataNode() - Method in class org.neuroml.export.info.model.ExpressionNode

getPlotTitle() - Method in class org.neuroml.export.info.model.PlotMetadataNode

getPopulation() - Method in class org.neuroml.export.utils.LEMSQuantityPath

getPopulationArray() - Method in class org.neuroml.export.utils.LEMSQuantityPath

getPopulationIndex() - Method in class org.neuroml.export.utils.LEMSQuantityPath

getPow() - Method in class org.lemsml.export.matlab.MatlabVisitors

getPow() - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

getPow() - Method in class org.neuroml.export.utils.visitors.PythonVisitors

getPrjFile(Set<String>) - Method in class org.lemsml.export.vhdl.VHDLWriter

getProperties() - Method in class org.neuroml.export.info.model.InfoNode

getQuantity() - Method in class org.neuroml.export.utils.LEMSQuantityPath

getRate() - Method in class org.neuroml.export.info.model.HHRateToIHHExpressionAdapter

getRate() - Method in class org.neuroml.export.info.model.HHTimeToIHHExpressionAdapter

getRate() - Method in class org.neuroml.export.info.model.HHVariableToIHHExpressionAdapter

getRelativeContent(String, String) - Method in class org.neuroml.export.utils.NeuroMLInclusionReader

getReverseRate() - Method in class org.neuroml.export.info.model.HHRateProcessor

getSafeName(String) - Static method in class org.neuroml.export.neuron.NRNUtils

getScale() - Method in class org.neuroml.export.info.model.HHRateToIHHExpressionAdapter

getScale() - Method in class org.neuroml.export.info.model.HHTimeToIHHExpressionAdapter

getScale() - Method in class org.neuroml.export.info.model.HHVariableToIHHExpressionAdapter

getScale() - Method in class org.neuroml.export.utils.LEMSQuantityPath

getSegmentId() - Method in class org.neuroml.export.utils.LEMSQuantityPath

getSimulationScript(VHDLWriter.ScriptType, String, boolean) - Method in class org.lemsml.export.vhdl.VHDLWriter

getSimulationScript(VHDLWriter.ScriptType, Map<String, Float>, String, boolean) - Method in class org.lemsml.export.vhdl.VHDLWriter

getSIUnitInNeuroML(Dimension) - Static method in class org.neuroml.export.utils.Utils

getSolver() - Method in class org.lemsml.export.c.CWriter

getStateVarName(String) - Static method in class org.neuroml.export.neuron.NRNUtils

getSteadyState() - Method in class org.neuroml.export.info.model.HHTauInfProcessor

getStepValue() - Method in class org.neuroml.export.info.model.PlotMetadataNode

getSub() - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

getSupportedOutputs() - Static method in class org.neuroml.export.utils.SupportedFormats

getSupportedOutputs(Lems) - Static method in class org.neuroml.export.utils.SupportedFormats

getSupportLevelInfo() - Static method in class org.neuroml.export.utils.support.SupportLevelInfo

getSynapseIndex() - Method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

getSynapseType() - Method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

getTCLScript(double, double) - Method in class org.lemsml.export.vhdl.VHDLWriter

getTemplate() - Method in enum org.lemsml.export.c.CWriter.Solver

getTemplateAsReader(String) - Static method in class org.neuroml.export.utils.VelocityUtils

getThreshold(Component, Lems) - Static method in class org.neuroml.export.neuron.NRNUtils

getTimeCourse() - Method in class org.neuroml.export.info.model.HHTauInfProcessor

getType() - Method in class org.neuroml.export.info.model.HHRateToIHHExpressionAdapter

getType() - Method in class org.neuroml.export.info.model.HHTimeToIHHExpressionAdapter

getType() - Method in class org.neuroml.export.info.model.HHVariableToIHHExpressionAdapter

getValAndUnit(double, String) - Method in class org.neuroml.export.graph.GraphWriter

getVariable() - Method in class org.neuroml.export.utils.LEMSQuantityPath

getVariable(String[], LEMSQuantityPath.Type) - Static method in class org.neuroml.export.utils.LEMSQuantityPath

getVariableOnSyn() - Method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

getVariableParts() - Method in class org.neuroml.export.utils.LEMSQuantityPath

getVariablePartsAsString(String[]) - Static method in class org.neuroml.export.utils.LEMSQuantityPath

getVariablePartsAsString(String, String[]) - Static method in class org.neuroml.export.utils.LEMSQuantityPath

getVariablePathInPopComp() - Method in class org.neuroml.export.utils.LEMSQuantityPath

getVariablePathInPopComp(String[], LEMSQuantityPath.Type) - Static method in class org.neuroml.export.utils.LEMSQuantityPath

getVelocityEngine() - Static method in class org.neuroml.export.utils.VelocityUtils

getVLLFile(Set<String>) - Method in class org.lemsml.export.vhdl.VHDLWriter

getWidth() - Method in class org.neuroml.export.svg.RectanglePacker

Gets the width of this packer

getXAxisLabel() - Method in class org.neuroml.export.info.model.PlotMetadataNode

getXData() - Method in class org.neuroml.export.info.model.Data

getYAxisLabel() - Method in class org.neuroml.export.info.model.PlotMetadataNode

getYData() - Method in class org.neuroml.export.info.model.Data

GLOBAL_TIME_CELLML - Static variable in class org.neuroml.export.cellml.CellMLWriter

GLOBAL_TIME_SBML - Static variable in class org.lemsml.export.sedml.SEDMLWriter

GLOBAL_TIME_SBML - Static variable in class org.neuroml.export.sbml.SBMLWriter

GLOBAL_TIME_SBML_MATHML - Static variable in class org.lemsml.export.sedml.SEDMLWriter

GLOBAL_TIME_SBML_MATHML - Static variable in class org.neuroml.export.sbml.SBMLWriter

GRAPH_VIZ - org.neuroml.export.utils.Format

GraphWriter - Class in org.neuroml.export.graph

GraphWriter(Lems) - Constructor for class org.neuroml.export.graph.GraphWriter

GraphWriter(Lems, File, String) - Constructor for class org.neuroml.export.graph.GraphWriter

H

hasBoundingBox() - Method in class org.neuroml.export.svg.Cell2D

hasNext() - Method in class org.neuroml.export.info.model.pairs.ParallelIterator

height - Variable in class org.neuroml.export.svg.RectanglePacker.Rectangle

height() - Method in class org.neuroml.export.svg.Cell2D

HH_CHANNEL_MODEL - org.neuroml.export.utils.support.ModelFeature

HHRateProcessor - Class in org.neuroml.export.info.model

HHRateProcessor(GateHHRates) - Constructor for class org.neuroml.export.info.model.HHRateProcessor

HHRateProcessor(GateHHUndetermined) - Constructor for class org.neuroml.export.info.model.HHRateProcessor

HHRateToIHHExpressionAdapter - Class in org.neuroml.export.info.model

HHRateToIHHExpressionAdapter(HHRate) - Constructor for class org.neuroml.export.info.model.HHRateToIHHExpressionAdapter

HHTauInfProcessor - Class in org.neuroml.export.info.model

HHTauInfProcessor(GateHHTauInf) - Constructor for class org.neuroml.export.info.model.HHTauInfProcessor

HHTauInfProcessor(GateHHUndetermined) - Constructor for class org.neuroml.export.info.model.HHTauInfProcessor

HHTimeToIHHExpressionAdapter - Class in org.neuroml.export.info.model

HHTimeToIHHExpressionAdapter(HHTime) - Constructor for class org.neuroml.export.info.model.HHTimeToIHHExpressionAdapter

HHVariableToIHHExpressionAdapter - Class in org.neuroml.export.info.model

HHVariableToIHHExpressionAdapter(HHVariable) - Constructor for class org.neuroml.export.info.model.HHVariableToIHHExpressionAdapter

HIGH - org.neuroml.export.utils.support.SupportLevelInfo.Level

I

IBaseWriter - Interface in org.lemsml.export.base

id - Variable in class org.lemsml.export.vhdl.edlems.EDLine

id - Variable in class org.neuroml.export.svg.LineND

increaseIndent(Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

INDENT - Static variable in class org.lemsml.export.base.AXMLWriter

INDENT - Static variable in class org.neuroml.export.base.ANeuroMLXMLWriter

INDENT - Static variable in class org.neuroml.export.info.model.InfoNode

inequalityToCondition(String) - Static method in class org.lemsml.export.vhdl.VHDLEquations

InfoNode - Class in org.neuroml.export.info.model

InfoNode() - Constructor for class org.neuroml.export.info.model.InfoNode

INFORMATION - org.neuroml.export.utils.Format

InfoTreeCreator - Class in org.neuroml.export.info

InfoTreeCreator() - Constructor for class org.neuroml.export.info.InfoTreeCreator

InfoWriter - Class in org.neuroml.export.info

InfoWriter(NeuroMLDocument) - Constructor for class org.neuroml.export.info.InfoWriter

initializeVelocity() - Static method in class org.neuroml.export.utils.VelocityUtils

initInfo - Variable in class org.neuroml.export.base.ANeuroMLBaseWriter.CompInfo

INPUT_DEFINITION_SUFFIX - Variable in class org.neuroml.export.netpyne.NetPyNEWriter

INPUT_DEFINITION_SUFFIX - Variable in class org.neuroml.export.pynn.PyNNWriter

inputBusPosition - Variable in class org.lemsml.export.vhdl.edlems.EDSignal

INPUTS - org.lemsml.export.dlems.DLemsKeywords

insert(int, int, P) - Method in class org.neuroml.export.svg.RectanglePacker

Attempts to pack an item of the supplied dimensions

insertIncludes(String) - Method in class org.neuroml.export.utils.NeuroMLInclusionReader

inspectRectangles(List<RectanglePacker.Rectangle>) - Method in class org.neuroml.export.svg.RectanglePacker

Builds a list of all RectanglePacker.Rectangles in the tree, for debugging purposes

integer - Variable in class org.lemsml.export.vhdl.edlems.EDSignal

is64bitPlatform() - Static method in class org.neuroml.export.utils.Utils

isDefault - Variable in class org.lemsml.export.vhdl.edlems.EDRegime

isEmpty - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

isEmpty() - Method in class org.neuroml.export.info.model.InfoNode

isInteger(String) - Static method in class org.neuroml.export.utils.LEMSQuantityPath

isLinuxBasedPlatform() - Static method in class org.neuroml.export.utils.Utils

isMacBasedPlatform() - Static method in class org.neuroml.export.utils.Utils

isNoGui() - Method in class org.neuroml.export.eden.EDENWriter

isNoGui() - Method in class org.neuroml.export.moose.MooseWriter

isNoGui() - Method in class org.neuroml.export.netpyne.NetPyNEWriter

isNoGui() - Method in class org.neuroml.export.neuron.NeuronWriter

isPlottingSavingSynVariables(Component, boolean) - Static method in class org.neuroml.export.neuron.NRNUtils

isSupported() - Method in enum org.neuroml.export.utils.support.SupportLevelInfo.Level

isSupported(Format, ModelFeature) - Method in class org.neuroml.export.utils.support.SupportLevelInfo

isSynapse - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

isSynapseSelect - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

IsUsedForOtherDerivedVariables - Variable in class org.lemsml.export.vhdl.edlems.EDConditionalDerivedVariable

IsUsedForOtherDerivedVariables - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

isVariableInPopulation() - Method in class org.neuroml.export.utils.LEMSQuantityPath

isVariableOnSynapse() - Method in class org.neuroml.export.utils.LEMSQuantityPath

isVersionControlDir(File) - Static method in class org.neuroml.export.utils.Utils

isVersionControlDir(String) - Static method in class org.neuroml.export.utils.Utils

isWindowsBasedPlatform() - Static method in class org.neuroml.export.utils.Utils

items - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

itemsParents - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

IterablePair<T1,T2> - Class in org.neuroml.export.info.model.pairs

IterablePair(List<T1>, List<T2>) - Constructor for class org.neuroml.export.info.model.pairs.IterablePair

iterator() - Method in class org.neuroml.export.info.model.pairs.IterablePair

J

JNEUROML - org.neuroml.export.utils.Format

JNeuroMLWriter - Class in org.neuroml.export.jneuroml

JNeuroMLWriter(Lems) - Constructor for class org.neuroml.export.jneuroml.JNeuroMLWriter

JNeuroMLWriter(Lems, File, String) - Constructor for class org.neuroml.export.jneuroml.JNeuroMLWriter

JSONCellSerializer - Class in org.neuroml.export.neuron

JSONCellSerializer() - Constructor for class org.neuroml.export.neuron.JSONCellSerializer

K

keywordSubstitutions - Variable in class org.neuroml.export.xpp.XppWriter

KS_CHANNEL_MODEL - org.neuroml.export.utils.support.ModelFeature

L

lems - Variable in class org.lemsml.export.base.ABaseWriter

LEMS - org.neuroml.export.utils.Format

LEMS_EXAMPLES_RESOURCES_DIR - Static variable in class org.neuroml.export.utils.Utils

LEMSQuantityPath - Class in org.neuroml.export.utils

LEMSQuantityPath(String) - Constructor for class org.neuroml.export.utils.LEMSQuantityPath

LEMSQuantityPath(String, String) - Constructor for class org.neuroml.export.utils.LEMSQuantityPath

LEMSQuantityPath.Type - Enum in org.neuroml.export.utils

LEMSQuantityPathNeuron - Class in org.neuroml.export.neuron

LEMSQuantityPathNeuron(String, String, Component, HashMap<String, String>, ArrayList<Component>, HashMap<String, Cell>, HashMap<String, String>, Lems) - Constructor for class org.neuroml.export.neuron.LEMSQuantityPathNeuron

LEMSQuantityPathNeuron(String, String, Lems) - Constructor for class org.neuroml.export.neuron.LEMSQuantityPathNeuron

lengthFactor - Variable in enum org.neuroml.export.neuron.NeuronWriter.SupportedUnits

Line2D - Class in org.neuroml.export.svg

Line2D() - Constructor for class org.neuroml.export.svg.Line2D

Line3D - Class in org.neuroml.export.svg

Line3D() - Constructor for class org.neuroml.export.svg.Line3D

LineND - Class in org.neuroml.export.svg

LineND() - Constructor for class org.neuroml.export.svg.LineND

lines - Variable in class org.lemsml.export.vhdl.edlems.EDDisplay

lines - Variable in class org.neuroml.export.svg.Cell2D

lines - Variable in class org.neuroml.export.svg.Network3D

links - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

loadLemsFile(File, boolean, boolean) - Static method in class org.neuroml.export.utils.Utils

LOCAL_CELLML_SCHEMA - Static variable in class org.neuroml.export.cellml.CellMLWriter

LOW - org.neuroml.export.utils.support.SupportLevelInfo.Level

M

main(String[]) - Static method in class org.lemsml.export.dlems.DLemsWriter

main(String[]) - Static method in class org.lemsml.export.sedml.SEDMLWriter

main(String[]) - Static method in class org.neuroml.export.brian.BrianWriter

main(String[]) - Static method in class org.neuroml.export.cellml.CellMLWriter

main(String[]) - Static method in class org.neuroml.export.eden.EDENWriter

main(String[]) - Static method in class org.neuroml.export.geppetto.GeppettoWriter

main(String[]) - Static method in class org.neuroml.export.graph.GraphWriter

main(String[]) - Static method in class org.neuroml.export.info.InfoWriter

FIXME: Why a main method?

main(String[]) - Static method in class org.neuroml.export.jneuroml.JNeuroMLWriter

main(String[]) - Static method in class org.neuroml.export.moose.MooseWriter

main(String[]) - Static method in class org.neuroml.export.nest.NestWriter

main(String[]) - Static method in class org.neuroml.export.netpyne.NetPyNEWriter

main(String[]) - Static method in class org.neuroml.export.neuron.JSONCellSerializer

main(String[]) - Static method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

main(String[]) - Static method in class org.neuroml.export.neuron.NeuronWriter

main(String[]) - Static method in class org.neuroml.export.neuron.NRNUtils

main(String[]) - Static method in class org.neuroml.export.neuron.ProcessManager

main(String[]) - Static method in class org.neuroml.export.pynn.PyNNWriter

main(String[]) - Static method in class org.neuroml.export.sbml.SBMLWriter

main(String[]) - Static method in class org.neuroml.export.svg.SVGWriter

main(String[]) - Static method in class org.neuroml.export.utils.LEMSQuantityPath

main(String[]) - Static method in enum org.neuroml.export.utils.support.ModelFeature

main(String[]) - Static method in class org.neuroml.export.utils.support.SupportLevelInfo

main(String[]) - Static method in class org.neuroml.export.utils.Utils

main(String[]) - Static method in class org.neuroml.export.vertex.VertexWriter

main(String[]) - Static method in class org.neuroml.export.xineml.XineMLWriter

makeFile - Static variable in class org.neuroml.export.utils.VelocityUtils

MATLAB - org.neuroml.export.utils.Format

matlabEulerFile - Static variable in class org.neuroml.export.utils.VelocityUtils

matlabOdeFile - Static variable in class org.neuroml.export.utils.VelocityUtils

MatlabVisitors - Class in org.lemsml.export.matlab

MatlabVisitors() - Constructor for class org.lemsml.export.matlab.MatlabVisitors

MatlabWriter - Class in org.lemsml.export.matlab

MatlabWriter(Lems) - Constructor for class org.lemsml.export.matlab.MatlabWriter

MatlabWriter(Lems, File, String) - Constructor for class org.lemsml.export.matlab.MatlabWriter

MatlabWriter.Method - Enum in org.lemsml.export.matlab

Matrix3D - Class in org.neuroml.export.svg

MAX - org.lemsml.export.dlems.DLemsKeywords

MEDIUM - org.neuroml.export.utils.support.SupportLevelInfo.Level

MetadataWriter - Class in org.lemsml.export.vhdl.metadata

MetadataWriter() - Constructor for class org.lemsml.export.vhdl.metadata.MetadataWriter

MIN - org.lemsml.export.dlems.DLemsKeywords

ModelFeature - Enum in org.neuroml.export.utils.support

ModelFeatureSupportException - Exception in org.neuroml.export.exceptions

ModelFeatureSupportException(String) - Constructor for exception org.neuroml.export.exceptions.ModelFeatureSupportException

MODELICA - org.neuroml.export.utils.Format

modelicaClassTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

modelicaRunTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

ModelicaWriter - Class in org.lemsml.export.modelica

ModelicaWriter(Lems) - Constructor for class org.lemsml.export.modelica.ModelicaWriter

ModelicaWriter(Lems, File, String) - Constructor for class org.lemsml.export.modelica.ModelicaWriter

modWarnings - Variable in class org.neuroml.export.neuron.NeuronWriter

modWritten - Variable in class org.neuroml.export.neuron.NeuronWriter

MOOSE - org.neuroml.export.utils.Format

mooseRunTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

MooseWriter - Class in org.neuroml.export.moose

MooseWriter(Lems) - Constructor for class org.neuroml.export.moose.MooseWriter

MooseWriter(Lems, File, String) - Constructor for class org.neuroml.export.moose.MooseWriter

MULTI_CELL_MODEL - org.neuroml.export.utils.support.ModelFeature

MULTI_POPULATION_MODEL - org.neuroml.export.utils.support.ModelFeature

MULTICOMPARTMENTAL_CELL_MODEL - org.neuroml.export.utils.support.ModelFeature

MUX - org.lemsml.export.vhdl.VHDLWriter.Method

myType - Variable in class org.neuroml.export.utils.LEMSQuantityPath

N

name - Variable in class org.lemsml.export.vhdl.edlems.EDCase

name - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

name - Variable in class org.lemsml.export.vhdl.edlems.EDCondition

name - Variable in class org.lemsml.export.vhdl.edlems.EDConditionalDerivedVariable

name - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedParameter

name - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

name - Variable in class org.lemsml.export.vhdl.edlems.EDDisplay

name - Variable in class org.lemsml.export.vhdl.edlems.EDDynamic

name - Variable in class org.lemsml.export.vhdl.edlems.EDEvent

name - Variable in class org.lemsml.export.vhdl.edlems.EDEventConnection

name - Variable in class org.lemsml.export.vhdl.edlems.EDEventConnectionItem

name - Variable in class org.lemsml.export.vhdl.edlems.EDEventOut

name - Variable in class org.lemsml.export.vhdl.edlems.EDEventPort

name - Variable in class org.lemsml.export.vhdl.edlems.EDExponential

name - Variable in class org.lemsml.export.vhdl.edlems.EDExposureOLD

name - Variable in class org.lemsml.export.vhdl.edlems.EDLink

name - Variable in class org.lemsml.export.vhdl.edlems.EDOnEntry

name - Variable in class org.lemsml.export.vhdl.edlems.EDParameter

name - Variable in class org.lemsml.export.vhdl.edlems.EDPower

name - Variable in class org.lemsml.export.vhdl.edlems.EDRegime

name - Variable in class org.lemsml.export.vhdl.edlems.EDRequirement

name - Variable in class org.lemsml.export.vhdl.edlems.EDState

name - Variable in class org.lemsml.export.vhdl.edlems.EDStateAssignment

name - Variable in class org.lemsml.export.vhdl.edlems.EDStateFunction

name - Variable in class org.lemsml.export.vhdl.edlems.EDTransition

NAME - org.lemsml.export.dlems.DLemsKeywords

NAMESPACE_9ML - Static variable in class org.neuroml.export.xineml.XineMLWriter

NAMESPACE_SPINEML_COMP_LAYER - Static variable in class org.neuroml.export.xineml.XineMLWriter

NAMESPACE_SPINEML_EXP_LAYER - Static variable in class org.neuroml.export.xineml.XineMLWriter

NAMESPACE_SPINEML_NET_LAYER - Static variable in class org.neuroml.export.xineml.XineMLWriter

NamingHelper - Class in org.neuroml.export.neuron

NamingHelper(Cell) - Constructor for class org.neuroml.export.neuron.NamingHelper

NEST - org.neuroml.export.utils.Format

nestCellTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

nestRunTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

NestWriter - Class in org.neuroml.export.nest

NestWriter(Lems) - Constructor for class org.neuroml.export.nest.NestWriter

NestWriter(Lems, File, String) - Constructor for class org.neuroml.export.nest.NestWriter

NETPYNE - org.neuroml.export.utils.Format

netpyneCellTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

netpyneInputNeuronTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

netpyneRunTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

NetPyNEWriter - Class in org.neuroml.export.netpyne

NetPyNEWriter(Lems) - Constructor for class org.neuroml.export.netpyne.NetPyNEWriter

NetPyNEWriter(Lems, File, String) - Constructor for class org.neuroml.export.netpyne.NetPyNEWriter

NETWORK_MODEL - org.neuroml.export.utils.support.ModelFeature

NETWORK_WITH_ANALOG_CONNS_MODEL - org.neuroml.export.utils.support.ModelFeature

NETWORK_WITH_GAP_JUNCTIONS_MODEL - org.neuroml.export.utils.support.ModelFeature

NETWORK_WITH_INPUTS_MODEL - org.neuroml.export.utils.support.ModelFeature

NETWORK_WITH_PROJECTIONS_MODEL - org.neuroml.export.utils.support.ModelFeature

Network3D - Class in org.neuroml.export.svg

Network3D(String) - Constructor for class org.neuroml.export.svg.Network3D

Network3D(Cell) - Constructor for class org.neuroml.export.svg.Network3D

NEUROML_COMPTYPR_RESOURCES_DIR - Static variable in class org.neuroml.export.utils.Utils

NEUROML_EXAMPLES_RESOURCES_DIR - Static variable in class org.neuroml.export.utils.Utils

NEUROML2 - org.neuroml.export.utils.Format

NeuroMLInclusionReader - Class in org.neuroml.export.utils

NeuroMLInclusionReader(File) - Constructor for class org.neuroml.export.utils.NeuroMLInclusionReader

NeuroMLInclusionReader(String) - Constructor for class org.neuroml.export.utils.NeuroMLInclusionReader

NEURON - org.neuroml.export.neuron.NeuronWriter.SupportedUnits

NEURON - org.neuroml.export.utils.Format

NEURON_A - org.neuroml.export.utils.Format

NEURON_FRACT_ALONG - org.lemsml.export.dlems.DLemsKeywords

NEURON_HOME_ENV_VAR - Static variable in class org.neuroml.export.neuron.NeuronWriter

NEURON_MECHANISM_NAME - org.lemsml.export.dlems.DLemsKeywords

NEURON_SECTION_NAME - org.lemsml.export.dlems.DLemsKeywords

NEURON_VARIABLE_NAME - org.lemsml.export.dlems.DLemsKeywords

NEURON_VARIABLE_SCALE - org.lemsml.export.dlems.DLemsKeywords

neuronCellTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

neuronComponents - Variable in class org.lemsml.export.vhdl.edlems.EDSimulation

NEURONCORE_CONFIG - org.lemsml.export.vhdl.VHDLWriter.ScriptType

NEURONCORE_TOP - org.lemsml.export.vhdl.VHDLWriter.ScriptType

NeuronCoreTop - Class in org.lemsml.export.vhdl.writer

NeuronCoreTop() - Constructor for class org.lemsml.export.vhdl.writer.NeuronCoreTop

neuronInstances - Variable in class org.lemsml.export.vhdl.edlems.EDSimulation

NeuronWriter - Class in org.neuroml.export.neuron

NeuronWriter(Lems) - Constructor for class org.neuroml.export.neuron.NeuronWriter

NeuronWriter(Lems, File, String) - Constructor for class org.neuroml.export.neuron.NeuronWriter

NeuronWriter.ChannelConductanceOption - Enum in org.neuroml.export.neuron

NeuronWriter.CompInfo - Class in org.neuroml.export.neuron

NeuronWriter.SupportedUnits - Enum in org.neuroml.export.neuron

next() - Method in class org.neuroml.export.info.model.pairs.ParallelIterator

NINEML - org.neuroml.export.utils.Format

nmlDocument - Variable in class org.neuroml.export.base.ANeuroMLBaseWriter

NONE - org.neuroml.export.utils.support.SupportLevelInfo.Level

NRNUtils - Class in org.neuroml.export.neuron

NRNUtils() - Constructor for class org.neuroml.export.neuron.NRNUtils

O

ODE - org.lemsml.export.matlab.MatlabWriter.Method

onEntrys - Variable in class org.lemsml.export.vhdl.edlems.EDRegime

onstart - Variable in class org.lemsml.export.vhdl.edlems.EDState

optimiseDerivedVariables(EDComponent, ComponentType) - Static method in class org.lemsml.export.vhdl.VHDLDynamics

ORDINATE - org.lemsml.export.dlems.DLemsKeywords

ORDINATE_AXIS - org.lemsml.export.dlems.DLemsKeywords

ORG_NEUROML_EXPORT_VERSION - Static variable in class org.neuroml.export.utils.Utils

org.lemsml.export.base - package org.lemsml.export.base

org.lemsml.export.c - package org.lemsml.export.c

org.lemsml.export.dlems - package org.lemsml.export.dlems

org.lemsml.export.matlab - package org.lemsml.export.matlab

org.lemsml.export.modelica - package org.lemsml.export.modelica

org.lemsml.export.sedml - package org.lemsml.export.sedml

org.lemsml.export.vhdl - package org.lemsml.export.vhdl

org.lemsml.export.vhdl.edlems - package org.lemsml.export.vhdl.edlems

org.lemsml.export.vhdl.metadata - package org.lemsml.export.vhdl.metadata

org.lemsml.export.vhdl.writer - package org.lemsml.export.vhdl.writer

org.neuroml.export.base - package org.neuroml.export.base

org.neuroml.export.brian - package org.neuroml.export.brian

org.neuroml.export.cellml - package org.neuroml.export.cellml

org.neuroml.export.dnsim - package org.neuroml.export.dnsim

org.neuroml.export.eden - package org.neuroml.export.eden

org.neuroml.export.exceptions - package org.neuroml.export.exceptions

org.neuroml.export.geppetto - package org.neuroml.export.geppetto

org.neuroml.export.graph - package org.neuroml.export.graph

org.neuroml.export.info - package org.neuroml.export.info

org.neuroml.export.info.model - package org.neuroml.export.info.model

org.neuroml.export.info.model.pairs - package org.neuroml.export.info.model.pairs

org.neuroml.export.jneuroml - package org.neuroml.export.jneuroml

org.neuroml.export.moose - package org.neuroml.export.moose

org.neuroml.export.nest - package org.neuroml.export.nest

org.neuroml.export.netpyne - package org.neuroml.export.netpyne

org.neuroml.export.neuron - package org.neuroml.export.neuron

org.neuroml.export.pynn - package org.neuroml.export.pynn

org.neuroml.export.sbml - package org.neuroml.export.sbml

org.neuroml.export.svg - package org.neuroml.export.svg

org.neuroml.export.utils - package org.neuroml.export.utils

org.neuroml.export.utils.support - package org.neuroml.export.utils.support

org.neuroml.export.utils.visitors - package org.neuroml.export.utils.visitors

org.neuroml.export.vertex - package org.neuroml.export.vertex

org.neuroml.export.xineml - package org.neuroml.export.xineml

org.neuroml.export.xpp - package org.neuroml.export.xpp

Orientation - Enum in org.neuroml.export.svg

OUTPUT_COLUMNS - org.lemsml.export.dlems.DLemsKeywords

OUTPUT_FILE - org.lemsml.export.dlems.DLemsKeywords

outputBusPosition - Variable in class org.lemsml.export.vhdl.edlems.EDSignal

OUTSIDE_CURRENT_SCOPE - org.neuroml.export.utils.support.SupportLevelInfo.Level

P

Pair<T1,T2> - Class in org.neuroml.export.info.model.pairs

ParallelIterator<T1,T2> - Class in org.neuroml.export.info.model.pairs

ParallelIterator(Iterator<T1>, Iterator<T2>) - Constructor for class org.neuroml.export.info.model.pairs.ParallelIterator

parameters - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

PARAMETERS - org.lemsml.export.dlems.DLemsKeywords

params - Variable in class org.neuroml.export.base.ANeuroMLBaseWriter.CompInfo

parseCellRefStringForCellNum(String) - Static method in class org.neuroml.export.utils.Utils

parseCellRefStringForPopulation(String) - Static method in class org.neuroml.export.utils.Utils

permeabilityFactor - Variable in enum org.neuroml.export.neuron.NeuronWriter.SupportedUnits

perspectiveView(double, double) - Method in class org.neuroml.export.svg.Network3D

PHYSIOLOGICAL - org.neuroml.export.neuron.NeuronWriter.SupportedUnits

PlotMetadataNode - Class in org.neuroml.export.info.model

PlotMetadataNode(String, String, String) - Constructor for class org.neuroml.export.info.model.PlotMetadataNode

PlotMetadataNode(String, String, String, Double, Double, Double) - Constructor for class org.neuroml.export.info.model.PlotMetadataNode

PlotNode - Class in org.neuroml.export.info.model

PlotNode(String, String, String) - Constructor for class org.neuroml.export.info.model.PlotNode

PlotNode(String, String, String, Double, Double, Double) - Constructor for class org.neuroml.export.info.model.PlotNode

PlotNodeGenerator - Class in org.neuroml.export.info.model

PlotNodeGenerator() - Constructor for class org.neuroml.export.info.model.PlotNodeGenerator

PNG - org.neuroml.export.utils.Format

population - Variable in class org.neuroml.export.utils.LEMSQuantityPath

POPULATION - org.lemsml.export.dlems.DLemsKeywords

POPULATION_INDEX - org.lemsml.export.dlems.DLemsKeywords

populationIndex - Variable in class org.neuroml.export.utils.LEMSQuantityPath

POPULATIONS - org.lemsml.export.dlems.DLemsKeywords

POST_CELL_ID - org.lemsml.export.dlems.DLemsKeywords

POST_POPULATION - org.lemsml.export.dlems.DLemsKeywords

POW - org.lemsml.export.vhdl.VHDLWriter.Method

Powers - Variable in class org.lemsml.export.vhdl.edlems.EDSignalComplex

PRE_CELL_ID - org.lemsml.export.dlems.DLemsKeywords

PRE_POPULATION - org.lemsml.export.dlems.DLemsKeywords

PREF_CELLML_SCHEMA - Static variable in class org.neuroml.export.cellml.CellMLWriter

PREF_CELLML_VERSION - Static variable in class org.neuroml.export.cellml.CellMLWriter

PREF_SBML_SCHEMA - Static variable in class org.neuroml.export.sbml.SBMLWriter

PREF_SEDML_SCHEMA - Static variable in class org.lemsml.export.sedml.SEDMLWriter

processAttr(String) - Method in class org.lemsml.export.base.AXMLWriter

processAttr(String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

ProcessManager - Class in org.neuroml.export.neuron

ProcessManager() - Constructor for class org.neuroml.export.neuron.ProcessManager

processMathML(StringBuilder, DoubleEvaluator) - Method in class org.lemsml.export.base.AXMLWriter

processMathML(StringBuilder, DoubleEvaluator) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

processMathML(StringBuilder, ParseTree) - Method in class org.lemsml.export.base.AXMLWriter

processMathML(StringBuilder, ParseTree) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

processMathML(StringBuilder, ParseTree, boolean) - Method in class org.lemsml.export.base.AXMLWriter

processMathML(StringBuilder, ParseTree, boolean) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

ProcessOutputWatcher - Class in org.neuroml.export.utils

ProcessOutputWatcher(InputStream, String) - Constructor for class org.neuroml.export.utils.ProcessOutputWatcher

PROJECTIONS - org.lemsml.export.dlems.DLemsKeywords

proximal - Variable in class org.neuroml.export.svg.Line3D

put(String, Object) - Method in class org.neuroml.export.info.model.InfoNode

putAll(Map<String, Object>) - Method in class org.neuroml.export.info.model.InfoNode

putIntoVelocityContext(String, VelocityContext) - Static method in class org.lemsml.export.dlems.DLemsWriter

PYNN - org.neuroml.export.utils.Format

pynnAbstractCellTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

pynnInputNeuronTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

pynnMorphCellTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

pynnRunTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

PyNNWriter - Class in org.neuroml.export.pynn

PyNNWriter(Lems) - Constructor for class org.neuroml.export.pynn.PyNNWriter

PyNNWriter(Lems, File, String) - Constructor for class org.neuroml.export.pynn.PyNNWriter

PythonVisitors - Class in org.neuroml.export.utils.visitors

PythonVisitors() - Constructor for class org.neuroml.export.utils.visitors.PythonVisitors

Q

quantity - Variable in class org.lemsml.export.vhdl.edlems.EDLine

QUANTITY - org.lemsml.export.dlems.DLemsKeywords

R

readLemsNeuroMLFile(File) - Static method in class org.neuroml.export.utils.Utils

readLemsNeuroMLFile(File, boolean) - Static method in class org.neuroml.export.utils.Utils

readLemsNeuroMLFile(String) - Static method in class org.neuroml.export.utils.Utils

readNeuroMLFile(File) - Static method in class org.neuroml.export.utils.Utils

readNeuroMLFile(File, boolean) - Static method in class org.neuroml.export.utils.Utils

readNeuroMLFile(String) - Static method in class org.neuroml.export.utils.Utils

Rectangle(int, int, int, int) - Constructor for class org.neuroml.export.svg.RectanglePacker.Rectangle

RectanglePacker<P> - Class in org.neuroml.export.svg

Tries to pack rectangles as tightly as possible.

RectanglePacker(int, int, int) - Constructor for class org.neuroml.export.svg.RectanglePacker

Builds a new RectanglePacker

RectanglePacker.Rectangle - Class in org.neuroml.export.svg

Yet another Rectangle class.

regimes - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

RegimeStateMachine - Class in org.lemsml.export.vhdl.writer

RegimeStateMachine() - Constructor for class org.lemsml.export.vhdl.writer.RegimeStateMachine

REL_TOL - org.lemsml.export.dlems.DLemsKeywords

remove() - Method in class org.neuroml.export.info.model.pairs.ParallelIterator

remove(P) - Method in class org.neuroml.export.svg.RectanglePacker

Removes an item from the tree, consolidating the space if possible.

removeAllAxesIndicators() - Method in class org.neuroml.export.svg.Network3D

removeAllFiles(File, boolean, boolean) - Static method in class org.neuroml.export.utils.Utils

render(StringBuilder, boolean) - Method in class org.neuroml.export.svg.SVGWriter

reorderAlphabetically(AbstractList, boolean) - Static method in class org.neuroml.export.utils.Utils

replaceInExpression(String, String, String) - Static method in class org.neuroml.export.utils.Utils

REPORT_FILE - org.lemsml.export.dlems.DLemsKeywords

requirements - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

resistivityFactor - Variable in enum org.neuroml.export.neuron.NeuronWriter.SupportedUnits

run() - Method in class org.neuroml.export.utils.ProcessOutputWatcher

runLemsFile(File, boolean) - Static method in class org.neuroml.export.utils.Utils

S

saveModToFile(Component, String) - Method in class org.neuroml.export.neuron.NeuronWriter

sb - Variable in class org.neuroml.export.utils.visitors.CommonLangWriter

SBML - org.neuroml.export.utils.Format

SBMLWriter - Class in org.neuroml.export.sbml

SBMLWriter(Lems) - Constructor for class org.neuroml.export.sbml.SBMLWriter

SBMLWriter(Lems, File, String) - Constructor for class org.neuroml.export.sbml.SBMLWriter

scale - Variable in class org.lemsml.export.vhdl.edlems.EDLine

scale - Variable in class org.neuroml.export.utils.LEMSQuantityPath

SCHEMA_9ML - Static variable in class org.neuroml.export.xineml.XineMLWriter

SCHEMA_SPINEML_COMP_LAYER - Static variable in class org.neuroml.export.xineml.XineMLWriter

SCHEMA_SPINEML_EXP_LAYER - Static variable in class org.neuroml.export.xineml.XineMLWriter

SCHEMA_SPINEML_NET_LAYER - Static variable in class org.neuroml.export.xineml.XineMLWriter

second() - Method in class org.neuroml.export.info.model.pairs.Pair

SEDML - org.neuroml.export.utils.Format

SEDML_LEVEL - Static variable in class org.lemsml.export.sedml.SEDMLWriter

SEDML_VERSION - Static variable in class org.lemsml.export.sedml.SEDMLWriter

SEDMLWriter - Class in org.lemsml.export.sedml

SEDMLWriter(Lems) - Constructor for class org.lemsml.export.sedml.SEDMLWriter

SEDMLWriter(Lems, File, String, String) - Constructor for class org.lemsml.export.sedml.SEDMLWriter

SEDMLWriter(Lems, File, String, String, Format) - Constructor for class org.lemsml.export.sedml.SEDMLWriter

SEED - org.lemsml.export.dlems.DLemsKeywords

SEGMENT_ID - org.lemsml.export.dlems.DLemsKeywords

SEGMENT_NAME - org.lemsml.export.dlems.DLemsKeywords

segmentId - Variable in class org.neuroml.export.utils.LEMSQuantityPath

select - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedParameter

SELECT - org.lemsml.export.dlems.DLemsKeywords

sensitivityList - Variable in class org.lemsml.export.vhdl.edlems.EDCondition

sensitivityList - Variable in class org.lemsml.export.vhdl.edlems.EDConditionalDerivedVariable

sensitivityList - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedParameter

sensitivityList - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

sensitivityList - Variable in class org.lemsml.export.vhdl.edlems.EDDynamic

sensitivityList - Variable in class org.lemsml.export.vhdl.edlems.EDState

sensitivityList - Variable in class org.lemsml.export.vhdl.edlems.EDStateAssignment

serialize(ParseTree) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

setAdd(String) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

setArgEnd(String) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

setArgStart(String) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

setBrian2(boolean) - Method in class org.neuroml.export.brian.BrianWriter

setDiv(String) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

setExpression(String) - Method in class org.neuroml.export.info.model.ExpressionNode

setExpression(IPlottableExpression) - Method in class org.neuroml.export.info.model.ChannelMLHHExpression

setFlattenSynapses(boolean) - Method in class org.lemsml.export.dlems.DLemsWriter

setForwardRate(ChannelMLHHExpression) - Method in class org.neuroml.export.info.model.HHRateProcessor

setGenerateAlphabetical(boolean) - Method in class org.neuroml.export.neuron.NeuronWriter

setIncludeConnectionsFromHDF5(boolean) - Method in class org.neuroml.export.utils.NeuroMLInclusionReader

setMetadataPlotNode(PlotMetadataNode) - Method in class org.neuroml.export.info.model.ExpressionNode

setMethod(MatlabWriter.Method) - Method in class org.lemsml.export.matlab.MatlabWriter

setMod(String) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

setMult(String) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

setNeuronMode(boolean) - Method in class org.lemsml.export.dlems.DLemsWriter

setNoGui(boolean) - Method in class org.neuroml.export.eden.EDENWriter

setNoGui(boolean) - Method in class org.neuroml.export.moose.MooseWriter

setNoGui(boolean) - Method in class org.neuroml.export.netpyne.NetPyNEWriter

setNoGui(boolean) - Method in class org.neuroml.export.neuron.NeuronWriter

setOnlyFlattenIfNecessary(boolean) - Method in class org.lemsml.export.dlems.DLemsWriter

setOutputFileName(String) - Method in class org.lemsml.export.base.ABaseWriter

setOutputFileName(String) - Method in interface org.lemsml.export.base.IBaseWriter

setOutputFolder(File) - Method in class org.lemsml.export.base.ABaseWriter

setOutputFolder(File) - Method in interface org.lemsml.export.base.IBaseWriter

setOutputFolder(File) - Method in class org.neuroml.export.eden.EDENWriter

setOutputFolder(File) - Method in class org.neuroml.export.moose.MooseWriter

setOutputFolder(File) - Method in class org.neuroml.export.netpyne.NetPyNEWriter

setOutputFolder(File) - Method in class org.neuroml.export.pynn.PyNNWriter

setParallelMode(boolean) - Method in class org.neuroml.export.neuron.NeuronWriter

setPopulation(String) - Method in class org.neuroml.export.utils.LEMSQuantityPath

setPopulationMode(boolean) - Method in class org.lemsml.export.dlems.DLemsWriter

setPow(String) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

setRegenerateNeuroMLNet(boolean) - Method in class org.neuroml.export.netpyne.NetPyNEWriter

setReverseRate(ChannelMLHHExpression) - Method in class org.neuroml.export.info.model.HHRateProcessor

setSolver(CWriter.Solver) - Method in class org.lemsml.export.c.CWriter

setSub(String) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

setSupportedFeatures() - Method in interface org.lemsml.export.base.IBaseWriter

setSupportedFeatures() - Method in class org.lemsml.export.c.CWriter

setSupportedFeatures() - Method in class org.lemsml.export.dlems.DLemsWriter

setSupportedFeatures() - Method in class org.lemsml.export.matlab.MatlabWriter

setSupportedFeatures() - Method in class org.lemsml.export.modelica.ModelicaWriter

setSupportedFeatures() - Method in class org.lemsml.export.sedml.SEDMLWriter

setSupportedFeatures() - Method in class org.lemsml.export.vhdl.VHDLWriter

setSupportedFeatures() - Method in class org.neuroml.export.brian.BrianWriter

setSupportedFeatures() - Method in class org.neuroml.export.cellml.CellMLWriter

setSupportedFeatures() - Method in class org.neuroml.export.dnsim.DNSimWriter

setSupportedFeatures() - Method in class org.neuroml.export.eden.EDENWriter

setSupportedFeatures() - Method in class org.neuroml.export.geppetto.GeppettoWriter

setSupportedFeatures() - Method in class org.neuroml.export.graph.GraphWriter

setSupportedFeatures() - Method in class org.neuroml.export.info.InfoWriter

setSupportedFeatures() - Method in class org.neuroml.export.jneuroml.JNeuroMLWriter

setSupportedFeatures() - Method in class org.neuroml.export.moose.MooseWriter

setSupportedFeatures() - Method in class org.neuroml.export.nest.NestWriter

setSupportedFeatures() - Method in class org.neuroml.export.netpyne.NetPyNEWriter

setSupportedFeatures() - Method in class org.neuroml.export.neuron.NeuronWriter

setSupportedFeatures() - Method in class org.neuroml.export.pynn.PyNNWriter

setSupportedFeatures() - Method in class org.neuroml.export.sbml.SBMLWriter

setSupportedFeatures() - Method in class org.neuroml.export.svg.SVGWriter

setSupportedFeatures() - Method in class org.neuroml.export.vertex.VertexWriter

setSupportedFeatures() - Method in class org.neuroml.export.xineml.XineMLWriter

setSupportedFeatures() - Method in class org.neuroml.export.xpp.XppWriter

setTimeCourse(ChannelMLHHExpression) - Method in class org.neuroml.export.info.model.HHTauInfProcessor

setUnitConverter(UnitConverter) - Method in class org.lemsml.export.dlems.DLemsWriter

SI - org.neuroml.export.neuron.NeuronWriter.SupportedUnits

sideView() - Method in class org.neuroml.export.svg.Network3D

SIELEGANS_IMETA - org.lemsml.export.vhdl.VHDLWriter.ScriptType

SIELEGANS_INITMETA - org.lemsml.export.vhdl.VHDLWriter.ScriptType

SIELEGANS_TOP - org.lemsml.export.vhdl.VHDLWriter.Method

SIELEGANS_TOP - org.lemsml.export.vhdl.VHDLWriter.ScriptType

SiElegansTop - Class in org.lemsml.export.vhdl.writer

SiElegansTop() - Constructor for class org.lemsml.export.vhdl.writer.SiElegansTop

simlength - Variable in class org.lemsml.export.vhdl.edlems.EDSimulation

SINGLE_COMP_MODEL - org.neuroml.export.utils.support.ModelFeature

SIUnitConverter - Class in org.lemsml.export.dlems

SIUnitConverter() - Constructor for class org.lemsml.export.dlems.SIUnitConverter

SIZE - org.lemsml.export.dlems.DLemsKeywords

sli - Static variable in class org.lemsml.export.base.ABaseWriter

source - Variable in class org.lemsml.export.vhdl.edlems.EDEventConnection

specCapFactor - Variable in enum org.neuroml.export.neuron.NeuronWriter.SupportedUnits

SPIKE_FILE - org.lemsml.export.dlems.DLemsKeywords

SPIKE_FILE_FORMAT - org.lemsml.export.dlems.DLemsKeywords

SPINEML - org.neuroml.export.utils.Format

startElement(StringBuilder, String) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String[]) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String[]) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String[], boolean) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String[], boolean, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String[], Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, boolean) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String, boolean, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, String, boolean) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String, String, boolean, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, String, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, String, String, boolean) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String, String, String, boolean, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, String, String, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, String, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String, String, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, String, String, String, boolean) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String, String, String, String, boolean) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, String, String, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String, String, String, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startElement(StringBuilder, String, String, String, String, String, String, boolean) - Method in class org.lemsml.export.base.AXMLWriter

startElement(StringBuilder, String, String, String, String, String, String, boolean) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndElement(StringBuilder, String) - Method in class org.lemsml.export.base.AXMLWriter

startEndElement(StringBuilder, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndElement(StringBuilder, String, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndElement(StringBuilder, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startEndElement(StringBuilder, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndElement(StringBuilder, String, String[]) - Method in class org.lemsml.export.base.AXMLWriter

startEndElement(StringBuilder, String, String[]) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndElement(StringBuilder, String, String[], Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndElement(StringBuilder, String, String, Integer) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndElement(StringBuilder, String, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startEndElement(StringBuilder, String, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndElement(StringBuilder, String, String, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startEndElement(StringBuilder, String, String, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndElement(StringBuilder, String, String, String, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startEndElement(StringBuilder, String, String, String, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndElement(StringBuilder, String, String, String, String, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startEndElement(StringBuilder, String, String, String, String, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

startEndTextElement(StringBuilder, String, String) - Method in class org.lemsml.export.base.AXMLWriter

startEndTextElement(StringBuilder, String, String) - Method in class org.neuroml.export.base.ANeuroMLXMLWriter

state - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

STATE - org.lemsml.export.dlems.DLemsKeywords

state_functions - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

STATE_FUNCTIONS - org.lemsml.export.dlems.DLemsKeywords

stateAssignment - Variable in class org.lemsml.export.vhdl.edlems.EDCondition

stateAssignment - Variable in class org.lemsml.export.vhdl.edlems.EDOnEntry

stateAssignments - Variable in class org.lemsml.export.vhdl.edlems.EDEvent

StatevariableProcess - Class in org.lemsml.export.vhdl.writer

StatevariableProcess() - Constructor for class org.lemsml.export.vhdl.writer.StatevariableProcess

stateVars - Variable in class org.neuroml.export.base.ANeuroMLBaseWriter.CompInfo

steps - Variable in class org.lemsml.export.vhdl.edlems.EDSimulation

SUPPORTED - Static variable in class org.neuroml.export.utils.support.SupportLevelInfo

SupportedFormats - Class in org.neuroml.export.utils

SupportedFormats() - Constructor for class org.neuroml.export.utils.SupportedFormats

SupportLevelInfo - Class in org.neuroml.export.utils.support

SupportLevelInfo.Level - Enum in org.neuroml.export.utils.support

SVG - org.neuroml.export.utils.Format

SVGWriter - Class in org.neuroml.export.svg

SVGWriter(NeuroMLDocument, File, String) - Constructor for class org.neuroml.export.svg.SVGWriter

SYNAPSE - org.lemsml.export.dlems.DLemsKeywords

synapseCount - Variable in class org.lemsml.export.vhdl.edlems.EDSimulation

SYNAPSES - org.lemsml.export.dlems.DLemsKeywords

SYNTH_TOP - org.lemsml.export.vhdl.VHDLWriter.Method

SYNTH_TOP - org.lemsml.export.vhdl.VHDLWriter.ScriptType

sysEnvInfo(String) - Static method in class org.neuroml.export.utils.Utils

T

t_end - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

T_END - org.lemsml.export.dlems.DLemsKeywords

t_start - Variable in class org.lemsml.export.vhdl.edlems.EDComponent

T_START - org.lemsml.export.dlems.DLemsKeywords

target - Variable in class org.lemsml.export.vhdl.edlems.EDEventConnection

TEMPERATURE - org.lemsml.export.dlems.DLemsKeywords

Testbench - Class in org.lemsml.export.vhdl.writer

Testbench() - Constructor for class org.lemsml.export.vhdl.writer.Testbench

TESTBENCH - org.lemsml.export.vhdl.VHDLWriter.Method

TESTBENCH - org.lemsml.export.vhdl.VHDLWriter.ScriptType

timeScale - Variable in class org.lemsml.export.vhdl.edlems.EDDisplay

timeScale - Variable in class org.lemsml.export.vhdl.edlems.EDLine

TITLE - org.lemsml.export.dlems.DLemsKeywords

toDetailString(String) - Method in class org.neuroml.export.info.model.InfoNode

TopSynth - Class in org.lemsml.export.vhdl.writer

TopSynth() - Constructor for class org.lemsml.export.vhdl.writer.TopSynth

topView() - Method in class org.neuroml.export.svg.Network3D

toShortString() - Method in class org.neuroml.export.info.model.PlotMetadataNode

toShortString() - Method in class org.neuroml.export.info.model.PlotNode

toString() - Method in class org.neuroml.export.info.model.ChannelMLGenericHHExpression

toString() - Method in class org.neuroml.export.info.model.ChannelMLHHExpression

toString() - Method in class org.neuroml.export.info.model.Data

toString() - Method in class org.neuroml.export.info.model.ExpressionNode

toString() - Method in class org.neuroml.export.info.model.InfoNode

toString() - Method in class org.neuroml.export.info.model.PlotMetadataNode

toString() - Method in class org.neuroml.export.info.model.PlotNode

toString() - Method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

toString() - Method in class org.neuroml.export.svg.RectanglePacker.Rectangle

toString() - Method in enum org.neuroml.export.utils.Format

toString() - Method in class org.neuroml.export.utils.LEMSQuantityPath

toString() - Method in enum org.neuroml.export.utils.support.ModelFeature

toString() - Method in class org.neuroml.export.utils.support.SupportLevelInfo

toTreeString(String) - Method in class org.neuroml.export.info.model.InfoNode

transitions - Variable in class org.lemsml.export.vhdl.edlems.EDCondition

transitions - Variable in class org.lemsml.export.vhdl.edlems.EDEvent

transitions - Variable in class org.lemsml.export.vhdl.edlems.EDOnEntry

type - Variable in class org.lemsml.export.vhdl.edlems.EDConditionalDerivedVariable

type - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedParameter

type - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

type - Variable in class org.lemsml.export.vhdl.edlems.EDExposureOLD

type - Variable in class org.lemsml.export.vhdl.edlems.EDParameter

type - Variable in class org.lemsml.export.vhdl.edlems.EDRequirement

type - Variable in class org.lemsml.export.vhdl.edlems.EDState

TYPE - org.lemsml.export.dlems.DLemsKeywords

U

UnitConverter - Interface in org.lemsml.export.dlems

UNKNOWN - org.neuroml.export.utils.LEMSQuantityPath.Type

USE_GHK - org.neuroml.export.neuron.NeuronWriter.ChannelConductanceOption

USE_GHK2 - org.neuroml.export.neuron.NeuronWriter.ChannelConductanceOption

USE_NERNST - org.neuroml.export.neuron.NeuronWriter.ChannelConductanceOption

useColor - Variable in class org.neuroml.export.svg.SVGWriter

Utils - Class in org.neuroml.export.utils

Utils() - Constructor for class org.neuroml.export.utils.Utils

V

valid() - Method in class org.neuroml.export.neuron.LEMSQuantityPathNeuron

value - Variable in class org.lemsml.export.vhdl.edlems.EDCase

value - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedParameter

value - Variable in class org.lemsml.export.vhdl.edlems.EDDerivedVariable

value - Variable in class org.lemsml.export.vhdl.edlems.EDExponential

value - Variable in class org.lemsml.export.vhdl.edlems.EDParameter

value - Variable in class org.lemsml.export.vhdl.edlems.EDStateFunction

valueA - Variable in class org.lemsml.export.vhdl.edlems.EDPower

valueOf(String) - Static method in enum org.lemsml.export.c.CWriter.Solver

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.lemsml.export.dlems.DLemsKeywords

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.lemsml.export.matlab.MatlabWriter.Method

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.lemsml.export.vhdl.VHDLWriter.Method

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.lemsml.export.vhdl.VHDLWriter.ScriptType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml.export.neuron.NeuronWriter.ChannelConductanceOption

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml.export.neuron.NeuronWriter.SupportedUnits

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml.export.svg.Orientation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml.export.utils.Format

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml.export.utils.LEMSQuantityPath.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml.export.utils.support.ModelFeature

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.neuroml.export.utils.support.SupportLevelInfo.Level

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.lemsml.export.c.CWriter.Solver

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.lemsml.export.dlems.DLemsKeywords

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.lemsml.export.matlab.MatlabWriter.Method

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.lemsml.export.vhdl.VHDLWriter.Method

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.lemsml.export.vhdl.VHDLWriter.ScriptType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml.export.neuron.NeuronWriter.ChannelConductanceOption

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml.export.neuron.NeuronWriter.SupportedUnits

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml.export.svg.Orientation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml.export.utils.Format

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml.export.utils.LEMSQuantityPath.Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml.export.utils.support.ModelFeature

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.neuroml.export.utils.support.SupportLevelInfo.Level

Returns an array containing the constants of this enum type, in the order they are declared.

valueX - Variable in class org.lemsml.export.vhdl.edlems.EDPower

VAR_IN_CELL_IN_POP - org.neuroml.export.utils.LEMSQuantityPath.Type

VAR_IN_CELL_IN_POP_LIST - org.neuroml.export.utils.LEMSQuantityPath.Type

VAR_IN_SINGLE_COMP - org.neuroml.export.utils.LEMSQuantityPath.Type

VAR_ON_SEG_IN_CELL_IN_POP_LIST - org.neuroml.export.utils.LEMSQuantityPath.Type

VARIABLE - org.lemsml.export.dlems.DLemsKeywords

variableParts - Variable in class org.neuroml.export.utils.LEMSQuantityPath

VelocityUtils - Class in org.neuroml.export.utils

VelocityUtils() - Constructor for class org.neuroml.export.utils.VelocityUtils

VERTEX - org.neuroml.export.utils.Format

vertexCellTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

vertexRunTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

vertexSynapseTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

VertexWriter - Class in org.neuroml.export.vertex

VertexWriter(Lems, File, String) - Constructor for class org.neuroml.export.vertex.VertexWriter

VHDL - org.neuroml.export.utils.Format

VHDLDynamics - Class in org.lemsml.export.vhdl

VHDLDynamics() - Constructor for class org.lemsml.export.vhdl.VHDLDynamics

VHDLEquations - Class in org.lemsml.export.vhdl

VHDLEquations() - Constructor for class org.lemsml.export.vhdl.VHDLEquations

VHDLFixedPointDimensions - Class in org.lemsml.export.vhdl

VHDLFixedPointDimensions() - Constructor for class org.lemsml.export.vhdl.VHDLFixedPointDimensions

VHDLParameters - Class in org.lemsml.export.vhdl

VHDLParameters() - Constructor for class org.lemsml.export.vhdl.VHDLParameters

VHDLUtilComparator - Class in org.lemsml.export.vhdl

VHDLUtilComparator(String) - Constructor for class org.lemsml.export.vhdl.VHDLUtilComparator

VHDLWriter - Class in org.lemsml.export.vhdl

VHDLWriter(Lems) - Constructor for class org.lemsml.export.vhdl.VHDLWriter

VHDLWriter.Method - Enum in org.lemsml.export.vhdl

VHDLWriter.ScriptType - Enum in org.lemsml.export.vhdl

visitAndNode(BooleanParseTreeNode, BooleanParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitConstant(double) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitDivideNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitEqualsNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitFunctionNode(String, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitGreaterThanNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitGreaterThanOrEqualsNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitLessThanNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitLessThanOrEqualsNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitMinusNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitModuloNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitNotEqualsNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitOp(String, DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitOrNode(OrNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitPlusNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitPowerNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.lemsml.export.c.CVisitors

visitPowerNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitTimesNode(DoubleParseTreeNode, DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitUnaryMinusNode(DoubleParseTreeNode) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

visitVariable(String) - Method in class org.neuroml.export.utils.visitors.CommonLangWriter

voltageFactor - Variable in enum org.neuroml.export.neuron.NeuronWriter.SupportedUnits

W

WEIGHT - org.lemsml.export.dlems.DLemsKeywords

width - Variable in class org.neuroml.export.svg.RectanglePacker.Rectangle

width() - Method in class org.neuroml.export.svg.Cell2D

writeBitLengths(EDSignal, String) - Static method in class org.lemsml.export.vhdl.VHDLFixedPointDimensions

writeConditionList(ComponentType, String, StringBuilder, LemsCollection<FinalParam>, LemsCollection<ParamValue>) - Static method in class org.lemsml.export.vhdl.VHDLDynamics

writeConditions(ComponentType, LemsCollection<OnCondition>, LemsCollection<FinalParam>, LemsCollection<ParamValue>) - Static method in class org.lemsml.export.vhdl.VHDLDynamics

writeConnectivityMap(EDComponent, StringBuilder, String, String) - Static method in class org.lemsml.export.vhdl.writer.SiElegansTop

writeConnectivityMapPar(EDComponent, StringBuilder, String, String, JsonGenerator) - Static method in class org.lemsml.export.vhdl.writer.NeuronCoreTop

writeConnectivityMapVar(EDComponent, StringBuilder, String, String, JsonGenerator) - Static method in class org.lemsml.export.vhdl.writer.NeuronCoreTop

writeConstraintsFile(EDSimulation, StringBuilder) - Static method in class org.lemsml.export.vhdl.writer.Constraints

writeDerivedParameters(ComponentType, LemsCollection<DerivedParameter>, LemsCollection<FinalParam>, LemsCollection<ParamValue>) - Static method in class org.lemsml.export.vhdl.VHDLParameters

writeDerivedVariables(EDComponent, ComponentType, LemsCollection<DerivedVariable>, Component, LemsCollection<FinalParam>, LemsCollection<ParamValue>, Lems) - Static method in class org.lemsml.export.vhdl.VHDLDynamics

writeEDComponent(EDComponent, StringBuilder, boolean, boolean, boolean, String) - Static method in class org.lemsml.export.vhdl.writer.Entity

writeEntitySignals(EDComponent, StringBuilder, String, boolean) - Static method in class org.lemsml.export.vhdl.writer.Entity

writeEntitySignals(EDComponent, StringBuilder, String, String) - Static method in class org.lemsml.export.vhdl.writer.TopSynth

writeEntitySignals(EDComponent, StringBuilder, String, String, boolean) - Static method in class org.lemsml.export.vhdl.writer.Entity

writeEntrys(ComponentType, LemsCollection<OnEntry>, LemsCollection<FinalParam>, LemsCollection<ParamValue>) - Static method in class org.lemsml.export.vhdl.VHDLDynamics

writeEvents(ComponentType, LemsCollection<OnEvent>, LemsCollection<FinalParam>, LemsCollection<ParamValue>) - Static method in class org.lemsml.export.vhdl.VHDLDynamics

writeInternalExpLnLogEvaluators(String, EDSignalComplex, String, StringBuilder, String) - Static method in class org.lemsml.export.vhdl.VHDLEquations

writeJSONDefaultParameters(EDSimulation, StringBuilder, String) - Static method in class org.lemsml.export.vhdl.metadata.MetadataWriter

writeJSONDefaultReadback(EDSimulation, StringBuilder, String) - Static method in class org.lemsml.export.vhdl.metadata.MetadataWriter

writeJSONDefaultState(EDSimulation, StringBuilder, Map<String, Float>, String) - Static method in class org.lemsml.export.vhdl.metadata.MetadataWriter

writeModBlock(StringBuilder, String, String) - Static method in class org.neuroml.export.neuron.NeuronWriter

writeNeuronCoreTop(EDSimulation, StringBuilder, JsonGenerator, Map<String, Float>, String) - Static method in class org.lemsml.export.vhdl.writer.NeuronCoreTop

writeParameters(Component, LemsCollection<FinalParam>, LemsCollection<ParamValue>) - Static method in class org.lemsml.export.vhdl.VHDLParameters

writeRegimes(EDComponent, Component, boolean, LemsCollection<FinalParam>, LemsCollection<ParamValue>, Lems) - Static method in class org.lemsml.export.vhdl.VHDLDynamics

writeSignal(String, int, int, int, int, JsonGenerator) - Static method in class org.lemsml.export.vhdl.writer.NeuronCoreTop

writeSiIMeta(EDSimulation, StringBuilder, String) - Static method in class org.lemsml.export.vhdl.metadata.MetadataWriter

writeSiInitMeta(EDSimulation, StringBuilder, String, float, Map<String, Float>) - Static method in class org.lemsml.export.vhdl.metadata.MetadataWriter

writeState(EDComponent, Component, LemsCollection<FinalParam>, LemsCollection<ParamValue>) - Static method in class org.lemsml.export.vhdl.VHDLDynamics

writeStateFunctions(EDComponent, Component) - Static method in class org.lemsml.export.vhdl.VHDLDynamics

writeStateSignals(EDComponent, StringBuilder, String, String) - Static method in class org.lemsml.export.vhdl.writer.NeuronCoreTop

writeStateSignals(EDComponent, StringBuilder, String, String) - Static method in class org.lemsml.export.vhdl.writer.SiElegansTop

writeStateSignals(EDComponent, StringBuilder, String, String) - Static method in class org.lemsml.export.vhdl.writer.Testbench

writeStateSignals(EDComponent, StringBuilder, String, String) - Static method in class org.lemsml.export.vhdl.writer.TopSynth

writeStateToBusSignals(EDComponent, StringBuilder, String, String) - Static method in class org.lemsml.export.vhdl.writer.SiElegansTop

writeStateToBusSignals(EDComponent, StringBuilder, String, String, JsonGenerator) - Static method in class org.lemsml.export.vhdl.writer.NeuronCoreTop

writeTestBench(EDSimulation, StringBuilder, Map<String, Float>, boolean) - Static method in class org.lemsml.export.vhdl.writer.Testbench

writeTimeDerivatives(ComponentType, LemsCollection<TimeDerivative>, LemsCollection<FinalParam>, LemsCollection<ParamValue>, String) - Static method in class org.lemsml.export.vhdl.VHDLDynamics

writeTop(EDSimulation, StringBuilder) - Static method in class org.lemsml.export.vhdl.writer.SiElegansTop

writeTop(EDSimulation, StringBuilder, String, boolean) - Static method in class org.lemsml.export.vhdl.writer.TopSynth

X

x - Variable in class org.neuroml.export.svg.RectanglePacker.Rectangle

x1 - Variable in class org.neuroml.export.svg.Line2D

x2 - Variable in class org.neuroml.export.svg.Line2D

XINEML - org.neuroml.export.utils.Format

XineMLWriter - Class in org.neuroml.export.xineml

XineMLWriter(Lems, Format) - Constructor for class org.neuroml.export.xineml.XineMLWriter

XineMLWriter(Lems, Format, File, String) - Constructor for class org.neuroml.export.xineml.XineMLWriter

xmax - Variable in class org.lemsml.export.vhdl.edlems.EDDisplay

xMax - Variable in class org.neuroml.export.svg.Cell2D

xmin - Variable in class org.lemsml.export.vhdl.edlems.EDDisplay

xMin - Variable in class org.neuroml.export.svg.Cell2D

XPP - org.neuroml.export.utils.Format

xppTemplateFile - Static variable in class org.neuroml.export.utils.VelocityUtils

XppWriter - Class in org.neuroml.export.xpp

XppWriter(Lems) - Constructor for class org.neuroml.export.xpp.XppWriter

XppWriter(Lems, File, String) - Constructor for class org.neuroml.export.xpp.XppWriter

xy - org.neuroml.export.svg.Orientation

xz - org.neuroml.export.svg.Orientation

Y

y - Variable in class org.neuroml.export.svg.RectanglePacker.Rectangle

y1 - Variable in class org.neuroml.export.svg.Line2D

y2 - Variable in class org.neuroml.export.svg.Line2D

yMax - Variable in class org.neuroml.export.svg.Cell2D

yMin - Variable in class org.neuroml.export.svg.Cell2D

yz - org.neuroml.export.svg.Orientation

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