Package org.neuroml.export.neuron

Class LEMSQuantityPathNeuron

java.lang.Object

org.neuroml.export.utils.LEMSQuantityPath

org.neuroml.export.neuron.LEMSQuantityPathNeuron

public class LEMSQuantityPathNeuron
extends LEMSQuantityPath

Author:

Padraig Gleeson

Nested Class Summary

Nested classes/interfaces inherited from class org.neuroml.export.utils.LEMSQuantityPath

LEMSQuantityPath.Type

Field Summary

Fields inherited from class org.neuroml.export.utils.LEMSQuantityPath

DUMMY_POPULATION_PREFIX, myType, population, populationIndex, scale, segmentId, variableParts

Constructor Summary

Constructors

Constructor	Description
LEMSQuantityPathNeuron(String q, String s, org.lemsml.jlems.core.type.Component targetComp, HashMap<String,String> compMechNamesHoc, ArrayList<org.lemsml.jlems.core.type.Component> popsOrComponents, HashMap<String,org.neuroml.model.Cell> compIdsVsCells, HashMap<String,String> hocRefsVsInputs, org.lemsml.jlems.core.type.Lems lems)
LEMSQuantityPathNeuron(String q, String s, org.lemsml.jlems.core.type.Lems lems)

Method Summary

Modifier and Type	Method	Description
static String	convertToNeuronVariable(String[] variableParts, org.lemsml.jlems.core.type.Component popComp)
org.lemsml.jlems.core.type.Dimension	getDimension()
org.lemsml.jlems.core.type.Dimension	getDimensionOfVariableOnCellInPopComp(String[] variableParts, org.lemsml.jlems.core.type.Component popComp)
String	getNeuronVariableLabel()
String	getNeuronVariableReference()
String	getPathforVariableOnSyn()
int	getSynapseIndex()
String	getSynapseType()
String	getVariableOnSyn()
static void	main(String[] args)
String	toString()
boolean	valid()

Methods inherited from class org.neuroml.export.utils.LEMSQuantityPath

getPopulation, getPopulationArray, getPopulationIndex, getQuantity, getScale, getSegmentId, getVariable, getVariable, getVariableParts, getVariablePartsAsString, getVariablePartsAsString, getVariablePathInPopComp, getVariablePathInPopComp, isInteger, isVariableInPopulation, isVariableOnSynapse, setPopulation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

LEMSQuantityPathNeuron

public LEMSQuantityPathNeuron(String q,
                              String s,
                              org.lemsml.jlems.core.type.Component targetComp,
                              HashMap<String,String> compMechNamesHoc,
                              ArrayList<org.lemsml.jlems.core.type.Component> popsOrComponents,
                              HashMap<String,org.neuroml.model.Cell> compIdsVsCells,
                              HashMap<String,String> hocRefsVsInputs,
                              org.lemsml.jlems.core.type.Lems lems)
                       throws org.lemsml.jlems.core.sim.ContentError

Throws:

org.lemsml.jlems.core.sim.ContentError

LEMSQuantityPathNeuron

public LEMSQuantityPathNeuron(String q,
                              String s,
                              org.lemsml.jlems.core.type.Lems lems)
                       throws org.lemsml.jlems.core.sim.ContentError

Throws:

org.lemsml.jlems.core.sim.ContentError

Method Detail

getDimensionOfVariableOnCellInPopComp

public org.lemsml.jlems.core.type.Dimension getDimensionOfVariableOnCellInPopComp(String[] variableParts,
                                                                                  org.lemsml.jlems.core.type.Component popComp)
                                                                           throws org.lemsml.jlems.core.sim.ContentError

Throws:

org.lemsml.jlems.core.sim.ContentError

getDimension

public org.lemsml.jlems.core.type.Dimension getDimension()
                                                  throws org.lemsml.jlems.core.sim.ContentError,
                                                         org.neuroml.model.util.NeuroMLException

Throws:

org.lemsml.jlems.core.sim.ContentError

org.neuroml.model.util.NeuroMLException

getNeuronVariableLabel

public String getNeuronVariableLabel()
                              throws org.lemsml.jlems.core.sim.ContentError

Throws:

org.lemsml.jlems.core.sim.ContentError

convertToNeuronVariable

public static String convertToNeuronVariable(String[] variableParts,
                                             org.lemsml.jlems.core.type.Component popComp)
                                      throws org.lemsml.jlems.core.sim.ContentError

Throws:

org.lemsml.jlems.core.sim.ContentError

getSynapseType

public String getSynapseType()

getSynapseIndex

public int getSynapseIndex()

getVariableOnSyn

public String getVariableOnSyn()

getPathforVariableOnSyn

public String getPathforVariableOnSyn()

valid

public boolean valid()

getNeuronVariableReference

public String getNeuronVariableReference()
                                  throws org.lemsml.jlems.core.sim.ContentError,
                                         org.neuroml.model.util.NeuroMLException

Throws:

org.lemsml.jlems.core.sim.ContentError

org.neuroml.model.util.NeuroMLException

toString

public String toString()

Overrides:

toString in class LEMSQuantityPath

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception