Package org.neuroml.export.neuron

Class NRNUtils

java.lang.Object

org.neuroml.export.neuron.NRNUtils

All Implemented Interfaces:

UnitConverter

public class NRNUtils
extends Object
implements UnitConverter

Author:

Boris Marin, Padraig Gleeson

Constructor Summary

Constructors

Constructor	Description
NRNUtils()

Method Summary

Modifier and Type	Method	Description
protected static String	checkCommentLineLength(String comment)
protected static String	checkForBinaryOperators(String expr)
protected static String	checkForStateVarsAndNested(String expr, org.lemsml.jlems.core.type.Component comp, LinkedHashMap<String,LinkedHashMap<String,String>> paramMappings)
float	convert(float siValue, String dimensionName)
protected static float	convertToNeuronUnits(float siVal, String dimensionName)
protected static float	convertToNeuronUnits(String neuromlQuantity, org.lemsml.jlems.core.type.Lems lems)
protected static String	getDerivativeUnit(String dimensionName)
static String	getMechanismName(org.lemsml.jlems.core.type.Component comp, String popName)
protected static String	getNeuronUnit(String dimensionName)
static float	getNeuronUnitFactor(String dimensionName)
static String	getSafeName(String id)
protected static String	getStateVarName(String sv)
protected static float	getThreshold(org.lemsml.jlems.core.type.Component comp, org.lemsml.jlems.core.type.Lems lems)
static boolean	isPlottingSavingSynVariables(org.lemsml.jlems.core.type.Component simCpt, boolean nogui)
static void	main(String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

NRNUtils

public NRNUtils()

Method Details

getSafeName

public static String getSafeName(String id)

checkCommentLineLength

protected static String checkCommentLineLength(String comment)

getStateVarName

protected static String getStateVarName(String sv)

checkForBinaryOperators

protected static String checkForBinaryOperators(String expr)

getThreshold

protected static float getThreshold(org.lemsml.jlems.core.type.Component comp,
 org.lemsml.jlems.core.type.Lems lems)
                             throws org.lemsml.jlems.core.expression.ParseError,
org.lemsml.jlems.core.sim.ContentError,
org.lemsml.jlems.core.sim.LEMSException

Throws:

org.lemsml.jlems.core.expression.ParseError

org.lemsml.jlems.core.sim.ContentError

org.lemsml.jlems.core.sim.LEMSException

checkForStateVarsAndNested

protected static String checkForStateVarsAndNested(String expr,
 org.lemsml.jlems.core.type.Component comp,
 LinkedHashMap<String,LinkedHashMap<String,String>> paramMappings)

getMechanismName

public static String getMechanismName(org.lemsml.jlems.core.type.Component comp,
 String popName)

getNeuronUnit

protected static String getNeuronUnit(String dimensionName)

convertToNeuronUnits

protected static float convertToNeuronUnits(String neuromlQuantity,
 org.lemsml.jlems.core.type.Lems lems)
                                     throws org.lemsml.jlems.core.expression.ParseError,
org.lemsml.jlems.core.sim.ContentError,
org.lemsml.jlems.core.sim.LEMSException

Throws:

org.lemsml.jlems.core.expression.ParseError

org.lemsml.jlems.core.sim.ContentError

org.lemsml.jlems.core.sim.LEMSException

convert

public float convert(float siValue,
 String dimensionName)
              throws org.lemsml.jlems.core.sim.LEMSException

Specified by:

convert in interface UnitConverter

Throws:

org.lemsml.jlems.core.sim.LEMSException

convertToNeuronUnits

protected static float convertToNeuronUnits(float siVal,
 String dimensionName)
                                     throws org.lemsml.jlems.core.sim.LEMSException

Throws:

org.lemsml.jlems.core.sim.LEMSException

getNeuronUnitFactor

public static float getNeuronUnitFactor(String dimensionName)
                                 throws org.lemsml.jlems.core.sim.LEMSException

Throws:

org.lemsml.jlems.core.sim.LEMSException

getDerivativeUnit

protected static String getDerivativeUnit(String dimensionName)

isPlottingSavingSynVariables

public static boolean isPlottingSavingSynVariables(org.lemsml.jlems.core.type.Component simCpt,
 boolean nogui)

main

public static void main(String[] args)
                 throws org.lemsml.jlems.core.sim.LEMSException

Throws:

org.lemsml.jlems.core.sim.LEMSException