Uses of Class
org.neuroml.model.BaseWithoutId

Packages that use BaseWithoutId

Package	Description
org.neuroml.model

Uses of BaseWithoutId in org.neuroml.model

Subclasses of BaseWithoutId in org.neuroml.model

Modifier and Type	Class	Description
class	AdExIaFCell	Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
class	AlphaCondSynapse	Alpha synapse: rise time and decay time are both tau_syn.
class	AlphaCurrentSynapse	Alpha current synapse: rise time and decay time are both **tau.** \n :param tau: Time course for rise and decay :type tau: time :param ibase: Baseline current increase after receiving a spike :type ibase: current
class	AlphaCurrSynapse	Alpha synapse: rise time and decay time are both tau_syn.
class	AlphaSynapse	Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** \n :param tau: Time course of rise/decay :type tau: time :param gbase: Baseline conductance, generally the maximum conductance following a single spike :type gbase: conductance :param erev: Reversal potential of the synapse :type erev: voltage
class	Annotation	A structured annotation containing metadata, specifically RDF or **property** elements
class	Base	Anything which can have a unique (within its parent) id of the form NmlId (spaceless combination of letters, numbers and underscore).
class	BaseCell	Base type of any cell ( e.
class	BaseCellMembPotCap	Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) \n :param C: Total capacitance of the cell membrane :type C: capacitance
class	BaseConductanceBasedSynapse	Synapse model which exposes a conductance **g** in addition to producing a current.
class	BaseConductanceBasedSynapseTwo	Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
class	BaseConnection	Base of all synaptic connections (chemical/electrical/analog, etc.) inside projections
class	BaseConnectionNewFormat	Base of all synaptic connections with preCell, postSegment, etc.
class	BaseConnectionOldFormat	Base of all synaptic connections with preCellId, postSegmentId, etc.
class	BaseCurrentBasedSynapse	Synapse model which produces a synaptic current.
class	BaseNonNegativeIntegerId	Anything which can have a unique (within its parent) id, which must be an integer zero or greater.
class	BaseProjection	Base for projection (set of synaptic connections) between two populations
class	BasePyNNCell	Base type of any PyNN standard cell model.
class	BasePyNNIaFCell	Base type of any PyNN standard integrate and fire model \n :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
class	BasePyNNIaFCondCell	Base type of conductance based PyNN IaF cell models \n :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_E: none :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_I: none :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
class	BasePynnSynapse	Base type for all PyNN synapses.
class	BaseSynapse	Base type for all synapses, i.
class	BaseVoltageDepSynapse	Base type for synapses with a dependence on membrane potential
class	BiophysicalProperties	The biophysical properties of the **cell** , including the **membraneProperties** and the **intracellularProperties**
class	BiophysicalProperties2CaPools	The biophysical properties of the **cell** , including the **membraneProperties2CaPools** and the **intracellularProperties2CaPools** for a cell with two Ca pools
class	BlockingPlasticSynapse	Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
class	BlockMechanism	Java class for BlockMechanism complex type.
class	Cell	Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
class	Cell2CaPools	Variant of cell with two independent Ca2+ pools.
class	CellSet	Java class for CellSet complex type.
class	ChannelDensity	Specifies a time varying ohmic conductance density, **gDensity,** which is distributed on an area of the **cell** ( specified in **membraneProperties** ) with fixed reversal potential **erev** producing a current density **iDensity** \n :param erev: The reversal potential of the current produced :type erev: voltage :param condDensity: :type condDensity: conductanceDensity
class	ChannelDensityGHK	Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity** and whose reversal potential is calculated from the Goldman Hodgkin Katz equation.
class	ChannelDensityGHK2	Time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity.** Modified version of Jaffe et al.
class	ChannelDensityNernst	Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the **cell,** producing a current density **iDensity** and whose reversal potential is calculated from the Nernst equation.
class	ChannelDensityNernstCa2	This component is similar to the original component type **channelDensityNernst** but it is changed in order to have a reversal potential that depends on a second independent Ca++ pool ( ca2 ).
class	ChannelDensityNonUniform	Specifies a time varying ohmic conductance density, which is distributed on a region of the **cell.** The conductance density of the channel is not uniform, but is set using the **variableParameter** .
class	ChannelDensityNonUniformGHK	Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose current is calculated from the Goldman-Hodgkin-Katz equation.
class	ChannelDensityNonUniformNernst	Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose reversal potential is calculated from the Nernst equation.
class	ChannelDensityVShift	Same as **channelDensity** , but with a **vShift** parameter to change voltage activation of gates.
class	ChannelPopulation	Population of a **number** of ohmic ion channels.
class	ClosedState	A **KSState** with **relativeConductance** of 0 \n :param relativeConductance: :type relativeConductance: none
class	CompoundInput	Generates a current which is the sum of all its child **basePointCurrent** element, e.
class	CompoundInputDL	Generates a current which is the sum of all its child **basePointCurrentDL** elements, e.
class	ConcentrationModelD	Java class for ConcentrationModel_D complex type.
class	ConditionalDerivedVariable	Java class for ConditionalDerivedVariable complex type.
class	Connection	Event connection directly between named components, which gets processed via a new instance of a **synapse** component which is created on the target component.
class	ConnectionWD	Event connection between named components, which gets processed via a new instance of a synapse component which is created on the target component, includes setting of **weight** and **delay** for the synaptic connection \n :param weight: :type weight: none :param delay: :type delay: time
class	Constant	LEMS ComponentType for Constant.
class	ContinuousConnection	An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
class	ContinuousConnectionInstance	An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
class	ContinuousConnectionInstanceW	An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
class	ContinuousProjection	A projection between **presynapticPopulation** and **postsynapticPopulation** through components **preComponent** at the start and **postComponent** at the end of a **continuousConnection** or **continuousConnectionInstance** .
class	DecayingPoolConcentrationModel	Model of an intracellular buffering mechanism for **ion** ( currently hard Coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** The ion is assumed to occupy a shell inside the membrane of thickness **shellThickness.** \n :param restingConc: :type restingConc: concentration :param decayConstant: :type decayConstant: time :param shellThickness: :type shellThickness: length
class	DerivedParameter	LEMS DerivedParamter element
class	DerivedVariable	LEMS ComponentType for DerivedVariable
class	DistalDetails	What to do at the distal point when creating an inhomogeneous parameter
class	DoubleSynapse	Synapse consisting of two independent synaptic mechanisms ( e.
class	EIFCondAlphaIsfaIsta	Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance \n :param v_spike: :type v_spike: none :param delta_T: :type delta_T: none :param tau_w: :type tau_w: none :param a: :type a: none :param b: :type b: none :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_E: none :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_I: none :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
class	EIFCondExpIsfaIsta	Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance \n :param v_spike: :type v_spike: none :param delta_T: :type delta_T: none :param tau_w: :type tau_w: none :param a: :type a: none :param b: :type b: none :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_E: none :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_I: none :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
class	ElectricalConnection	To enable connections between populations through gap junctions.
class	ElectricalConnectionInstance	To enable connections between populations through gap junctions.
class	ElectricalConnectionInstanceW	To enable connections between populations through gap junctions.
class	ElectricalProjection	A projection between **presynapticPopulation** to another **postsynapticPopulation** through gap junctions.
class	ExpCondSynapse	Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) \n :param e_rev: :type e_rev: none :param tau_syn: :type tau_syn: none
class	ExpCurrSynapse	Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) \n :param tau_syn: :type tau_syn: none
class	ExplicitInput	An explicit input ( anything which extends **basePointCurrent** ) to a target cell in a population
class	ExpOneSynapse	Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** \n :param tauDecay: Time course of decay :type tauDecay: time :param gbase: Baseline conductance, generally the maximum conductance following a single spike :type gbase: conductance :param erev: Reversal potential of the synapse :type erev: voltage
class	Exposure	LEMS Exposure (ComponentType property)
class	ExpThreeSynapse	Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
class	ExpTwoSynapse	Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** \n :param tauRise: :type tauRise: time :param tauDecay: :type tauDecay: time :param gbase: Baseline conductance, generally the maximum conductance following a single spike :type gbase: conductance :param erev: Reversal potential of the synapse :type erev: voltage
class	ExtracellularProperties	Java class for ExtracellularProperties complex type.
class	ExtracellularPropertiesLocal	Java class for ExtracellularPropertiesLocal complex type.
class	FitzHughNagumo1969Cell	The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons.
class	FitzHughNagumoCell	Simple dimensionless model of spiking cell from FitzHugh and Nagumo.
class	FixedFactorConcentrationModel	Model of buffering of concentration of an ion ( currently hard coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** A fixed factor **rho** is used to scale the incoming current *independently of the size of the compartment* to produce a concentration change.
class	ForwardTransition	A forward only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
class	GapJunction	Gap junction/single electrical connection \n :param conductance: :type conductance: conductance
class	GateFractional	Gate composed of subgates contributing with fractional conductance \n :param instances: :type instances: none
class	GateFractionalSubgate	Java class for GateFractionalSubgate complex type.
class	GateHHInstantaneous	Gate which follows the general Hodgkin Huxley formalism but is instantaneous, so tau = 0 and gate follows exactly inf value \n :param instances: :type instances: none
class	GateHHRates	Gate which follows the general Hodgkin Huxley formalism \n :param instances: :type instances: none
class	GateHHRatesInf	Gate which follows the general Hodgkin Huxley formalism \n :param instances: :type instances: none
class	GateHHRatesTau	Gate which follows the general Hodgkin Huxley formalism \n :param instances: :type instances: none
class	GateHHRatesTauInf	Gate which follows the general Hodgkin Huxley formalism \n :param instances: :type instances: none
class	GateHHTauInf	Gate which follows the general Hodgkin Huxley formalism \n :param instances: :type instances: none
class	GateHHUndetermined	Note all sub elements for gateHHrates, gateHHratesTau, gateFractional etc.
class	GateKS	A gate which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them \n :param instances: :type instances: none
class	GradedSynapse	Graded/analog synapse.
class	GridLayout	Java class for GridLayout complex type.
class	HHCondExp	Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
class	HHRate	Java class for HHRate complex type.
class	HHTime	Java class for HHTime complex type.
class	HHVariable	Java class for HHVariable complex type.
class	HindmarshRose1984Cell	The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
class	IafCell	Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** \n :param leakConductance: :type leakConductance: conductance :param leakReversal: :type leakReversal: voltage :param thresh: :type thresh: voltage :param reset: :type reset: voltage :param C: Total capacitance of the cell membrane :type C: capacitance
class	IafRefCell	Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** \n :param refract: :type refract: time :param leakConductance: :type leakConductance: conductance :param leakReversal: :type leakReversal: voltage :param thresh: :type thresh: voltage :param reset: :type reset: voltage :param C: Total capacitance of the cell membrane :type C: capacitance
class	IafTauCell	Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** \n :param leakReversal: :type leakReversal: voltage :param tau: :type tau: time :param thresh: The membrane potential at which to emit a spiking event and reset voltage :type thresh: voltage :param reset: The value the membrane potential is reset to on spiking :type reset: voltage
class	IafTauRefCell	Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking \n :param refract: :type refract: time :param leakReversal: :type leakReversal: voltage :param tau: :type tau: time :param thresh: The membrane potential at which to emit a spiking event and reset voltage :type thresh: voltage :param reset: The value the membrane potential is reset to on spiking :type reset: voltage
class	IFCondAlpha	Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance \n :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_E: none :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_I: none :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
class	IFCondExp	Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance \n :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_E: none :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type e_rev_I: none :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
class	IFCurrAlpha	Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current \n :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
class	IFCurrExp	Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current \n :param tau_refrac: :type tau_refrac: none :param v_thresh: :type v_thresh: none :param tau_m: :type tau_m: none :param v_rest: :type v_rest: none :param v_reset: :type v_reset: none :param cm: :type cm: none :param i_offset: :type i_offset: none :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_E: none :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell :type tau_syn_I: none :param v_init: :type v_init: none
class	Include	Include all members of another **segmentGroup** in this group
class	InhomogeneousParameter	An inhomogeneous parameter specified across the **segmentGroup** ( see **variableParameter** for usage ).
class	InhomogeneousValue	Specifies the **value** of an **inhomogeneousParameter.** For usage see **variableParameter**
class	InitMembPotential	Explicitly set initial membrane potential for the cell \n :param value: :type value: voltage
class	Input	Specifies a single input to a **target,** optionally giving the **segmentId** ( default 0 ) and **fractionAlong** the segment ( default 0.
class	InputList	An explicit list of **input** s to a **population.**
class	InputW	Specifies input lists.
class	Instance	Specifies a single instance of a component in a **population** ( placed at **location** ).
class	IntracellularProperties	Biophysical properties related to the intracellular space within the **cell** , such as the **resistivity** and the list of ionic **species** present.
class	IntracellularProperties2CaPools	Variant of intracellularProperties with 2 independent Ca pools
class	IonChannel	Note **ionChannel** and **ionChannelHH** are currently functionally identical.
class	IonChannelHH	Note **ionChannel** and **ionChannelHH** are currently functionally identical.
class	IonChannelKS	A kinetic scheme based ion channel with multiple **gateKS** s, each of which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them \n :param conductance: :type conductance: conductance
class	IonChannelScalable	Java class for IonChannelScalable complex type.
class	IonChannelVShift	Same as **ionChannel** , but with a **vShift** parameter to change voltage activation of gates.
class	Izhikevich2007Cell	Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press \n :param v0: Initial membrane potential :type v0: voltage :param k: :type k: conductance_per_voltage :param vr: Resting membrane potential :type vr: voltage :param vt: Spike threshold :type vt: voltage :param vpeak: Peak action potential value :type vpeak: voltage :param a: Time scale of recovery variable u :type a: per_time :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v :type b: conductance :param c: After-spike reset value of v :type c: voltage :param d: After-spike increase to u :type d: current :param C: Total capacitance of the cell membrane :type C: capacitance
class	IzhikevichCell	Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm \n :param v0: Initial membrane potential :type v0: voltage :param a: Time scale of the recovery variable U :type a: none :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V :type b: none :param c: After-spike reset value of V :type c: none :param d: After-spike increase to U :type d: none :param thresh: Spike threshold :type thresh: voltage
class	Layout	Java class for Layout complex type.
class	LEMSProperty	Java class for LEMS_Property complex type.
class	LinearGradedSynapse	Behaves just like a one way gap junction.
class	Location	Specifies the ( x, y, z ) location of a single **instance** of a component in a **population** \n :param x: :type x: none :param y: :type y: none :param z: :type z: none
class	Member	A single identified **segment** which is part of the **segmentGroup**
class	MembraneProperties	Properties specific to the membrane, such as the **populations** of channels, **channelDensities,** **specificCapacitance,** etc.
class	MembraneProperties2CaPools	Variant of membraneProperties with 2 independent Ca pools
class	Morphology	The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s
class	NamedDimensionalType	Java class for NamedDimensionalType complex type.
class	NamedDimensionalVariable	Java class for NamedDimensionalVariable complex type.
class	Network	Network containing: **population** s ( potentially of type **populationList** , and so specifying a list of cell **location** s ); **projection** s ( with lists of **connection** s ) and/or **explicitConnection** s; and **inputList** s ( with lists of **input** s ) and/or **explicitInput** s.
class	NeuroMLDocument	Java class for NeuroMLDocument complex type.
class	OpenState	A **KSState** with **relativeConductance** of 1 \n :param relativeConductance: :type relativeConductance: none
class	Parameter	Java class for Parameter complex type.
class	Path	Include all the **segment** s between those specified by **from** and **to** , inclusive
class	PinskyRinzelCA3Cell	Reduced CA3 cell model from Pinsky, P.
class	PlasticityMechanism	Java class for PlasticityMechanism complex type.
class	Point3DWithDiam	Base type for ComponentTypes which specify an ( **x,** **y,** **z** ) coordinate along with a **diameter.** Note: no dimension used in the attributes for these coordinates! These are assumed to have dimension micrometer ( 10^-6 m ).
class	PoissonFiringSynapse	Poisson spike generator firing at **averageRate,** which is connected to single **synapse** that is triggered every time a spike is generated, producing an input current.
class	Population	A population of components, with just one parameter for the **size,** i.
class	Projection	Projection from one population, **presynapticPopulation** to another, **postsynapticPopulation,** through **synapse.** Contains lists of **connection** or **connectionWD** elements.
class	Property	A property ( a **tag** and **value** pair ), which can be on any **baseStandalone** either as a direct child, or within an **Annotation** .
class	ProximalDetails	What to do at the proximal point when creating an inhomogeneous parameter
class	PulseGenerator	Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set \n :param delay: Delay before change in current.
class	PulseGeneratorDL	Dimensionless equivalent of **pulseGenerator** .
class	Q10ConductanceScaling	A value for the conductance scaling which varies as a standard function of the difference between the current temperature, **temperature,** and the temperature at which the conductance was originally determined, **experimentalTemp** \n :param q10Factor: :type q10Factor: none :param experimentalTemp: :type experimentalTemp: temperature
class	RampGenerator	Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set \n :param delay: Delay before change in current.
class	RampGeneratorDL	Dimensionless equivalent of **rampGenerator** .
class	RandomLayout	Java class for RandomLayout complex type.
class	ReactionScheme	Java class for ReactionScheme complex type.
class	Region	Initial attempt to specify 3D region for placing cells.
class	Requirement	Java class for Requirement complex type.
class	Resistivity	The resistivity, or specific axial resistance, of the cytoplasm \n :param value: :type value: resistivity
class	ReverseTransition	A reverse only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
class	Segment	A segment defines the smallest unit within a possibly branching structure ( **morphology** ), such as a dendrite or axon.
class	SegmentEndPoint	Java class for SegmentEndPoint complex type.
class	SegmentGroup	A method to describe a group of **segment** s in a **morphology** , e.
class	SegmentParent	Java class for SegmentParent complex type.
class	SilentSynapse	Dummy synapse which emits no current.
class	SineGenerator	Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start.
class	SineGeneratorDL	Dimensionless equivalent of **sineGenerator** .
class	Space	Java class for Space complex type.
class	SpaceStructure	Java class for SpaceStructure complex type.
class	Species	Description of a chemical species identified by **ion,** which has internal, **concentration,** and external, **extConcentration** values for its concentration \n :param initialConcentration: :type initialConcentration: concentration :param initialExtConcentration: :type initialExtConcentration: concentration
class	SpecificCapacitance	Capacitance per unit area \n :param value: :type value: specificCapacitance
class	Spike	Emits a single spike at the specified **time** \n :param time: Time at which to emit one spike event :type time: time
class	SpikeArray	Set of spike ComponentTypes, each emitting one spike at a certain time.
class	SpikeGenerator	Simple generator of spikes at a regular interval set by **period** \n :param period: Time between spikes.
class	SpikeGeneratorPoisson	Generator of spikes whose ISI is distributed according to an exponential PDF with scale: 1 / **averageRate** \n :param averageRate: The average rate at which spikes are emitted :type averageRate: per_time
class	SpikeGeneratorRandom	Generator of spikes with a random interspike interval of at least **minISI** and at most **maxISI** \n :param maxISI: Maximum interspike interval :type maxISI: time :param minISI: Minimum interspike interval :type minISI: time
class	SpikeGeneratorRefPoisson	Generator of spikes whose ISI distribution is the maximum entropy distribution over [ **minimumISI,** +infinity ) with mean: 1 / **averageRate** \n :param minimumISI: The minimum interspike interval :type minimumISI: time :param averageRate: The average rate at which spikes are emitted :type averageRate: per_time
class	SpikeSourcePoisson	Spike source, generating spikes according to a Poisson process.
class	SpikeThresh	Membrane potential at which to emit a spiking event.
class	Standalone	Elements which can stand alone and be referenced by id, e.g.
class	StateVariable	Java class for StateVariable complex type.
class	SubTree	Include all the **segment** s distal to that specified by **from** in the **segmentGroup**
class	SynapticConnection	Explicit event connection between named components, which gets processed via a new instance of a **synapse** component which is created on the target component
class	TauInfTransition	KS Transition specified in terms of time constant **tau** and steady state **inf**
class	TimedSynapticInput	Spike array connected to a single **synapse,** producing a current triggered by each **spike** in the array.
class	TransientPoissonFiringSynapse	Poisson spike generator firing at **averageRate** after a **delay** and for a **duration,** connected to single **synapse** that is triggered every time a spike is generated, providing an input current.
class	UnstructuredLayout	Java class for UnstructuredLayout complex type.
class	VoltageClamp	Voltage clamp.
class	VoltageClampTriple	Voltage clamp with 3 clamp levels.

Methods in org.neuroml.model that return BaseWithoutId

Modifier and Type	Method	Description
BaseWithoutId	ObjectFactory.createBaseWithoutId()	Create an instance of BaseWithoutId