Uses of Package
org.neuroml1.model.channel
Packages that use org.neuroml1.model.channel
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Classes in org.neuroml1.model.channel used by org.neuroml1.modelClassDescriptionRoot element containing the ions used in the mechanism, the unit system of the file (as attribute), and information on channels and/or ion concentration dynamics.
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Classes in org.neuroml1.model.channel used by org.neuroml1.model.channelClassDescriptionSpecification for the influence of a blocking species on the conductance of a BlockingSynapse.A synaptic mechanism whose conductance can be blocked by the presence of a specific species (ion/molecule).Root element containing the ions used in the mechanism, the unit system of the file (as attribute), and information on channels and/or ion concentration dynamics.Definition of a voltage/concentration dependent cell membrane conductanceClosed state of a gating complexSpecification of the factor to use in the concentration dependence of the rate expressions of a gateSpecification of the time independent scaling factor for a concentration dependent conductance.Java class for ConductanceLaw.Java class for CoreEquationType.How the current through the channel depends on the conductance of the channel.Element for parameters in a decaying pool model of ion concentration (e.g.Definition of a type of rate constant equation which takes parameters A, k, d and maps to either exponential, sigmoidal or linoidal.Java class for Deprecated_CoreEquationType.Definition of a type of rate constant equationGate with Hodgkin Huxley like state transitionsDefinition of an ion which is involved in this channel mechanism.Java class for Deprecated_IonRole.Gate with kinetic scheme transitionsSingle kinetic scheme state.Signifies an ohmic relation; the current is proportional to the potential difference across the channel.Java class for anonymous complex type.Generic parameter used in rate equationsDefinition of a rate constant equation.Choice of the various rate constant expressions allowedRate constant expressions allowed for voltage and conc dependent channels.Deprecated since v1.7.3.Definition of a mechanics of a gate which depends on voltage and concentration (e.g.Definition of a voltage gate.A basic synaptic mechanism with a double exponential conductance time course.Electrical synaptic coupling as at a gap junction.Facilitating and depressing synaptic parameters.A synaptic type with facilitating and depressing amplitude.(IN PROGRESS, not stable!!!!) In this case the parameter which determines how quickly the internal pool 'fills' is given as a fixed value.Definition of a single voltage/concentration dependent gateJava class for anonymous complex type.Preferred element for defining a gate since v1.7.3.These items ideally shouldn't be in a specification which deals with a description of the physiology of the channel.Java class for anonymous complex type.Element added for *testing purposes only*.Signifies a current which will cause the cell to behave like an integrate and fire neuron.Specification of how an ion concentration alters with time, e.g.Which ion is involved in an ion_concentration mechanism.A more complex synaptic mechanism featuring up to 4 exponential components (1 rise and 3 decay).Java class for Offset complex type.Open state of a gating complexA single parameter which can be used in generic expressionsFixed value parameters which can be used in generic expressionsInformation on the volume of the ion poolQ10 scaling affects the tau in the rate equations.Adjustments necessary to all the rate equations, e.g temperature dependencies, voltage offsets introduced when moving between species, etc.A synaptic mechanism implementing basic Spike Timing Dependent Plasticity based on Song and Abbott, 2001.A synaptic mechanism implementing basic Spike Timing Dependent Plasticity based on Song and Abbott, 2001 Extends MultiDecaySynapseSteady state value of the transition between states in a GatingComplexDefinition of a synaptic mechanismTime course of the transition between states in a GatingComplexTransition between states in a GatingComplex
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Classes in org.neuroml1.model.channel used by org.neuroml1.model.utilClassDescriptionRoot element containing the ions used in the mechanism, the unit system of the file (as attribute), and information on channels and/or ion concentration dynamics.